BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146333.19 - phase: 0 /pseudo
(786 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC84601 similar to GP|17064920|gb|AAL32614.1 Mei2-like protein {... 547 e-156
BF005768 238 2e-67
TC80055 similar to GP|19172018|gb|AAL85701.1 Mei2-like protein {... 241 1e-63
TC89732 similar to GP|17064920|gb|AAL32614.1 Mei2-like protein {... 240 1e-63
TC88714 similar to PIR|T48500|T48500 Mei2-like protein - Arabido... 235 4e-62
TC90839 weakly similar to PIR|F86416|F86416 probable RNA-binding... 223 3e-58
TC88030 similar to PIR|F86416|F86416 probable RNA-binding protei... 182 2e-56
TC80049 similar to PIR|F86416|F86416 probable RNA-binding protei... 161 1e-39
BE319024 similar to PIR|F86416|F86 probable RNA-binding protein ... 118 4e-36
TC89403 similar to GP|17065074|gb|AAL32691.1 RNA-binding protein... 111 9e-36
AJ497899 homologue to PIR|F86416|F864 probable RNA-binding prote... 55 1e-07
AW690292 weakly similar to GP|22136810|gb| unknown protein {Arab... 47 3e-05
TC89404 similar to GP|17065074|gb|AAL32691.1 RNA-binding protein... 46 5e-05
TC76886 similar to PIR|T01932|T01932 RNA binding protein homolog... 45 8e-05
TC89748 homologue to PIR|B84565|B84565 probable spliceosome asso... 41 0.002
TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein... 41 0.002
TC76334 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein... 40 0.003
AW573600 similar to PIR|T01932|T01 RNA binding protein homolog -... 40 0.003
TC86712 similar to GP|17528972|gb|AAL38696.1 putative RNA-bindin... 39 0.006
TC76331 similar to GP|7673355|gb|AAF66823.1| poly(A)-binding pro... 39 0.010
>TC84601 similar to GP|17064920|gb|AAL32614.1 Mei2-like protein {Arabidopsis
thaliana}, partial (10%)
Length = 853
Score = 547 bits (1410), Expect = e-156
Identities = 263/279 (94%), Positives = 266/279 (95%), Gaps = 4/279 (1%)
Frame = +1
Query: 462 AVFTKTLMKRLQTSISKHRKE*ITCSFVKLTPMDP----S*ILINVSANISSSFPLPVHH 517
AVFTKTLMKRLQTSISKHRKE*ITCSFVKLT P + N SANISSSFPLPVHH
Sbjct: 1 AVFTKTLMKRLQTSISKHRKE*ITCSFVKLTSNGPFIDFDKCVSNSSANISSSFPLPVHH 180
Query: 518 EQWSNSYPPPRTIWPNSPSYFDGIYAASTLQRLNQLPMSPSHMITTVLPTNNHHIQSPPF 577
EQWSNSYPPPRTIWPNSPSYFDGIYAASTLQRLNQLPMSPSHMITTVLPTNNHHIQSPPF
Sbjct: 181 EQWSNSYPPPRTIWPNSPSYFDGIYAASTLQRLNQLPMSPSHMITTVLPTNNHHIQSPPF 360
Query: 578 WDRRYTYAAEPITPHCVDFVPHNMFPHFGLNVHNQRGMVFPGRNHMINSFDTYKRVRSRR 637
WDRRYTYAAEPITPHCVDFVPHNMFPHFGLNVHNQRGMVFPGRNHMINSFDTYKRVRSRR
Sbjct: 361 WDRRYTYAAEPITPHCVDFVPHNMFPHFGLNVHNQRGMVFPGRNHMINSFDTYKRVRSRR 540
Query: 638 NVGASNLADMKRYELDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHKGAYDFVY 697
NVGASNLADMKRYELDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHH+GAYDFVY
Sbjct: 541 NVGASNLADMKRYELDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHRGAYDFVY 720
Query: 698 LPIDFRNKCNVGYAFINMTSPSLIVPFYQGFNGKKWEKF 736
LPIDFRNKCNVGYAFINMTSPSLIVPFYQGFN K+WEKF
Sbjct: 721 LPIDFRNKCNVGYAFINMTSPSLIVPFYQGFNWKQWEKF 837
>BF005768
Length = 508
Score = 238 bits (606), Expect(2) = 2e-67
Identities = 112/152 (73%), Positives = 124/152 (80%)
Frame = +2
Query: 504 SANISSSFPLPVHHEQWSNSYPPPRTIWPNSPSYFDGIYAASTLQRLNQLPMSPSHMITT 563
S+N SSSFPLP HH +WSNSYPPPR +WPNSPSY +GI AA TLQ+LNQLPMSPSHMI+T
Sbjct: 80 SSNGSSSFPLPGHHGKWSNSYPPPRRMWPNSPSYLNGICAAPTLQKLNQLPMSPSHMIST 259
Query: 564 VLPTNNHHIQSPPFWDRRYTYAAEPITPHCVDFVPHNMFPHFGLNVHNQRGMVFPGRNHM 623
LP NN+H+QS P E ITPH VDFVPHNMFPH GLN HNQRGM FPGRNHM
Sbjct: 260 ALPINNNHVQSHP---------VESITPHYVDFVPHNMFPHSGLNFHNQRGMSFPGRNHM 412
Query: 624 INSFDTYKRVRSRRNVGASNLADMKRYELDID 655
+NSFDT + +RSRRNVGA+N ADMKRYELDID
Sbjct: 413 VNSFDTNRHIRSRRNVGATNFADMKRYELDID 508
Score = 37.4 bits (85), Expect(2) = 2e-67
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +3
Query: 482 E*ITCSFVKLTPMDPS*ILINVSAN 506
E*I CSFVK TPMDPS IL+NV N
Sbjct: 3 E*IKCSFVK*TPMDPSWILMNVFQN 77
>TC80055 similar to GP|19172018|gb|AAL85701.1 Mei2-like protein {Hordeum
vulgare subsp. vulgare}, partial (16%)
Length = 1077
Score = 241 bits (614), Expect = 1e-63
Identities = 125/190 (65%), Positives = 147/190 (76%), Gaps = 6/190 (3%)
Frame = +3
Query: 603 PHFGLNVHNQRGMVFPGRNHM----INSFDTY-KRVRSRRNVGASNLADMKR-YELDIDC 656
P+FG+ G +F G + ++S + + +R RSRR N + K+ Y+LD+D
Sbjct: 291 PNFGMMSLPGHGSLFLGNSLYAGPGVSSIEGFGERGRSRRPDNIVNQVESKKLYQLDLDK 470
Query: 657 IKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHKGAYDFVYLPIDFRNKCNVGYAFINMT 716
I GED RTTLMIKNIPNKYTSKMLLAAIDE+H+G YDF+YLPIDF+NKCNVGYAFINM
Sbjct: 471 IVNGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMV 650
Query: 717 SPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRCRPILI 776
SPS IV F++ FNGKKWEKFNSEKVASLAYARIQGKAALV HFQNSSLMNEDKRCRPIL
Sbjct: 651 SPSHIVAFFKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILF 830
Query: 777 DTDGPNAGDQ 786
++G + DQ
Sbjct: 831 HSEGQDTSDQ 860
>TC89732 similar to GP|17064920|gb|AAL32614.1 Mei2-like protein {Arabidopsis
thaliana}, partial (17%)
Length = 767
Score = 240 bits (613), Expect = 1e-63
Identities = 113/142 (79%), Positives = 125/142 (87%)
Frame = +1
Query: 644 LADMKRYELDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHKGAYDFVYLPIDFR 703
+ D K++ELD+ I RGEDNRTTLMIKNIPNKYTSKMLL AIDE +G YDF+YLPIDF+
Sbjct: 58 MXDKKQFELDLGRISRGEDNRTTLMIKNIPNKYTSKMLLTAIDESCRGTYDFLYLPIDFK 237
Query: 704 NKCNVGYAFINMTSPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSS 763
NKCNVGYAFINM P I+PF+Q F+GKKWEKFNSEKVA LAYARIQGK+AL+AHFQNSS
Sbjct: 238 NKCNVGYAFINMIDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSS 417
Query: 764 LMNEDKRCRPILIDTDGPNAGD 785
LMNEDKRCRPIL TDGPNAGD
Sbjct: 418 LMNEDKRCRPILFHTDGPNAGD 483
>TC88714 similar to PIR|T48500|T48500 Mei2-like protein - Arabidopsis
thaliana, partial (17%)
Length = 1074
Score = 235 bits (600), Expect = 4e-62
Identities = 111/138 (80%), Positives = 124/138 (89%)
Frame = +2
Query: 648 KRYELDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHKGAYDFVYLPIDFRNKCN 707
K YELD+ I RGED+RTTLMIKNIPNKYTSKMLL AIDE +G YDF+YLPIDF+NKCN
Sbjct: 17 KLYELDLGRILRGEDSRTTLMIKNIPNKYTSKMLLVAIDEQCRGTYDFLYLPIDFKNKCN 196
Query: 708 VGYAFINMTSPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNE 767
VGYAFINM P+ I+PF+Q F+GKKWEKFNSEKVASLAYARIQG+A+LV+HFQNSSLMNE
Sbjct: 197 VGYAFINMIDPAQIIPFHQAFHGKKWEKFNSEKVASLAYARIQGRASLVSHFQNSSLMNE 376
Query: 768 DKRCRPILIDTDGPNAGD 785
DKRCRPIL T+GPNAGD
Sbjct: 377 DKRCRPILFQTEGPNAGD 430
>TC90839 weakly similar to PIR|F86416|F86416 probable RNA-binding protein
MEI2 36123-32976 [imported] - Arabidopsis thaliana,
partial (21%)
Length = 1178
Score = 223 bits (567), Expect = 3e-58
Identities = 124/258 (48%), Positives = 159/258 (61%), Gaps = 1/258 (0%)
Frame = +2
Query: 82 EEKLSDSLEELEAQIIGNLLPDEDDLLSGVTDGNNYIICDSNGDDIDELDLFSSNGGFDL 141
EE+ SLEE+EA IG+LLPDEDDL SGVTDG DD ++ DLFSS GG +L
Sbjct: 2 EEEPYKSLEEIEADTIGDLLPDEDDLFSGVTDGLGGSAHARASDDFEDFDLFSSGGGMEL 181
Query: 142 GDVENPSSIERNSEIISGVRNS-SIAGENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQF 200
E +S +R S + S + G++S+GE SRTLFV NI S+ +DS LKALFEQ+
Sbjct: 182 EGDELSASGKRISGLDGDPAYSGAFKGKSSFGEQSSRTLFVGNITSNAEDSELKALFEQY 361
Query: 201 GDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPKDSPSRNGVN 260
GDI T CKH+G MISYYD+RAAQNAM+AL NR +K DI Y IPK +P+ +
Sbjct: 362 GDIRTLYTACKHRGFVMISYYDLRAAQNAMKALQNRTLSSRKLDIRYSIPKGNPTEKDIG 541
Query: 261 QGTLEVFLYDSSISNTELQHILNVYGGIKEIHENPRSQRHKLIEFYDFRAADAALHGINR 320
GTL + DS++ EL+ I YG IKEI+E P K IEFYD R A+A+L +N
Sbjct: 542 HGTLMISGLDSAVLKDELKRIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNG 721
Query: 321 NDTTMKRLKVDQMQSTNS 338
K +K++ N+
Sbjct: 722 ICLAGKHIKLEPGHPRNA 775
>TC88030 similar to PIR|F86416|F86416 probable RNA-binding protein MEI2
36123-32976 [imported] - Arabidopsis thaliana, partial
(23%)
Length = 1549
Score = 182 bits (462), Expect(3) = 2e-56
Identities = 87/167 (52%), Positives = 115/167 (68%)
Frame = +3
Query: 187 DVKDSVLKALFEQFGDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIH 246
+V+DS L+ LFEQ+GDI T CKH+G MISYYDIRAA+ AMRAL N+ R+K DIH
Sbjct: 927 NVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 1106
Query: 247 YPIPKDSPSRNGVNQGTLEVFLYDSSISNTELQHILNVYGGIKEIHENPRSQRHKLIEFY 306
+ IPKD+PS +NQGTL VF D S+SN +L+ I YG +KEI E P + HK IEFY
Sbjct: 1107 FSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFY 1286
Query: 307 DFRAADAALHGINRNDTTMKRLKVDQMQSTNSESNIIQPMHPEFKQE 353
D RAADAAL +NR+D KR+K++ + + N++Q + E +Q+
Sbjct: 1287 DVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQD 1427
Score = 50.4 bits (119), Expect(3) = 2e-56
Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 22/158 (13%)
Frame = +1
Query: 37 DIVASRHESSLFSSSLSDLFSKKLRLS---ANNAFYGHSVD----TIASNYEEEKLSDSL 89
DI ++ SLFS+SL L +KL L+ ++ G VD T+ ++E++ +D
Sbjct: 424 DIFHESNDVSLFSTSLPVLPHEKLNLTDSEQDSEQSGQPVDDNLLTLGKVHKEDEGNDLF 603
Query: 90 EELEAQIIGNLLPDEDDLLSGVTDGNNYIICDSNGDDIDELDLFSSNGGFDLGDVENPSS 149
++ E L DED+LL+G+ D + + +D+DE DLF + GGF++ D E
Sbjct: 604 DDFETM----LPDDEDELLAGIMDDFDLRRLPNQLEDLDENDLFVNGGGFEM-DFEPQEG 768
Query: 150 IE---RNSEIISGVRNS------------SIAGENSYG 172
+ I G+ ++ ++AGE+ YG
Sbjct: 769 LSFGISKMSISDGIASNGIGPYAIPNGVGTVAGEHPYG 882
Score = 43.1 bits (100), Expect = 4e-04
Identities = 26/81 (32%), Positives = 39/81 (48%)
Frame = +3
Query: 178 TLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNRL 237
TL V N+D V + L+ +F +G++ T + I +YD+RAA A++ALN
Sbjct: 1155 TLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSD 1334
Query: 238 FGRKKFDIHYPIPKDSPSRNG 258
K+ K PSR G
Sbjct: 1335 IAGKRI-------KLEPSRPG 1376
Score = 26.9 bits (58), Expect(3) = 2e-56
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 173 EHPSRTLFVRNIDS 186
EHPS+TL VRNI+S
Sbjct: 884 EHPSKTLVVRNINS 925
>TC80049 similar to PIR|F86416|F86416 probable RNA-binding protein MEI2
36123-32976 [imported] - Arabidopsis thaliana, partial
(29%)
Length = 2111
Score = 161 bits (407), Expect = 1e-39
Identities = 75/92 (81%), Positives = 82/92 (88%)
Frame = +3
Query: 695 FVYLPIDFRNKCNVGYAFINMTSPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAA 754
F+YLPIDF+NKCNVGYAFINM SPSLI+PFY+ F+GKKWEKFNSEKVASLAYARIQGK A
Sbjct: 1248 FLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFHGKKWEKFNSEKVASLAYARIQGKNA 1427
Query: 755 LVAHFQNSSLMNEDKRCRPILIDTDGPNAGDQ 786
LV HFQNSSLMNEDKRCRPI+ +DG DQ
Sbjct: 1428 LVNHFQNSSLMNEDKRCRPIVFHSDGSEVADQ 1523
Score = 86.3 bits (212), Expect = 4e-17
Identities = 45/73 (61%), Positives = 54/73 (73%), Gaps = 1/73 (1%)
Frame = +1
Query: 632 RVRSRR-NVGASNLADMKRYELDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHK 690
RVRSR + S + + K ++LD+D I+ GED RTTLMIKNIPNKYTSKMLLAAIDE+HK
Sbjct: 1057 RVRSRWIDNNGSQVDNKKLFQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHK 1236
Query: 691 GAYDFVYLPIDFR 703
G YDF + R
Sbjct: 1237 GTYDFSICQLTLR 1275
Score = 30.8 bits (68), Expect(2) = 0.12
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 311 ADAALHGINRNDTTMKRLKVDQMQSTNSESNIIQPMHPEFKQE 353
A+AAL +NR+D KR+K++ + + N++ ++ E Q+
Sbjct: 49 AEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQD 177
Score = 22.7 bits (47), Expect(2) = 0.12
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 298 QRHKLIEFYDFRA 310
+ HK IE+YD RA
Sbjct: 9 RHHKFIEYYDVRA 47
>BE319024 similar to PIR|F86416|F86 probable RNA-binding protein MEI2
36123-32976 [imported] - Arabidopsis thaliana, partial
(20%)
Length = 605
Score = 118 bits (296), Expect(2) = 4e-36
Identities = 58/122 (47%), Positives = 80/122 (65%)
Frame = +1
Query: 210 CKHQGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPKDSPSRNGVNQGTLEVFLY 269
CKH+G MISY+D+RAAQ AM+AL ++ +K DIHY IPK + + GTL +
Sbjct: 169 CKHRGFVMISYFDLRAAQRAMQALQSKPLRSRKLDIHYSIPKVNAPEKDIGHGTLMLSGL 348
Query: 270 DSSISNTELQHILNVYGGIKEIHENPRSQRHKLIEFYDFRAADAALHGINRNDTTMKRLK 329
DSS+SN E + I YG IK+I+E P + K IEFYD RAA+AAL +NR + K++K
Sbjct: 349 DSSVSNDEFKRIFGFYGEIKDIYEYPEMKHLKFIEFYDVRAAEAALRALNRIEIAGKQIK 528
Query: 330 VD 331
++
Sbjct: 529 LE 534
Score = 52.0 bits (123), Expect(2) = 4e-36
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = +3
Query: 167 GENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHT 205
G+ + E PSRTLFVRNI+S V+D LK LFEQ+GDI T
Sbjct: 39 GKLPFVEQPSRTLFVRNINSSVEDFELKTLFEQYGDIRT 155
>TC89403 similar to GP|17065074|gb|AAL32691.1 RNA-binding protein MEI2
putative {Arabidopsis thaliana}, partial (13%)
Length = 952
Score = 111 bits (278), Expect(2) = 9e-36
Identities = 52/85 (61%), Positives = 67/85 (78%)
Frame = +3
Query: 158 SGVRNSSIAGENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSAM 217
+GV ++AGE+ YGEHPSRTLFVRNI+S+V+D+ L+ LFEQ+GDI T CKH+G M
Sbjct: 693 NGVGGGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHRGFVM 872
Query: 218 ISYYDIRAAQNAMRALNNRLFGRKK 242
ISYYDIRAA+ A+RAL N+ R+K
Sbjct: 873 ISYYDIRAARTALRALQNKPLRRRK 947
Score = 57.8 bits (138), Expect(2) = 9e-36
Identities = 42/113 (37%), Positives = 65/113 (57%), Gaps = 6/113 (5%)
Frame = +2
Query: 31 EDSKEDDIVASRHESSLFSSSLSDLFSKKLRLS-ANNAFYGHSVDTIASNY----EEEKL 85
E S D + ++SLFSSSL L +KL L+ N F SVD I++N+ +E +L
Sbjct: 251 EVSSGSDSYHASSDASLFSSSLPVLPHEKLNLNETENGF--QSVDDISTNFKKHHQEAEL 424
Query: 86 SDSLEELEAQIIGNLLPDED-DLLSGVTDGNNYIICDSNGDDIDELDLFSSNG 137
+ SL+ IG +LPD+D +LL+G+ D + + +D++E DLF S+G
Sbjct: 425 NGSLDNGNNHAIGTMLPDDDEELLAGIMDDFDLRGLPGSLEDLEEYDLFDSSG 583
Score = 37.4 bits (85), Expect = 0.022
Identities = 19/66 (28%), Positives = 35/66 (52%)
Frame = +3
Query: 263 TLEVFLYDSSISNTELQHILNVYGGIKEIHENPRSQRHKLIEFYDFRAADAALHGINRND 322
TL V +S++ +TEL+ + YG I+ ++ + + +I +YD RAA AL +
Sbjct: 753 TLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTALRALQNKP 932
Query: 323 TTMKRL 328
++L
Sbjct: 933 LRRRKL 950
>AJ497899 homologue to PIR|F86416|F864 probable RNA-binding protein MEI2
36123-32976 [imported] - Arabidopsis thaliana, partial
(3%)
Length = 176
Score = 54.7 bits (130), Expect = 1e-07
Identities = 25/29 (86%), Positives = 27/29 (92%)
Frame = +1
Query: 726 QGFNGKKWEKFNSEKVASLAYARIQGKAA 754
Q F+GKKWEKFNSEKVA LAYARIQGK+A
Sbjct: 88 QAFHGKKWEKFNSEKVAVLAYARIQGKSA 174
>AW690292 weakly similar to GP|22136810|gb| unknown protein {Arabidopsis
thaliana}, partial (5%)
Length = 679
Score = 47.0 bits (110), Expect = 3e-05
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Frame = +2
Query: 37 DIVASRHESSLFSSSLSDLFSKKLRLS---ANNAFYGHSVD----TIASNYEEEKLSDSL 89
DI ++ SLFS+SL L +KL L+ ++ G VD T+ ++E++ +D
Sbjct: 278 DIFHESNDVSLFSTSLPVLPHEKLNLTDSEQDSEQSGQPVDDNLLTLGKVHKEDEGNDLF 457
Query: 90 EELEAQIIGNLLPDEDDLLSGVTDGNNYIICDSNGDDIDELDLFSSNGGFDL 141
++ E L DED+LL+G+ D + + +D+DE DLF + GF++
Sbjct: 458 DDFETM----LPDDEDELLAGIMDDFDLRRLPNQLEDLDENDLFVNGXGFEM 601
>TC89404 similar to GP|17065074|gb|AAL32691.1 RNA-binding protein MEI2
putative {Arabidopsis thaliana}, partial (2%)
Length = 583
Score = 46.2 bits (108), Expect = 5e-05
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
Frame = +1
Query: 31 EDSKEDDIVASRHESSLFSSSLSDLFSKKLRLS-ANNAFYGHSVDTIASNY----EEEKL 85
E S D + +++LFSSSL L +KL L+ N F SVD I++N+ +E +L
Sbjct: 319 EVSSGSDSYHASSDANLFSSSLPVLPHEKLNLNETENGF--QSVDDISTNFKKHHQEAEL 492
Query: 86 SDSLEELEAQIIGNLLPDED-DLLSGVTD 113
+ SL+ IG +LPD+D +LL+G+ D
Sbjct: 493 NGSLDNGNNHAIGTMLPDDDEELLAGIMD 579
>TC76886 similar to PIR|T01932|T01932 RNA binding protein homolog - common
tobacco (fragment), partial (67%)
Length = 1896
Score = 45.4 bits (106), Expect = 8e-05
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Frame = +2
Query: 146 NPSSIERNSEIISGV---RNSSIA-GENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFG 201
NP + +++G N ++A G S G+ + T+FV +DSD+ D L+ F QFG
Sbjct: 1097 NPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFG 1276
Query: 202 DIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRK 241
D+ + + +G + D + A+ A++ LN + G++
Sbjct: 1277 DVISV-KIPVGKGCGFVQLADRKNAEEAIQGLNGTVIGKQ 1393
>TC89748 homologue to PIR|B84565|B84565 probable spliceosome associated
protein [imported] - Arabidopsis thaliana, partial (56%)
Length = 707
Score = 41.2 bits (95), Expect = 0.002
Identities = 27/91 (29%), Positives = 42/91 (45%), Gaps = 6/91 (6%)
Frame = +2
Query: 179 LFVRNIDSDVKDSVLKALFEQFGDIHTFDR------TCKHQGSAMISYYDIRAAQNAMRA 232
LF+ N+D DV + +L F FG I T + T +G ISY A+ +A+ A
Sbjct: 431 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTRNSRGFGFISYDSFEASDSAIEA 610
Query: 233 LNNRLFGRKKFDIHYPIPKDSPSRNGVNQGT 263
+N + ++ + Y KD+ G GT
Sbjct: 611 MNGQYLCNRQITVSYAYKKDT---KGERHGT 694
>TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45
{Nicotiana plumbaginifolia}, partial (69%)
Length = 1504
Score = 40.8 bits (94), Expect = 0.002
Identities = 24/74 (32%), Positives = 40/74 (53%), Gaps = 1/74 (1%)
Frame = +3
Query: 167 GENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGD-IHTFDRTCKHQGSAMISYYDIRA 225
G + + + T+FV N+D +V D LK +F Q+G+ +H + K G + + D +
Sbjct: 828 GAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRCG--FVQFADRSS 1001
Query: 226 AQNAMRALNNRLFG 239
A+ A+R LN L G
Sbjct: 1002AEEALRVLNGTLLG 1043
>TC76334 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45
{Nicotiana plumbaginifolia}, partial (68%)
Length = 1579
Score = 40.4 bits (93), Expect = 0.003
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Frame = +1
Query: 166 AGENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGD-IHTFDRTCKHQGSAMISYYDIR 224
+G S + + T+FV N+D +V D L+ +F Q+G+ +H + K G + + D
Sbjct: 799 SGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSGKRCG--FVQFSDRS 972
Query: 225 AAQNAMRALNNRLFGRKKFDIHY-PIPKDSPSRNGVNQG 262
A+ A+R LN L G + + + P + ++ QG
Sbjct: 973 CAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQQDPTQG 1089
>AW573600 similar to PIR|T01932|T01 RNA binding protein homolog - common
tobacco (fragment), partial (23%)
Length = 522
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/66 (31%), Positives = 37/66 (55%)
Frame = +3
Query: 176 SRTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNN 235
S T+FV +DSD+ D L+ F QFGD+ + + +G + D + A+ A++ LN
Sbjct: 102 STTIFVGGLDSDISDEDLRQPFLQFGDVISV-KIPVGKGCGFVQLADRKNAEEAIQGLNG 278
Query: 236 RLFGRK 241
+ G++
Sbjct: 279 TVIGKQ 296
>TC86712 similar to GP|17528972|gb|AAL38696.1 putative RNA-binding protein
{Arabidopsis thaliana}, partial (51%)
Length = 2144
Score = 39.3 bits (90), Expect = 0.006
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Frame = +3
Query: 144 VENPSSIERNSEIISGVRNSSIAGENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDI 203
VE ++ R+ + + NSS G + ++ +FV + S V +S K F+QFG I
Sbjct: 390 VEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFKNYFDQFGTI 569
Query: 204 HTF-----DRTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPKD---SPS 255
T + +G I+Y A + + + L G K ++ +PKD SPS
Sbjct: 570 TDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNG-KMVEVKRAVPKDLSPSPS 746
Query: 256 R---NGVNQGTL 264
R G + GT+
Sbjct: 747 RGQLGGFSYGTM 782
>TC76331 similar to GP|7673355|gb|AAF66823.1| poly(A)-binding protein
{Nicotiana tabacum}, partial (97%)
Length = 2581
Score = 38.5 bits (88), Expect = 0.010
Identities = 51/231 (22%), Positives = 89/231 (38%), Gaps = 18/231 (7%)
Frame = +3
Query: 106 DLLSGVTDGNNYIICDSNGDDIDEL---DLFSSNG-GFDLGDVENPSSIERNSEIIS--G 159
DL VTD Y + + G + DL + G+ + NP R ++++
Sbjct: 462 DLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTP 641
Query: 160 VRNSSIAGENSYGEHPSR-----TLFVRNIDSDVKDSVLKALFEQFGDIHT----FDRTC 210
+ N I S+ + R +F++N+D + L F FG+I + D +
Sbjct: 642 LNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSG 821
Query: 211 KHQGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPKDSPSRNGVNQGTLEVFLYD 270
+ +G + + AAQ A+ LN L K+ + + K G VF+ +
Sbjct: 822 QSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFVKN 1001
Query: 271 SSISNT--ELQHILNVYGGI-KEIHENPRSQRHKLIEFYDFRAADAALHGI 318
S S T EL+ +G I + + K F +F + D A +
Sbjct: 1002LSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAV 1154
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.324 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,674,239
Number of Sequences: 36976
Number of extensions: 399922
Number of successful extensions: 2690
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 1988
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 654
Number of HSP's gapped (non-prelim): 2147
length of query: 786
length of database: 9,014,727
effective HSP length: 104
effective length of query: 682
effective length of database: 5,169,223
effective search space: 3525410086
effective search space used: 3525410086
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)
Medicago: description of AC146333.19