BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145449.7 + phase: 0 /pseudo
(965 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 156 3e-38
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 148 1e-35
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 120 2e-27
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 119 4e-27
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 95 1e-26
BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberos... 110 3e-24
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 80 1e-22
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 97 4e-20
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 90 4e-18
BE239977 weakly similar to GP|23237899|db polyprotein-like {Oryz... 80 3e-15
TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol po... 66 7e-11
AW685211 weakly similar to GP|4539662|gb| polyprotein {Sorghum b... 57 2e-09
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 61 2e-09
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 50 5e-06
BI272602 GP|11602812|db avenaIII {Gallus gallus}, partial (3%) 48 2e-05
BG586255 similar to GP|7682800|gb Hypothetical protein T15F17.l ... 43 7e-04
BF631997 weakly similar to GP|18542925|gb Putative pol polyprote... 33 0.001
TC85251 homologue to PIR|JQ2128|JQ2128 metallothionein - soybean... 40 0.006
AW684891 37 0.037
TC80366 similar to GP|13877617|gb|AAK43886.1 protein kinase-like... 37 0.037
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 156 bits (395), Expect = 3e-38
Identities = 94/253 (37%), Positives = 141/253 (55%), Gaps = 6/253 (2%)
Frame = +1
Query: 70 GKHVRASFPSSPNKRSKSPFDIVHSDVWGPSRVMSTLG*RYYVTFIDGFSRCTWIILLKD 129
G + SF S+ R+K D +HSD+WGPS+V S G RY +T ID F R W+ L+
Sbjct: 43 GNRKKVSF-STATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRY 219
Query: 130 RSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQ 189
+++ F F + ++ Q GK ++ L +DN E+ + FN F + GI + P PQQ
Sbjct: 220 KNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQ 399
Query: 190 NGVAERKHCHLVDTTRTLLINAHA--PFKFWGDAILTACYLINRMPSSVLDNEIPQSLLF 247
NGVAER L++ R +L NA W +A TAC+L+NR P S LD ++P+ ++
Sbjct: 400 NGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPED-IW 576
Query: 248 PKDPLYRVQLRVYGSTCF--VHDLTPGRDKLSARAVKCVFLGYSRTQKGYR--CYSPSTR 303
+ + LR++G + V+D KL+ RA +C+FL Y+ KGYR C P ++
Sbjct: 577 SGNLVDYSNLRIFGCPAYALVND-----GKLAPRAGECIFLSYASESKGYRLWCSDPKSQ 741
Query: 304 RFYISADVTFFED 316
+ +S DVTF ED
Sbjct: 742 KLILSRDVTFNED 780
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 148 bits (373), Expect = 1e-35
Identities = 81/201 (40%), Positives = 123/201 (60%), Gaps = 1/201 (0%)
Frame = -3
Query: 38 HRRLGHPSFDKLKVLVPQLSHLKSLDCESCQLGKHVRASFPSSPNKRSKSPFDIVHSDVW 97
H RLGHP L +++P + ++ +CE+C LGKH + FP + FD++++D+W
Sbjct: 578 HARLGHPHGRALNLMLPGVV-FENKNCEACILGKHCKNVFPRTSTVYENC-FDLIYTDLW 405
Query: 98 -GPSRVMSTLG*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILR 156
PS +S +Y+VTFID S+ TW+ L+ + ++ AF F + + N + I+ILR
Sbjct: 404 TAPS--LSRDNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILR 231
Query: 157 SDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFK 216
SDN EY F S + GI+HQ+SCP+TPQQNGVA+RK+ HL++ R+L+ A+
Sbjct: 230 SDNGGEYTSYAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQAN---- 63
Query: 217 FWGDAILTACYLINRMPSSVL 237
+ TACYLIN +P+ VL
Sbjct: 62 -----VSTACYLINWIPTKVL 15
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 120 bits (302), Expect = 2e-27
Identities = 61/126 (48%), Positives = 80/126 (63%)
Frame = +1
Query: 471 LSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVA 530
LS W QAM E AL N TW+LV P K +GC+ V+ VK DG V++ KARLVA
Sbjct: 82 LSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVA 261
Query: 531 IGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQ 590
G++Q G DY +TFSPV K ++RL + + + + Q+DI NAFL+G L+EE+YM Q
Sbjct: 262 KGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQ 441
Query: 591 PSGFVA 596
P GF A
Sbjct: 442 PQGFEA 459
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 119 bits (299), Expect = 4e-27
Identities = 58/144 (40%), Positives = 91/144 (62%)
Frame = -1
Query: 450 SYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR* 509
++ AF+ L+ IP++ EA+ +EWK+++ E A+ N TW GK V R
Sbjct: 600 AHCAFMVNLNENHIPRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRW 421
Query: 510 VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLF 569
+F +K DG ++R K RLVA G+T YG+DY +TF+PVAK+ ++R+ +++ L+
Sbjct: 420 IFTIKYKADGSIERKKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLW 241
Query: 570 QLDIKNAFLHGDLEEEIYMEQPSG 593
Q+D+KNAFL G+LE+E+YM P G
Sbjct: 240 QMDVKNAFLQGELEDEVYMYPPPG 169
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 94.7 bits (234), Expect(2) = 1e-26
Identities = 43/105 (40%), Positives = 68/105 (63%)
Frame = +3
Query: 458 LSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGL 517
L+ S P T EA+ ++W+ +M +EM A E N+TWEL G +G + +F K+
Sbjct: 24 LTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNE 203
Query: 518 DGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTA 562
+G++++ KARLVA GY+Q YG DY + F+PVA+ ++R+ IA+ A
Sbjct: 204 NGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAA 338
Score = 44.7 bits (104), Expect(2) = 1e-26
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 7/42 (16%)
Frame = +2
Query: 568 LFQLDIKNAFLHGDLEEEIYMEQPSGFVAWG-------GVVW 602
++QLD+K+AFL+G+L EE++++QP G+V G G VW
Sbjct: 359 VYQLDVKSAFLYGELNEEVFVDQPQGYVKKGDKLKG*KGFVW 484
>BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberosum}, partial
(10%)
Length = 804
Score = 110 bits (274), Expect = 3e-24
Identities = 83/274 (30%), Positives = 123/274 (44%), Gaps = 60/274 (21%)
Frame = +3
Query: 295 YRCYSPSTRRFYISADVTFFEDTPFF-------------------------------ASP 323
Y+CYSP T++FY S DVTFFED PF+ SP
Sbjct: 3 YKCYSPITKKFYNSMDVTFFEDQPFYTKIGIQGESFTEEYQLWDIKVLESIHGENSDVSP 182
Query: 324 TTTSSTTDVT---DSQVIPTPLFHPIFEP-------------------PVSTQSSPQLQS 361
+ V+ S++ P P +P P+S Q P +S
Sbjct: 183 QVNQTNPIVSYHLSSKIPPPVSDQPNIQPSIFPMSNQFDLSNSQSTIMPLSEQQPPSQRS 362
Query: 362 NP-------EFRRYGNIYERRHVEAPETSPIDSSDSAPKTVTTDSSDSATAPISSPVVVP 414
+FR + Y+++ + + D SDS ++ D+ I P +P
Sbjct: 363 TSTQPAEICDFRVFTTRYKKQEGKRMQQIQ-DCSDSNSNFEIENTQDN---EICEP--IP 524
Query: 415 PEPSNDLPIALHKGKRSTANPHPVYNFLSYHRLSPSYFAFVSALSSVSIPKTVHEALSHQ 474
+D I+L K KRS + HP+ F+SY +LSP + AFVS L + IP +VHE+L++
Sbjct: 525 TVEFDDRLISLRKDKRSCTS-HPICKFISYDKLSPHHLAFVSNLDKIQIPNSVHESLTNP 701
Query: 475 EWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR 508
WK+A++ E+ ALE N TWEL GK +GC+
Sbjct: 702 *WKKAILGEIHALEKNETWELSDLPSGKHPMGCK 803
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 80.1 bits (196), Expect(2) = 1e-22
Identities = 35/74 (47%), Positives = 55/74 (74%)
Frame = -2
Query: 521 VDRLKARLVAIGYTQVYGQDYNDTFSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHG 580
+ R K++LV GY Q G DY++ FSPVA+M ++R+ IA A L+Q+D+K+AF++G
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 581 DLEEEIYMEQPSGF 594
DL+EE++++QP GF
Sbjct: 244 DLKEEVFVKQPPGF 203
Score = 45.4 bits (106), Expect(2) = 1e-22
Identities = 24/66 (36%), Positives = 37/66 (55%)
Frame = -3
Query: 450 SYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR* 509
S+ AF+S++ PK V EAL +W +M +E+ E + W LV GK+++G R
Sbjct: 615 SFSAFISSIE----PKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRW 448
Query: 510 VFNVKV 515
VF K+
Sbjct: 447 VFRNKL 430
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 96.7 bits (239), Expect = 4e-20
Identities = 51/120 (42%), Positives = 71/120 (58%)
Frame = +1
Query: 181 SSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSSVLDNE 240
S HTPQQNGVAER + L++ TR +L A FW +A+ TACY+INR PS+V+D +
Sbjct: 70 SXVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLK 249
Query: 241 IPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSP 300
P + K P+ L V+G +V + R KL ++ KC+FLGY+ KGY + P
Sbjct: 250 TPMEMWKGK-PVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWDP 426
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 90.1 bits (222), Expect = 4e-18
Identities = 46/98 (46%), Positives = 64/98 (64%), Gaps = 2/98 (2%)
Frame = -2
Query: 225 ACYLINRMPSSVLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPG--RDKLSARAVK 282
ACYLINR+P+ VL ++ P +L + P +RV+G C+V L PG R+KL AR+ K
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSL-TYMRVFGCLCYV--LVPGELRNKLEARSRK 534
Query: 283 CVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDTPFF 320
+F+GYS TQKGY+CY P RR +S DV F E+ ++
Sbjct: 533 AMFIGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYY 420
>BE239977 weakly similar to GP|23237899|db polyprotein-like {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 514
Score = 80.5 bits (197), Expect = 3e-15
Identities = 39/98 (39%), Positives = 57/98 (57%)
Frame = -2
Query: 258 RVYGSTCFVHDLTPGRDKLSARAVKCVFLGYSRTQKGYRCYSPSTRRFYISADVTFFEDT 317
R++G T FVH + GR K RA+KCVF+ YS TQKGYRCY P +R++++S DVTF E
Sbjct: 456 RIFGCTSFVHIHSDGRSKFDHRALKCVFIRYSSTQKGYRCYHPPSRKYFVSRDVTFHEQE 277
Query: 318 PFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQS 355
+F ++S D ++ L F P + ++
Sbjct: 276 SYFGQN*SSSGGKYKEDESLL---LLDLTFGPEIEVET 172
>TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol polyprotein
{Oryza sativa}, partial (1%)
Length = 638
Score = 65.9 bits (159), Expect = 7e-11
Identities = 44/143 (30%), Positives = 76/143 (52%)
Frame = +2
Query: 431 STANPHPVYNFLSYHRLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESN 490
S++ + +++++ Y S + A ++A++S PK +A QEW AM E+ LE N
Sbjct: 185 SSSKSYHIFHYVGYS-FSAKHRASLAAITSNIEPKNYVQAAQ*QEWLAAMEQEIQVLEEN 361
Query: 491 HTWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAK 550
+T L GK V CR V+ + +G++++ KA+LVA + QV G+D+ D K
Sbjct: 362 NTSTLEPLREGKKWVDCRPVYKIIHKANGEIEKYKAQLVAKDFVQVEGEDF*D-LCLSNK 538
Query: 551 MTSVRLFIAMTAMKR*PLFQLDI 573
+ R + + A K * L +D+
Sbjct: 539 DDNCRCLLTIAAAKG*QLHLMDV 607
>AW685211 weakly similar to GP|4539662|gb| polyprotein {Sorghum bicolor},
partial (2%)
Length = 388
Score = 56.6 bits (135), Expect(2) = 2e-09
Identities = 35/77 (45%), Positives = 42/77 (54%)
Frame = -2
Query: 471 LSHQEWKQAMIDEMVALESNHTWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVA 530
LS Q +QAMI EM ALESN TW ++ P P + RLK R+ A
Sbjct: 243 LSRQGRQQAMIGEMTALESNRTWTII-PLPLEM---------------PYKHRLKVRMAA 112
Query: 531 IGYTQVYGQDYNDTFSP 547
GY++VYG YNDTFSP
Sbjct: 111 KGYSKVYGLHYNDTFSP 61
Score = 24.6 bits (52), Expect(2) = 2e-09
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -3
Query: 441 FLSYHRLSPSYFA--FVSALSSVSIPKTVH 468
F SY LSP F FV +SSV+IPK V+
Sbjct: 332 FFSY--LSPIAFCPTFVYTISSVAIPKIVY 249
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 60.8 bits (146), Expect = 2e-09
Identities = 31/89 (34%), Positives = 53/89 (58%)
Frame = +2
Query: 492 TWELVSPSPGKSIVGCR*VFNVKVGLDGQVDRLKARLVAIGYTQVYGQDYNDTFSPVAKM 551
T +LV G +G R ++ +K DG + + KARLVA GY + G D+++ F+PV ++
Sbjct: 56 TLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRI 235
Query: 552 TSVRLFIAMTAMKR*PLFQLDIKNAFLHG 580
++ L +A+ A + +D+K AFL+G
Sbjct: 236 ETI*LLLALAATNGC*IHHIDVKIAFLNG 322
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 49.7 bits (117), Expect = 5e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = -2
Query: 545 FSPVAKMTSVRLFIAMTAMKR*PLFQLDIKNAFLHGDLEEEIYMEQPSGF 594
F P+ K+ ++ +++ A++ L LD+K AFL GDL E+IYM QP GF
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGF 405
>BI272602 GP|11602812|db avenaIII {Gallus gallus}, partial (3%)
Length = 488
Score = 48.1 bits (113), Expect = 2e-05
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = +1
Query: 390 SAPKTVTTDSSDSATAPISSPVVVPPEPSNDLPIALHKGK------RSTANPHPVYNFLS 443
S+P + T++ + T +SP PP P P H RS N L+
Sbjct: 70 SSPASPTSNELANIT---TSPTPPPPPPPTARPHNNHTTNVGGIITRSQNNIVKTIKKLN 240
Query: 444 YHRLSPSYFAFVSALSSVSIPKTVHEALSHQEWKQAMIDEMVALESNHTWELVSPSPGKS 503
H V L + P + +AL +W+ M DE AL++N+TW+LVS S ++
Sbjct: 241 LH---------VRPLCPIE-PSNITQALRDHDWRSIMQDEFDALQNNNTWDLVSRSFAQN 390
Query: 504 IVGCR 508
+VGC+
Sbjct: 391 LVGCK 405
>BG586255 similar to GP|7682800|gb Hypothetical protein T15F17.l {Arabidopsis
thaliana}, partial (12%)
Length = 436
Score = 42.7 bits (99), Expect = 7e-04
Identities = 31/113 (27%), Positives = 51/113 (44%)
Frame = -1
Query: 176 GIIHQSSCPHTPQQNGVAERKHCHLVDTTRTLLINAHAPFKFWGDAILTACYLINRMPSS 235
G + +S H QNG+AE + TR LL+ + P WG A+L A LI PSS
Sbjct: 415 G*VWNTSVVHVHTQNGLAESFIKRIQLITRPLLMRSKQPVSAWGHAVLHAAELIRIRPSS 236
Query: 236 VLDNEIPQSLLFPKDPLYRVQLRVYGSTCFVHDLTPGRDKLSARAVKCVFLGY 288
+++ S L ++ +G +V P R K+ + +++G+
Sbjct: 235 --EHKYSPSQLLSGHVPDVSHIKTFGYPVYVPIAPPHRTKMGPQRRMGIYVGF 83
>BF631997 weakly similar to GP|18542925|gb Putative pol polyprotein {Oryza
sativa}, partial (6%)
Length = 650
Score = 33.1 bits (74), Expect(2) = 0.001
Identities = 20/56 (35%), Positives = 28/56 (49%)
Frame = -2
Query: 140 FCSEIKNQFGKGIRILRSDNAKEYFFAPFNSFMASLGIIHQSSCPHTPQQNGVAER 195
F S +K G+ + + +N E A FN I Q + +TPQ+NGVAER
Sbjct: 592 FWSRVKQ--GRR*NVFKLNNGLEICSAEFNELCKEEHITRQYTVRNTPQKNGVAER 431
Score = 27.7 bits (60), Expect(2) = 0.001
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 199 HLVDTTRTLLINAHAPFKFWGDAILTACYLINRMP 233
+ ++ R + NA F +AI T CYL+N +P
Sbjct: 422 NFLERARCMFSNAGLNRSFQAEAISTKCYLVNVLP 318
>TC85251 homologue to PIR|JQ2128|JQ2128 metallothionein - soybean, partial
(93%)
Length = 1554
Score = 39.7 bits (91), Expect = 0.006
Identities = 31/89 (34%), Positives = 39/89 (42%)
Frame = -2
Query: 322 SPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAPE 381
+P + T S IP P P E PV S S P+ RR+ + R AP
Sbjct: 518 APAKQAPTPAPATSPPIPAPT--PAIEAPVPAPES----SKPKRRRHRPKHRRHQAPAPA 357
Query: 382 TSPIDSSDSAPKTVTTDSSDSATAPISSP 410
+ I S AP T TT +DS TAP +P
Sbjct: 356 PTVIHKSPPAPPTDTT--ADSDTAPAPAP 276
Score = 31.6 bits (70), Expect = 1.5
Identities = 23/80 (28%), Positives = 34/80 (41%)
Frame = -2
Query: 345 PIFEPPVSTQSSPQLQSNPEFRRYGNIYERRHVEAPETSPIDSSDSAPKTVTTDSSDSAT 404
P+ P + +SP + S P AP+++P+ S APK
Sbjct: 797 PVTTQPPTVVASPPITSQPPV-----------TVAPKSAPVTSP--APKI---------- 687
Query: 405 APISSPVVVPPEPSNDLPIA 424
AP SSP V PP+P P++
Sbjct: 686 APASSPKVPPPQPPKSSPVS 627
>AW684891
Length = 539
Score = 37.0 bits (84), Expect = 0.037
Identities = 25/88 (28%), Positives = 40/88 (45%)
Frame = -3
Query: 107 G*RYYVTFIDGFSRCTWIILLKDRSQLFGAFLTFCSEIKNQFGKGIRILRSDNAKEYFFA 166
G ++++ FI + T + L K EI QF K I L S+ K Y
Sbjct: 348 GXKWFLAFIHNSTSIT*LFLKKH-------------EIWFQFVKSIERLCSNKGKVYVDQ 208
Query: 167 PFNSFMASLGIIHQSSCPHTPQQNGVAE 194
+ ++ G+ + C ++PQQNGV+E
Sbjct: 207 NLSQYLEENGVSQELKCVNSPQQNGVSE 124
>TC80366 similar to GP|13877617|gb|AAK43886.1 protein kinase-like protein
{Arabidopsis thaliana}, partial (16%)
Length = 814
Score = 37.0 bits (84), Expect = 0.037
Identities = 33/114 (28%), Positives = 47/114 (40%), Gaps = 6/114 (5%)
Frame = +3
Query: 317 TPFFASPTTTSSTTDVTDSQVIPTPLFHPIFEPPVSTQSSPQLQSNPEFRRYGNIYERRH 376
TP P+T ++ VT S P+ P PP +T S+P S P
Sbjct: 21 TPSSPPPSTPANPPPVTPSAPPPSTPATPSSPPPSTTPSAPP-PSTPS----------NS 167
Query: 377 VEAPETSPIDSSDS------APKTVTTDSSDSATAPISSPVVVPPEPSNDLPIA 424
+P T+P S S +P + T SSD + +P SS PP P + I+
Sbjct: 168 PPSPPTTPAISPPSGGGTTPSPPSRTPPSSDDSPSPPSSKTPPPPSPPSSSSIS 329
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.339 0.146 0.489
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,234,249
Number of Sequences: 36976
Number of extensions: 565340
Number of successful extensions: 4412
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 2488
Number of HSP's successfully gapped in prelim test: 247
Number of HSP's that attempted gapping in prelim test: 1774
Number of HSP's gapped (non-prelim): 2901
length of query: 965
length of database: 9,014,727
effective HSP length: 105
effective length of query: 860
effective length of database: 5,132,247
effective search space: 4413732420
effective search space used: 4413732420
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC145449.7