TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145331.13 + phase: 0 /partial
         (365 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF639957 similar to GP|22128709|gb putative N-acetyl-gamma-gluta...   287  4e-78
BE320377 similar to GP|16604368|gb At2g19940/F6F22.3 {Arabidopsi...   224  5e-59
TC78446 homologue to SP|Q43814|OTC_PEA Ornithine carbamoyltransf...    32  0.30
TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far...    32  0.51
TC85671 similar to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 ...    28  7.3

>BF639957 similar to GP|22128709|gb putative
           N-acetyl-gamma-glutamyl-phosphate reductase {Oryza
           sativa (japonica cultivar-group)}, partial (27%)
          Length = 683

 Score =  287 bits (735), Expect = 4e-78
 Identities = 141/141 (100%), Positives = 141/141 (100%)
 Frame = +3

Query: 1   DLIKPQNVKLSPIKCSIKSSQNNVRVGVLGASGYTGSEILRLLANHPQFGVALMTADRKA 60
           DLIKPQNVKLSPIKCSIKSSQNNVRVGVLGASGYTGSEILRLLANHPQFGVALMTADRKA
Sbjct: 237 DLIKPQNVKLSPIKCSIKSSQNNVRVGVLGASGYTGSEILRLLANHPQFGVALMTADRKA 416

Query: 61  GQAISSVFPHLGTQDLPDLIAIKDANFSDVDAVFCCLPHGTTQEIIKGLPKHLKIVDLSA 120
           GQAISSVFPHLGTQDLPDLIAIKDANFSDVDAVFCCLPHGTTQEIIKGLPKHLKIVDLSA
Sbjct: 417 GQAISSVFPHLGTQDLPDLIAIKDANFSDVDAVFCCLPHGTTQEIIKGLPKHLKIVDLSA 596

Query: 121 DFRLRDVSEYEEWYGQPHRAP 141
           DFRLRDVSEYEEWYGQPHRAP
Sbjct: 597 DFRLRDVSEYEEWYGQPHRAP 659


>BE320377 similar to GP|16604368|gb At2g19940/F6F22.3 {Arabidopsis thaliana},
           partial (27%)
          Length = 345

 Score =  224 bits (570), Expect = 5e-59
 Identities = 114/115 (99%), Positives = 115/115 (99%)
 Frame = +1

Query: 172 PTSIQLPLVPLIKANLIQTTNIIVDAKSGVSGAGRSAKENLLFTEVTEGMSSYGVTRHRH 231
           PTSIQLPLVPLIKANLIQTTNIIVDAKSGVSGAGRSAKENLLFTEVTEGMSSYGVTRHRH
Sbjct: 1   PTSIQLPLVPLIKANLIQTTNIIVDAKSGVSGAGRSAKENLLFTEVTEGMSSYGVTRHRH 180

Query: 232 APEIEQGLADAAGSKVTISFTPHLIPMSRGMQSTIYVEMAPGVRIDDLRHQLQLS 286
           APEIEQGLADAAGSKVTISFTPHLIPMSRGMQSTIYVEMAPGVRIDDLRHQL+LS
Sbjct: 181 APEIEQGLADAAGSKVTISFTPHLIPMSRGMQSTIYVEMAPGVRIDDLRHQLRLS 345


>TC78446 homologue to SP|Q43814|OTC_PEA Ornithine carbamoyltransferase
           chloroplast precursor (EC 2.1.3.3) (OTCase), partial
           (90%)
          Length = 1343

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 17/39 (43%), Positives = 24/39 (60%)
 Frame = +2

Query: 234 EIEQGLADAAGSKVTISFTPHLIPMSRGMQSTIYVEMAP 272
           +++Q L DAAGSK   +F  H +P  RG++ T  V  AP
Sbjct: 953 QVDQSLMDAAGSK---AFFMHCLPAERGVEVTEQVVEAP 1060


>TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far-red
           impaired response protein {Oryza sativa}, partial (7%)
          Length = 1244

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = +2

Query: 295 LLENGVIPRTHSVKGSNYCLFNVFPDRIPGRAIIISVIDNLVKGASG 341
           +L + ++PR HSV G    L  +  DR+P + + +++I NLVK  +G
Sbjct: 383 ILRSNILPRKHSV-GLG*MLV*L*MDRVPFQELFLNIIMNLVKPKAG 520


>TC85671 similar to SP|Q9XF97|RL4_PRUAR 60S ribosomal protein L4 (L1).
           [Apricot] {Prunus armeniaca}, complete
          Length = 1508

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/36 (38%), Positives = 22/36 (60%), Gaps = 1/36 (2%)
 Frame = +1

Query: 171 YPTSIQLP-LVPLIKANLIQTTNIIVDAKSGVSGAG 205
           YP  + LP +VP +   L+  T ++VDA S + G+G
Sbjct: 286 YPVFLVLPEVVPTVPDKLLSVTCVVVDACSLLPGSG 393


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.319    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,907,304
Number of Sequences: 36976
Number of extensions: 117581
Number of successful extensions: 511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of query: 365
length of database: 9,014,727
effective HSP length: 97
effective length of query: 268
effective length of database: 5,428,055
effective search space: 1454718740
effective search space used: 1454718740
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)