BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146331.9 + phase: 0
(75 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC91754 similar to GP|20260310|gb|AAM13053.1 unknown protein {Ar... 112 2e-26
TC93805 weakly similar to GP|11994269|dbj|BAB01452. ABC transpor... 70 1e-13
TC80149 similar to GP|22137204|gb|AAM91447.1 At2g01320/F10A8.20 ... 61 7e-11
TC81334 weakly similar to GP|19423992|gb|AAL87274.1 putative ABC... 59 3e-10
TC79905 similar to GP|19423992|gb|AAL87274.1 putative ABC transp... 56 3e-09
AW560126 similar to GP|15292753|gb putative ABC transporter prot... 52 3e-08
TC93168 similar to PIR|T02567|T02567 probable ATP-binding casset... 45 5e-06
BF635046 similar to PIR|D84680|D84 probable ABC transporter [imp... 45 5e-06
TC86205 similar to PIR|A86289|A86289 probable ABC transporter [i... 42 3e-05
TC86206 similar to GP|20522008|dbj|BAB92011. pleiotropic drug re... 42 3e-05
TC87925 similar to GP|13605495|gb|AAK32741.1 At1g65410/T8F5_19 {... 40 1e-04
TC92726 similar to PIR|T04229|T04229 ABC-type transport protein ... 40 2e-04
TC81415 weakly similar to PIR|A84509|A84509 probable ABC transpo... 39 4e-04
TC79932 similar to GP|15912315|gb|AAL08291.1 AT5g64840/MXK3_6 {A... 37 0.002
TC89935 similar to GP|16604683|gb|AAL24134.1 putative ABC transp... 36 0.003
BI269025 weakly similar to GP|19887018|gb| Homolog of ABC-type n... 35 0.004
TC90637 similar to GP|8777328|dbj|BAA96918.1 ABC transporter-lik... 35 0.004
TC77250 homologue to GP|20466462|gb|AAM20548.1 RNase L inhibitor... 34 0.009
TC76570 similar to GP|14334904|gb|AAK59630.1 putative ABC transp... 33 0.016
TC93321 similar to GP|4586576|dbj|BAA76420.1 multidrug resistanc... 33 0.016
>TC91754 similar to GP|20260310|gb|AAM13053.1 unknown protein {Arabidopsis
thaliana}, partial (25%)
Length = 663
Score = 112 bits (281), Expect = 2e-26
Identities = 54/56 (96%), Positives = 55/56 (97%)
Frame = +2
Query: 9 LAWEDVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
LAWED+RVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAG L
Sbjct: 140 LAWEDLRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGRL 307
>TC93805 weakly similar to GP|11994269|dbj|BAB01452. ABC transporter-like
protein {Arabidopsis thaliana}, partial (15%)
Length = 649
Score = 70.5 bits (171), Expect = 1e-13
Identities = 33/56 (58%), Positives = 43/56 (75%)
Frame = +2
Query: 9 LAWEDVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
L W+D+ V + GK +K +L GL G+A+PG+++AIMGPSG GKSTLLDTLAG L
Sbjct: 206 LTWKDIWVNTISNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRL 373
>TC80149 similar to GP|22137204|gb|AAM91447.1 At2g01320/F10A8.20
{Arabidopsis thaliana}, partial (44%)
Length = 1366
Score = 61.2 bits (147), Expect = 7e-11
Identities = 29/67 (43%), Positives = 44/67 (65%)
Frame = +3
Query: 7 MVLAWEDVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSLKV 66
+ + W ++ L + + LL L+G A+PGR++AIMGPSGSGK+TLL+ LAG L
Sbjct: 336 VTIRWNNINCSLSDKSSKSVRFLLKNLSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSA 515
Query: 67 TSFLNMS 73
+ L++S
Sbjct: 516 SPRLHLS 536
>TC81334 weakly similar to GP|19423992|gb|AAL87274.1 putative ABC
transporter protein {Arabidopsis thaliana}, partial
(29%)
Length = 977
Score = 58.9 bits (141), Expect = 3e-10
Identities = 31/58 (53%), Positives = 42/58 (71%), Gaps = 2/58 (3%)
Frame = +2
Query: 9 LAWEDVRVMLP-NFGK-GPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
L W+D+ V + + GK +K +L GL G+A+P +++AIMGPSG GKSTLLD LAG L
Sbjct: 68 LTWKDLWVTVSASTGKTNESKSILQGLTGYAKPAQLLAIMGPSGCGKSTLLDALAGRL 241
>TC79905 similar to GP|19423992|gb|AAL87274.1 putative ABC transporter
protein {Arabidopsis thaliana}, partial (10%)
Length = 799
Score = 55.8 bits (133), Expect = 3e-09
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +3
Query: 9 LAWEDVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLD 58
L W+D+ VM+ G + +L L G+AEPG A+MGPSGSGKSTLLD
Sbjct: 648 LTWKDLTVMV-TLSNGEIQNVLENLTGYAEPGYXTALMGPSGSGKSTLLD 794
>AW560126 similar to GP|15292753|gb putative ABC transporter protein
{Arabidopsis thaliana}, partial (17%)
Length = 727
Score = 52.4 bits (124), Expect = 3e-08
Identities = 24/36 (66%), Positives = 30/36 (82%)
Frame = +3
Query: 29 LLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
+LN + G A PG I+AI+GPSGSGKSTLL++LAG L
Sbjct: 372 ILNNVTGIAYPGEILAILGPSGSGKSTLLNSLAGRL 479
>TC93168 similar to PIR|T02567|T02567 probable ATP-binding cassette protein
T16B24.1 - Arabidopsis thaliana, partial (13%)
Length = 647
Score = 45.1 bits (105), Expect = 5e-06
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +2
Query: 26 TKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
+K LLN ++G A G IMA +G SGSGKSTL+D LA +
Sbjct: 482 SKILLNEISGEARDGEIMAFLGASGSGKSTLIDALANRI 598
>BF635046 similar to PIR|D84680|D84 probable ABC transporter [imported] -
Arabidopsis thaliana, partial (21%)
Length = 654
Score = 45.1 bits (105), Expect = 5e-06
Identities = 24/56 (42%), Positives = 34/56 (59%)
Frame = +1
Query: 9 LAWEDVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
+AW+D+ V + K K ++ G+A PG + IMGP+ SGKSTLL +AG L
Sbjct: 484 VAWKDLTVTIKGKRKYSDK-VIKSSTGYALPGTLTVIMGPAKSGKSTLLRAIAGRL 648
>TC86205 similar to PIR|A86289|A86289 probable ABC transporter [imported] -
Arabidopsis thaliana, partial (52%)
Length = 2721
Score = 42.4 bits (98), Expect = 3e-05
Identities = 19/34 (55%), Positives = 26/34 (75%)
Frame = +1
Query: 29 LLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAG 62
LL G++G PG + A+MG SG+GK+TL+D LAG
Sbjct: 760 LLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 861
>TC86206 similar to GP|20522008|dbj|BAB92011. pleiotropic drug resistance
like protein {Nicotiana tabacum}, partial (11%)
Length = 757
Score = 42.4 bits (98), Expect = 3e-05
Identities = 19/34 (55%), Positives = 26/34 (75%)
Frame = +3
Query: 29 LLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAG 62
LL G++G PG + A+MG SG+GK+TL+D LAG
Sbjct: 333 LLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 434
>TC87925 similar to GP|13605495|gb|AAK32741.1 At1g65410/T8F5_19 {Arabidopsis
thaliana}, partial (82%)
Length = 1699
Score = 40.4 bits (93), Expect = 1e-04
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +1
Query: 13 DVRVMLPNFGKGPTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSL 64
+ R + +FG+ K++LNG++ G + I+GPSG+GKST+L +AG L
Sbjct: 469 ECRDVYKSFGE---KKILNGVSFKIRHGEAVGIIGPSGTGKSTILKIIAGLL 615
>TC92726 similar to PIR|T04229|T04229 ABC-type transport protein F14M19.30 -
Arabidopsis thaliana, partial (20%)
Length = 585
Score = 39.7 bits (91), Expect = 2e-04
Identities = 19/37 (51%), Positives = 26/37 (69%)
Frame = +1
Query: 25 PTKRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLA 61
P +L ++ A P I+AI+GPSG+GKSTLLD L+
Sbjct: 175 PPNYILKDVSLTAYPSEILAIVGPSGAGKSTLLDILS 285
>TC81415 weakly similar to PIR|A84509|A84509 probable ABC transporter
[imported] - Arabidopsis thaliana, partial (13%)
Length = 702
Score = 38.9 bits (89), Expect = 4e-04
Identities = 18/41 (43%), Positives = 27/41 (64%)
Frame = +2
Query: 29 LLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSLKVTSF 69
+L ++ A I+A++GPSG+GKSTLL +AG +K F
Sbjct: 236 ILKSVSFVARTSEIVAVVGPSGTGKSTLLRIIAGRIKDKDF 358
>TC79932 similar to GP|15912315|gb|AAL08291.1 AT5g64840/MXK3_6 {Arabidopsis
thaliana}, partial (44%)
Length = 1134
Score = 36.6 bits (83), Expect = 0.002
Identities = 20/42 (47%), Positives = 25/42 (58%)
Frame = +1
Query: 27 KRLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSLKVTS 68
K+L N N E G +AI+GP+G GKSTLL + G K S
Sbjct: 169 KKLFNKANLTIERGEKIAILGPNGCGKSTLLKLIMGLEKPIS 294
>TC89935 similar to GP|16604683|gb|AAL24134.1 putative ABC transporter
protein {Arabidopsis thaliana}, partial (34%)
Length = 1244
Score = 35.8 bits (81), Expect = 0.003
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +3
Query: 28 RLLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLA-GSLKVTSFLNM 72
+LL + G PG + A+MG SG+GK+TL+D + G KV + M
Sbjct: 954 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVFSLGRKKVVTLKEM 1091
>BI269025 weakly similar to GP|19887018|gb| Homolog of ABC-type
nitrate/sulfonate/taurine/bicarbonate transport systems
ATPase component, partial (25%)
Length = 275
Score = 35.4 bits (80), Expect = 0.004
Identities = 17/39 (43%), Positives = 25/39 (63%)
Frame = +1
Query: 29 LLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAGSLKVT 67
+++G + G ++A++GPSG GKSTLL AG K T
Sbjct: 94 VVDGFTSEFKTGELVALVGPSGCGKSTLLHLAAGLEKPT 210
>TC90637 similar to GP|8777328|dbj|BAA96918.1 ABC transporter-like protein
{Arabidopsis thaliana}, partial (41%)
Length = 916
Score = 35.4 bits (80), Expect = 0.004
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 7/47 (14%)
Frame = +1
Query: 27 KRLLNGLNGFAEPGRIMAIMGPSGSGKSTLL-------DTLAGSLKV 66
+++L+G++ G+ +AI+G SGSGKST+L D +GS+K+
Sbjct: 604 RKILDGISLLVPAGKSVAIVGTSGSGKSTILRMLFRFFDPHSGSIKI 744
>TC77250 homologue to GP|20466462|gb|AAM20548.1 RNase L inhibitor-like
protein {Arabidopsis thaliana}, partial (39%)
Length = 836
Score = 34.3 bits (77), Expect = 0.009
Identities = 14/27 (51%), Positives = 20/27 (73%)
Frame = +2
Query: 39 PGRIMAIMGPSGSGKSTLLDTLAGSLK 65
PG+++ ++G +G GKST L LAG LK
Sbjct: 386 PGQVLGLVGTNGIGKSTALKVLAGKLK 466
>TC76570 similar to GP|14334904|gb|AAK59630.1 putative ABC transporter
ATPase {Arabidopsis thaliana}, partial (69%)
Length = 1379
Score = 33.5 bits (75), Expect = 0.016
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +3
Query: 29 LLNGLNGFAEPGRIMAIMGPSGSGKSTLLDTLAG 62
+L G+N G I AIMG +GSGKST L G
Sbjct: 174 ILRGVNLTINRGEIHAIMGKNGSGKSTFAKVLVG 275
>TC93321 similar to GP|4586576|dbj|BAA76420.1 multidrug resistance protein
{Cicer arietinum}, partial (45%)
Length = 431
Score = 33.5 bits (75), Expect = 0.016
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +2
Query: 28 RLLNGLNGFAEPGRIMAIMGPSGSGKSTLL 57
++L G+ G ++ I+GPSGSGKSTLL
Sbjct: 149 QILKGITVDIPKGMVVGIIGPSGSGKSTLL 238
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.140 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,686,018
Number of Sequences: 36976
Number of extensions: 14822
Number of successful extensions: 203
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of query: 75
length of database: 9,014,727
effective HSP length: 51
effective length of query: 24
effective length of database: 7,128,951
effective search space: 171094824
effective search space used: 171094824
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)
Medicago: description of AC146331.9