BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145512.4 + phase: 0 /pseudo
(135 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC91093 weakly similar to PIR|T01873|T01873 hypothetical protein... 69 4e-13
TC86235 29 0.64
CB065293 similar to GP|21886598|em hypothetical protein {Pseudom... 27 1.9
AW697402 weakly similar to GP|18652501|gb| Putative NBS-LRR type... 27 2.5
TC78908 similar to GP|19699369|gb|AAL91294.1 AT5g06970/MOJ9_14 {... 27 3.2
TC78070 weakly similar to PIR|T07048|T07048 probable epoxide hyd... 26 5.5
TC86684 similar to PIR|T06786|T06786 6a-hydroxymaackiain methylt... 25 9.3
TC82210 weakly similar to GP|15450527|gb|AAK96556.1 AT5g21160/T1... 25 9.3
TC88465 similar to GP|6434201|emb|CAB60838.1 CycD3;3 {Lycopersic... 25 9.3
TC90922 similar to PIR|F96594|F96594 unknown protein 58496-6030... 25 9.3
>TC91093 weakly similar to PIR|T01873|T01873 hypothetical protein T24M8.10 -
Arabidopsis thaliana, partial (11%)
Length = 701
Score = 69.3 bits (168), Expect = 4e-13
Identities = 35/94 (37%), Positives = 56/94 (59%)
Frame = +3
Query: 20 SLIDFVYPDLNDNLGDQLFFQERGILAPTLDSVEHVNEFMMSLIPGEEKEYLTSNSIFRS 79
+++ YP+L ++ F Q R IL T + V+ +N++++ LIPGEE+ ++N RS
Sbjct: 402 AIVQSTYPNLVSQYNNEQFLQSRAILTSTDEVVDQINDYVLKLIPGEERVIYSAN---RS 572
Query: 80 GENSDV*SEWFTPEFLNGIKSSGIPNHRLKLKVG 113
N + PEFL +K+S +PNH+L LKVG
Sbjct: 573 EVNDVQAFDAIPPEFLQSLKTSDLPNHKLTLKVG 674
>TC86235
Length = 2393
Score = 28.9 bits (63), Expect = 0.64
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 47 PTLDSVEHVNEFMMSLIPGEEKEYLTSNSI 76
P + ++H++ MMS +PGE ++T+ SI
Sbjct: 344 PPIRKLKHISAQMMSTLPGEHHAHMTTMSI 433
>CB065293 similar to GP|21886598|em hypothetical protein {Pseudomonas
fluorescens}, partial (74%)
Length = 587
Score = 27.3 bits (59), Expect = 1.9
Identities = 17/46 (36%), Positives = 27/46 (57%), Gaps = 2/46 (4%)
Frame = -3
Query: 89 WFTPE-FLNGIKSSGIPN-HRLKLKVGCL*GWQLDPDPMGTRKKYP 132
WF P+ F G++ P HR +L++G G++ PDP G R ++P
Sbjct: 339 WFRPQRFRRGLRPRRHPGRHRSRLQLGPGPGYRRLPDPAG-RAQWP 205
>AW697402 weakly similar to GP|18652501|gb| Putative NBS-LRR type resistance
protein {Oryza sativa}, partial (3%)
Length = 375
Score = 26.9 bits (58), Expect = 2.5
Identities = 17/63 (26%), Positives = 32/63 (49%)
Frame = -2
Query: 17 LLMSLIDFVYPDLNDNLGDQLFFQERGILAPTLDSVEHVNEFMMSLIPGEEKEYLTSNSI 76
+LMS I FVY N L Q+ +++ + P+ + + F++ L+ +E N +
Sbjct: 332 VLMSFIPFVYHIFNKKLIYQIICRKKHVFEPSYPDL-YSRTFLLFLLSIKEYSSDDFNCV 156
Query: 77 FRS 79
F+S
Sbjct: 155 FKS 147
>TC78908 similar to GP|19699369|gb|AAL91294.1 AT5g06970/MOJ9_14 {Arabidopsis
thaliana}, partial (27%)
Length = 1160
Score = 26.6 bits (57), Expect = 3.2
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = +1
Query: 45 LAPTLDSVEHVNEFMMSLIPGEE 67
L P LDS EH++E ++S+ P E
Sbjct: 244 LRPFLDSAEHLSEDVISVFPAAE 312
>TC78070 weakly similar to PIR|T07048|T07048 probable epoxide hydrolase (EC
3.3.2.3) (clone EH10.1) - potato, partial (95%)
Length = 1283
Score = 25.8 bits (55), Expect = 5.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 96 NGIKSSGIPNHRLKLKVGCL*GWQL 120
NGIK S ++ +VGC *GW +
Sbjct: 311 NGIKKSDDITDDMEARVGCR*GWYI 237
>TC86684 similar to PIR|T06786|T06786 6a-hydroxymaackiain methyltransferase
(EC 2.1.1.-) - garden pea, partial (44%)
Length = 592
Score = 25.0 bits (53), Expect = 9.3
Identities = 12/37 (32%), Positives = 20/37 (53%)
Frame = -2
Query: 39 FQERGILAPTLDSVEHVNEFMMSLIPGEEKEYLTSNS 75
F+ G P + +HV+ +M I G +EY+ S+S
Sbjct: 393 FRRHG*TVPVTNGDKHVDLPLMRSIEGGVREYIVSSS 283
>TC82210 weakly similar to GP|15450527|gb|AAK96556.1 AT5g21160/T10F18_190
{Arabidopsis thaliana}, partial (24%)
Length = 1436
Score = 25.0 bits (53), Expect = 9.3
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = +1
Query: 106 HRLKLKVGCL*GWQLDP 122
HRLK+KV C W + P
Sbjct: 1291 HRLKIKVSCCRNWVVHP 1341
>TC88465 similar to GP|6434201|emb|CAB60838.1 CycD3;3 {Lycopersicon
esculentum}, partial (30%)
Length = 637
Score = 25.0 bits (53), Expect = 9.3
Identities = 13/44 (29%), Positives = 22/44 (49%)
Frame = +3
Query: 25 VYPDLNDNLGDQLFFQERGILAPTLDSVEHVNEFMMSLIPGEEK 68
V+ + +LGD+ Q GIL D V+ + ++ L G E+
Sbjct: 252 VFNSVEPSLGDEYQTQLLGILGINKDKVDECGKLLLKLWSGYEE 383
>TC90922 similar to PIR|F96594|F96594 unknown protein 58496-60308
[imported] - Arabidopsis thaliana, partial (31%)
Length = 696
Score = 25.0 bits (53), Expect = 9.3
Identities = 12/28 (42%), Positives = 20/28 (70%)
Frame = +2
Query: 17 LLMSLIDFVYPDLNDNLGDQLFFQERGI 44
+L+ L+ FVYP+L N+G+ ++F GI
Sbjct: 467 ILLLLV*FVYPEL--NIGNCVWFARDGI 544
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.325 0.144 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,945,489
Number of Sequences: 36976
Number of extensions: 46826
Number of successful extensions: 199
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of query: 135
length of database: 9,014,727
effective HSP length: 86
effective length of query: 49
effective length of database: 5,834,791
effective search space: 285904759
effective search space used: 285904759
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC145512.4