BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145330.14 - phase: 0
(1199 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 228 8e-60
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 211 1e-54
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 205 1e-52
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 191 1e-48
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 136 2e-42
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 169 5e-42
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 146 4e-35
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 121 1e-27
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 113 5e-25
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 76 8e-25
BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberos... 102 1e-21
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 95 2e-19
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 89 8e-18
BG453259 homologue to GP|21434|emb|CA ORF4 {Solanum tuberosum}, ... 88 2e-17
AW691018 weakly similar to GP|2462935|em open reading frame 1 {B... 84 2e-16
BF649643 similar to PIR|H86486|H86 protein Ty1/copia-element pol... 81 3e-15
TC81230 77 3e-14
BF645022 weakly similar to GP|8777581|dbj retroelement pol polyp... 77 5e-14
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 76 7e-14
BG452576 weakly similar to GP|12005223|gb|A reverse transcriptas... 64 2e-12
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 228 bits (582), Expect = 8e-60
Identities = 115/241 (47%), Positives = 168/241 (68%), Gaps = 2/241 (0%)
Frame = +2
Query: 828 VCKLQKSLYGLKQSPRAWFEKFTWSVKKQGYMQAQSDHTLFMRFSNDGKIAILIVYVDDI 887
VC+LQKS+YGLKQ+ R W+ K + S+ GY+Q+ SD +LF +F D L+VYVDDI
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFK-DSSFTTLLVYVDDI 196
Query: 888 ILTGDDIVEMDRLKKNLAKEFEIKDLGALKYFLGMEVARSRKGIVVSQRKYILDLLEETG 947
+L G+DI E+ +K L F+IKDLG+L+YFLG+EVARS++GI+++QRKY L+LLE++G
Sbjct: 197 VLAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSG 376
Query: 948 MSGCRPADTPMELNAKLWEKGNVPV--DIGRYQRLVGKLIYLAHTRPDIAFSVSVVSQFM 1005
+ TP +++ KL + P+ D +Y+RL+GKLIYL TRPDI+F+V +SQF+
Sbjct: 377 NLAVKSTLTPYDISLKL-HNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFV 553
Query: 1006 HSPYEEHLEAVYRILRYLKSNPGKGLYFKKTNDRDVSIFTDADWAGSVIDRKSTTGYCAY 1065
P + H +A R+L+YLK+ P KGL++ T++ +S F D+DWA RKS TGY +
Sbjct: 554 SKPQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVF 733
Query: 1066 V 1066
+
Sbjct: 734 L 736
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 211 bits (538), Expect = 1e-54
Identities = 104/201 (51%), Positives = 143/201 (70%), Gaps = 2/201 (0%)
Frame = -1
Query: 670 YSNLSSSFAAFTSQLSTVEIPKNVQEALKIPKWKEAVLEEMRALEKNKTWKIMTLPAGKN 729
+S + AF L+ IP++ +EA++ +WKE+V E A+ KN TW LP GK
Sbjct: 618 FSQYPEAHCAFMVNLNENHIPRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKK 439
Query: 730 TVGCKWVFTVKYNSDNTVERYKARLVAKGFTQAYGIDYSETFAPVAKLNTVRVLLSLAVN 789
V +W+FT+KY +D ++ER K RLVA+GFT YG DY ETFAPVAKL+T+R++LSLAVN
Sbjct: 438 AVSSRWIFTIKYKADGSIERKKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVN 259
Query: 790 LDWPLNQLDVKNAFLNGDLQEEVYMDSPPGFED--KFGLNVCKLQKSLYGLKQSPRAWFE 847
L W L Q+DVKNAFL G+L++EVYM PPG E K G NV +L+K++YGLKQSPRAW+
Sbjct: 258 LGWGLWQMDVKNAFLQGELEDEVYMYPPPGLEHLVKRG-NVLRLKKAIYGLKQSPRAWYN 82
Query: 848 KFTWSVKKQGYMQAQSDHTLF 868
K + ++ +G+ +++ DHTLF
Sbjct: 81 KLSTTLNGRGFRKSELDHTLF 19
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 205 bits (521), Expect = 1e-52
Identities = 97/195 (49%), Positives = 136/195 (69%)
Frame = +1
Query: 697 LKIPKWKEAVLEEMRALEKNKTWKIMTLPAGKNTVGCKWVFTVKYNSDNTVERYKARLVA 756
L P+W +A+ E +AL NKTW ++ LP K +GCKWV+ VK N D +V ++KARLVA
Sbjct: 82 LSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVA 261
Query: 757 KGFTQAYGIDYSETFAPVAKLNTVRVLLSLAVNLDWPLNQLDVKNAFLNGDLQEEVYMDS 816
KGF+Q G DY+ETF+PV K T+R++L++A+ W + Q+D+ NAFLNG LQEEVYM
Sbjct: 262 KGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQ 441
Query: 817 PPGFEDKFGLNVCKLQKSLYGLKQSPRAWFEKFTWSVKKQGYMQAQSDHTLFMRFSNDGK 876
P GFE VCKL KSLYGLKQ+PRAW+E T + + G+ +++ D +L + ++ +G
Sbjct: 442 PQGFEAANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLI-YNQNGA 618
Query: 877 IAILIVYVDDIILTG 891
L +YVDDI++TG
Sbjct: 619 CIYLXIYVDDILITG 663
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 191 bits (485), Expect = 1e-48
Identities = 94/253 (37%), Positives = 158/253 (62%), Gaps = 3/253 (1%)
Frame = +3
Query: 684 LSTVEIPKNVQEALKIPKWKEAVLEEMRALEKNKTWKIMTLPAGKNTVGCKWVFTVKYNS 743
L+ P +EA+K KW+ ++ EM A E+N TW++ L +G T+G KW+F K N
Sbjct: 24 LTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNE 203
Query: 744 DNTVERYKARLVAKGFTQAYGIDYSETFAPVAKLNTVRVLLSLAVNLDWP---LNQLDVK 800
+ +E+YKARLVAKG++Q YG+DY+E FAPVA+ +T+R++++LA + ++ +
Sbjct: 204 NGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M*KA 383
Query: 801 NAFLNGDLQEEVYMDSPPGFEDKFGLNVCKLQKSLYGLKQSPRAWFEKFTWSVKKQGYMQ 860
++ + +++ + ++ V +++LYGLKQ+PRAW+ + K+G+ +
Sbjct: 384 HSCMEN*MRKFLLINHRVM*RRVIS*RV---KRALYGLKQAPRAWYSRIEAYFTKEGFEK 554
Query: 861 AQSDHTLFMRFSNDGKIAILIVYVDDIILTGDDIVEMDRLKKNLAKEFEIKDLGALKYFL 920
+HTLF++ S GKI I+ +YVDD+I G+D + KK++ KEF + DLG + YFL
Sbjct: 555 CPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKMHYFL 734
Query: 921 GMEVARSRKGIVV 933
G+EV ++ KGI +
Sbjct: 735 GVEVTQNEKGIYI 773
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 136 bits (342), Expect(2) = 2e-42
Identities = 65/142 (45%), Positives = 103/142 (71%), Gaps = 1/142 (0%)
Frame = -2
Query: 747 VERYKARLVAKGFTQAYGIDYSETFAPVAKLNTVRVLLSLAVNLDWPLNQLDVKNAFLNG 806
+ R K++LV +G+ Q GIDY E F+PVA++ +R+L++ A + + L Q+DVK+AF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 807 DLQEEVYMDSPPGFED-KFGLNVCKLQKSLYGLKQSPRAWFEKFTWSVKKQGYMQAQSDH 865
DL+EEV++ PPGFED + +V +L K+LYGLKQ+PRAW+E+ + + K G+ + + D+
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 866 TLFMRFSNDGKIAILIVYVDDI 887
TLF+ + ++ I+ VYVDDI
Sbjct: 64 TLFL-LKRE*ELLIIQVYVDDI 2
Score = 56.2 bits (134), Expect(2) = 2e-42
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = -3
Query: 676 SFAAFTSQLSTVEIPKNVQEALKIPKWKEAVLEEMRALEKNKTWKIMTLPAGKNTVGCKW 735
SF+AF S + PKNV+EAL+ W ++ EE+ E++K W ++ P GK +G +W
Sbjct: 615 SFSAFISSIE----PKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRW 448
Query: 736 VFTVK 740
VF K
Sbjct: 447 VFRNK 433
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 169 bits (429), Expect = 5e-42
Identities = 86/217 (39%), Positives = 136/217 (62%), Gaps = 1/217 (0%)
Frame = +1
Query: 922 MEVARSRKGIVVSQRKYILDLLEETGMSGCRPADTPMELNAKLWEKGN-VPVDIGRYQRL 980
+EV ++ +GI + QRKY+ DLLE GM + P+ KL + N V VD +Y+++
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 981 VGKLIYLAHTRPDIAFSVSVVSQFMHSPYEEHLEAVYRILRYLKSNPGKGLYFKKTNDRD 1040
VG L+YLA TRPD+ + +S++S+FM+ P E H+ AV R+LRYL G+ +K+
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1041 VSIFTDADWAGSVIDRKSTTGYCAYVWGNLVTWRSKKQGVVARSSAEAEFRAMAQGICEL 1100
+ +TD+D+AG + DRKST+GY + V+W SKKQ VV S+ +AEF A A C+
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1101 LWIQKLLEELKLKIDLPLKLFCDSKAAISIAHNPVQH 1137
+W++++LE+L + ++CD+ + I ++ NPV H
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 146 bits (369), Expect = 4e-35
Identities = 76/124 (61%), Positives = 92/124 (73%)
Frame = +1
Query: 840 QSPRAWFEKFTWSVKKQGYMQAQSDHTLFMRFSNDGKIAILIVYVDDIILTGDDIVEMDR 899
QSPR WF++FT VKK GY+Q Q+DH +F++ S+ K AILIVYVDDI LTGD + R
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 900 LKKNLAKEFEIKDLGALKYFLGMEVARSRKGIVVSQRKYILDLLEETGMSGCRPADTPME 959
LK LA+EFEIKDLG LKYFLGMEVAR +KG +SQRKY+LDLL+ET M GC+ P
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDPYG 360
Query: 960 LNAK 963
N +
Sbjct: 361 CNCE 372
Score = 67.0 bits (162), Expect = 4e-11
Identities = 34/55 (61%), Positives = 41/55 (73%), Gaps = 1/55 (1%)
Frame = +2
Query: 952 RPADTPMELNAKLWEKGN-VPVDIGRYQRLVGKLIYLAHTRPDIAFSVSVVSQFM 1005
+P++TPM+ KL N VD GRYQRLVGKLIYL+HTRPDI+F V +SQFM
Sbjct: 338 KPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 121 bits (304), Expect = 1e-27
Identities = 60/146 (41%), Positives = 93/146 (63%)
Frame = +2
Query: 1047 ADWAGSVIDRKSTTGYCAYVWGNLVTWRSKKQGVVARSSAEAEFRAMAQGICELLWIQKL 1106
+DWAG RKST+GY ++ ++W SKKQ VVA S+AEAE+ A + +W++++
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1107 LEELKLKIDLPLKLFCDSKAAISIAHNPVQHDRTKHIEIDRHFIKEKIVSGTICLPYVTS 1166
LE + + + P K++CD+K+AI+++ NPV H R+KHI+I H I+E I + + Y +
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1167 NEQTADILTKSLARPNFERLIVKLGM 1192
E+ ADI TK L +F +L LGM
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGM 439
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 113 bits (282), Expect = 5e-25
Identities = 56/165 (33%), Positives = 104/165 (62%), Gaps = 2/165 (1%)
Frame = +1
Query: 1014 EAVYRILRYLKSNPGKGLYFKKTNDRDVSI--FTDADWAGSVIDRKSTTGYCAYVWGNLV 1071
+A+ +L+YL + L + K + ++ + DAD+AG+V RKS +G+ ++G +
Sbjct: 1 QALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTI 180
Query: 1072 TWRSKKQGVVARSSAEAEFRAMAQGICELLWIQKLLEELKLKIDLPLKLFCDSKAAISIA 1131
+W++ +Q VV S+ +AE+ A +G+ + +W++ ++ EL + + +K+ CDS++AI +A
Sbjct: 181 SWKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEY-VKIHCDSQSAIHLA 357
Query: 1132 HNPVQHDRTKHIEIDRHFIKEKIVSGTICLPYVTSNEQTADILTK 1176
++ V H+RTKHI+I HFI++ I S I + + S E AD+ TK
Sbjct: 358 NHQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 75.9 bits (185), Expect(2) = 8e-25
Identities = 35/92 (38%), Positives = 59/92 (64%)
Frame = +3
Query: 1092 AMAQGICELLWIQKLLEELKLKIDLPLKLFCDSKAAISIAHNPVQHDRTKHIEIDRHFIK 1151
++ Q E +W+Q+L+EEL K + + ++CDS++A+ IA NP H RTKHI I HF++
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQE-QITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVR 404
Query: 1152 EKIVSGTICLPYVTSNEQTADILTKSLARPNF 1183
E + G++ + + +N+ AD +TKS+ F
Sbjct: 405 EVVEEGSVDMQKIHTNDNLADAMTKSINTDKF 500
Score = 57.4 bits (137), Expect(2) = 8e-25
Identities = 34/77 (44%), Positives = 46/77 (59%)
Frame = +1
Query: 1016 VYRILRYLKSNPGKGLYFKKTNDRDVSIFTDADWAGSVIDRKSTTGYCAYVWGNLVTWRS 1075
V RI+RY+K G + F + + V + D+D+AG RKSTTGY + G V+W S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGGS-ELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1076 KKQGVVARSSAEAEFRA 1092
K Q VVA S+ EAE+ A
Sbjct: 178 KLQTVVALSTTEAEYMA 228
>BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberosum}, partial
(10%)
Length = 804
Score = 102 bits (253), Expect = 1e-21
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 10/250 (4%)
Frame = +3
Query: 495 GPDFKDQPQ----QIMLSQNSETNIGAPKENAQESIM------ELNPLVNEVPTNSGATF 544
G F ++ Q +++ S + E + +P+ N I+ ++ P V++ P + F
Sbjct: 99 GESFTEEYQLWDIKVLESIHGENSDVSPQVNQTNPIVSYHLSSKIPPPVSDQPNIQPSIF 278
Query: 545 SNQNHNEQILDIDSNEEEPEMPQQNDSNKETKNRFNSSDPIWKGNVYERRDHKRGDEGPI 604
N + SN + MP ++ I V+ R K+ EG
Sbjct: 279 PMSNQFDL-----SNSQSTIMPLSEQQPPSQRSTSTQPAEICDFRVFTTRYKKQ--EGKR 437
Query: 605 LQPCQESEPRNDPNHHPNPGKSSIPKCRGKSSSITTSDDPDLHIPIAIRKPVRSCTKHPM 664
+Q Q+ N N + I I T + D I ++RK RSCT HP+
Sbjct: 438 MQQIQDCSDSNSNFEIENTQDNEI------CEPIPTVEFDDRLI--SLRKDKRSCTSHPI 593
Query: 665 AKFVSYSNLSSSFAAFTSQLSTVEIPKNVQEALKIPKWKEAVLEEMRALEKNKTWKIMTL 724
KF+SY LS AF S L ++IP +V E+L P WK+A+L E+ ALEKN+TW++ L
Sbjct: 594 CKFISYDKLSPHHLAFVSNLDKIQIPNSVHESLTNP*WKKAILGEIHALEKNETWELSDL 773
Query: 725 PAGKNTVGCK 734
P+GK+ +GCK
Sbjct: 774 PSGKHPMGCK 803
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 94.7 bits (234), Expect = 2e-19
Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
Frame = +1
Query: 991 RPDIAFSVSVVSQFMHSPYEEHLEAVYRILRYLKSNPGKGLYF---KKTNDRDVSIFTDA 1047
RPDI +SVSV+S+FMH P + HL A RILRY++ GL F K+ ++ ++D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1048 DWAGSVIDRKSTTGYCAYVWGNLVTWRSKKQGVVARSSAEAEFRAMAQGICELLWIQKLL 1107
DW G DR+ST+GY ++W +KKQ + A SS EAE+ A + LW+ ++
Sbjct: 301 DWCG---DRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1108 EELKLKI 1114
+ELK ++
Sbjct: 472 KELKCEV 492
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 89.4 bits (220), Expect = 8e-18
Identities = 41/96 (42%), Positives = 63/96 (64%)
Frame = +2
Query: 711 RALEKNKTWKIMTLPAGKNTVGCKWVFTVKYNSDNTVERYKARLVAKGFTQAYGIDYSET 770
R + +T K++ P G +G +W++ +K N D T+ +YKARLVAKG+ + GID+ E
Sbjct: 35 RIYYQKQTLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEV 214
Query: 771 FAPVAKLNTVRVLLSLAVNLDWPLNQLDVKNAFLNG 806
FAPV ++ T+ +LL+LA ++ +DVK AFLNG
Sbjct: 215 FAPVVRIETI*LLLALAATNGC*IHHIDVKIAFLNG 322
>BG453259 homologue to GP|21434|emb|CA ORF4 {Solanum tuberosum}, partial (5%)
Length = 657
Score = 88.2 bits (217), Expect = 2e-17
Identities = 57/148 (38%), Positives = 84/148 (56%), Gaps = 7/148 (4%)
Frame = -2
Query: 1019 ILRYLKSNPGKGLYFKKTNDRDVSIFTDADWAGSVIDRKSTTGYCAYVWGNLVTWRSKKQ 1078
++ L S+ + + FK+ + ++ + AG ++DR ST+GY ++ GN+V KQ
Sbjct: 566 LIEGLXSSGTQMIVFKRE*KLSMEVYXNTVCAGWIVDRGSTSGY*MFLGGNMV---E*KQ 396
Query: 1079 GVVARSSAEAEFRAMAQGICELLWIQKLLEELKLKIDL-------PLKLFCDSKAAISIA 1131
VVAR F +QG+ ++ EELK+K+D P+ LF ++ IA
Sbjct: 395 NVVAR*VQRHNFELCSQGL*RVMD-----EELKIKLDDLIINYKDPMTLF*NNNFVSRIA 231
Query: 1132 HNPVQHDRTKHIEIDRHFIKEKIVSGTI 1159
HNPVQH RTKHIEID+HFI EK+ SG I
Sbjct: 230 HNPVQHYRTKHIEIDQHFIIEKLYSGLI 147
>AW691018 weakly similar to GP|2462935|em open reading frame 1 {Brassica
oleracea}, partial (12%)
Length = 639
Score = 84.3 bits (207), Expect = 2e-16
Identities = 41/121 (33%), Positives = 67/121 (54%)
Frame = +2
Query: 99 QRLDGKNYMEWSQTVRLILDGKGKLGFITGEIQMPSTTDPNYRFWKSENSTIIAWLLSTM 158
Q L+G NY EWS+++ L L K KLG I G ++ PS DP WK N ++ W+L ++
Sbjct: 203 QPLNGGNYGEWSRSMLLSLSAKNKLGLIDGTVKAPSADDPKLPLWKRCNDLVLTWILHSI 382
Query: 159 ESTIKKPYMFLPTAKNVWDAVKATYSDIQNSSRIFDLKSRLWQAKQSDRDVTTYYNELMA 218
E I + +F TA VW + +S + SRI+ ++ + + +Q ++ YY +L +
Sbjct: 383 EPDIARSVIFSDTAAAVWSDLHDRFSQ-GDESRIYQIRQEISECRQGSLLISDYYTKLKS 559
Query: 219 L 219
L
Sbjct: 560 L 562
>BF649643 similar to PIR|H86486|H86 protein Ty1/copia-element polyprotein
[imported] - Arabidopsis thaliana, partial (2%)
Length = 608
Score = 80.9 bits (198), Expect = 3e-15
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Frame = +1
Query: 100 RLDGKNYMEWSQTVRLILDGKGKLGFITGEIQMPSTTD--PNYRFWKSENSTIIAWLLST 157
+L+G NY WS+++ L K K+GFI G I+ PS D Y W NS I++WL +
Sbjct: 172 KLNGTNYSSWSRSMVHALTAKNKVGFINGSIKTPSEVDQPAEYALWNRCNSMILSWLTHS 351
Query: 158 MESTIKKPYMFLPTAKNVWDAVKATYSDIQNSSRIFDLKSRLWQAKQSDRDVTTYYNELM 217
+E + K + TA VW+ K +S +N I+ ++ L Q +TY+ ++
Sbjct: 352 VEPDLAKGVIHAKTACQVWEDFKDQFSQ-KNIPAIYQIQKSLASLSQGTVSASTYFTKIK 528
Query: 218 ALWQELD 224
LW EL+
Sbjct: 529 GLWDELE 549
>TC81230
Length = 958
Score = 77.4 bits (189), Expect = 3e-14
Identities = 63/246 (25%), Positives = 109/246 (43%), Gaps = 10/246 (4%)
Frame = +1
Query: 101 LDGKNYMEWSQTVRLILDGKGKLGFITGEIQMPS-----TTDP---NYRFWKSENSTIIA 152
L+G NY W++++ L G+ ++TG+ + P+ T D W S+N II
Sbjct: 238 LNGSNYNHWAESMCGFLKGRRLWRYVTGDKKCPTKGKDDTADAFADKLEEWDSKNHQIIT 417
Query: 153 WLLSTMESTIKKPYMFLPTAKNVWDAVKATY--SDIQNSSRIFDLKSRLWQAKQSDRDVT 210
W +T +I + AK VWD +K Y SD+ + ++ S L Q QS + V
Sbjct: 418 WFRNTSIPSIHMQFGRFENAKEVWDHLKQRYTISDLSHQYQLLKDLSNLKQ--QSGQPVY 591
Query: 211 TYYNELMALWQELDLCYDDNWRCTEDSVLFLKRQENDRVFVLLAGLNNCLDEVRGRILGR 270
+ ++ +W +L C + + + D + + R+ L L + + VR L +
Sbjct: 592 EFLAQMEVIWNQLTSC-EPSLKDATDMKTYETHRNRVRLIQFLMALTDEYEPVRASSLHQ 768
Query: 271 IPLPTLQETFSEVRREEARQSVMMGKSASITESSALVTKGNEEGKRDGKKPFCDHCNRQW 330
PLPTL+ ++ EE R ++ K+ + + VT + KP C HC +
Sbjct: 769 NPLPTLENALPCLKSEETRLQLVPPKA----DLAFAVT-------NNATKP-CRHCQKSG 912
Query: 331 HTRDTC 336
H+ C
Sbjct: 913 HSFSDC 930
>BF645022 weakly similar to GP|8777581|dbj retroelement pol polyprotein-like
{Arabidopsis thaliana}, partial (8%)
Length = 685
Score = 76.6 bits (187), Expect = 5e-14
Identities = 42/120 (35%), Positives = 67/120 (55%)
Frame = -2
Query: 85 GNNDGYSNILKFEVQRLDGKNYMEWSQTVRLILDGKGKLGFITGEIQMPSTTDPNYRFWK 144
G+ND N++ +L G NY EWS+ +R K K GF+ G+I P TT WK
Sbjct: 366 GSNDNPGNVIT--PIQLRGLNYDEWSRAIRTSFQAKRKYGFVEGKIPKP-TTPEKLEDWK 196
Query: 145 SENSTIIAWLLSTMESTIKKPYMFLPTAKNVWDAVKATYSDIQNSSRIFDLKSRLWQAKQ 204
+ S +IAWLL+T+E +++ + A+++W +K + + N +RI LK+ L + KQ
Sbjct: 195 AVQSMLIAWLLNTIEPSLRSTLSYYDDAESLWTHLKQRFC-VVNGARICQLKASLGECKQ 19
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 76.3 bits (186), Expect = 7e-14
Identities = 39/73 (53%), Positives = 48/73 (65%)
Frame = -2
Query: 771 FAPVAKLNTVRVLLSLAVNLDWPLNQLDVKNAFLNGDLQEEVYMDSPPGFEDKFGLNVCK 830
F P+ KLNT+ LLS+ + L LDVK AFL GDL E++YM P GF + G V K
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS*EVGKMVGK 375
Query: 831 LQKSLYGLKQSPR 843
L+KS+YGLKQ PR
Sbjct: 374 LKKSMYGLKQGPR 336
Score = 40.0 bits (92), Expect = 0.005
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = -3
Query: 887 IILTGDDIVEMDRLKKNLAKEFEIKDLGALKYFLGMEV-ARSRKGIV-VSQRKYILDLLE 944
+++ G +I E+ LK +KE ++KDLG K +GM++ +KG++ +SQ +YI +L+
Sbjct: 271 LLVVGSNIDEIKNLKTRFSKEIDMKDLGPAKKIIGMQIMIDKQKGVL*LSQVEYITRVLQ 92
>BG452576 weakly similar to GP|12005223|gb|A reverse transcriptase-like
protein {Spiranthes hongkongensis}, partial (25%)
Length = 676
Score = 63.9 bits (154), Expect(2) = 2e-12
Identities = 37/91 (40%), Positives = 55/91 (59%)
Frame = +2
Query: 857 GYMQAQSDHTLFMRFSNDGKIAILIVYVDDIILTGDDIVEMDRLKKNLAKEFEIKDLGAL 916
GY Q+ +DH++F S + I +VY+DDI+ DD E +K +L K F I LG L
Sbjct: 278 GYKQSPNDHSIF---SFGRRFTIFLVYLDDIVFARDDHSETQLVKSHLDKNFIIIGLGTL 448
Query: 917 KYFLGMEVARSRKGIVVSQRKYILDLLEETG 947
Y +G+++A S I+ Q KY ++LLEE+G
Sbjct: 449 HY-VGVKIA*SES*IIDDQCKYTIELLEESG 538
Score = 27.3 bits (59), Expect(2) = 2e-12
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 828 VCKLQKSLYGLKQSPRAWFEKF 849
VCK S+YGLK + R + KF
Sbjct: 165 VCKFHNSIYGLKHAHRQ*YSKF 230
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.315 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,381,624
Number of Sequences: 36976
Number of extensions: 581028
Number of successful extensions: 10001
Number of sequences better than 10.0: 341
Number of HSP's better than 10.0 without gapping: 4334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6835
length of query: 1199
length of database: 9,014,727
effective HSP length: 107
effective length of query: 1092
effective length of database: 5,058,295
effective search space: 5523658140
effective search space used: 5523658140
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Medicago: description of AC145330.14