TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145329.2 + phase: 0 /pseudo
         (246 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF635063 weakly similar to PIR|F84486|F84 probable retroelement ...   327  2e-90
BG646342 weakly similar to PIR|F84486|F84 probable retroelement ...   134  4e-32
BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x pa...    60  8e-10
BG587684 similar to GP|12858190|dbj evidence:NAS~putative~unclas...    29  1.5
TC91834 similar to PIR|T08416|T08416 disease resistance protein ...    28  3.2
BI310662 homologue to SP|P12227|RPO DNA-directed RNA polymerase ...    28  3.2
TC81200 weakly similar to GP|13786069|gb|AAK39554.1 putative cal...    28  4.2
BE999520 homologue to SP|O65781|GAE2 UDP-glucose 4-epimerase GEP...    27  7.2
BG454361                                                               27  7.2
AW584129 weakly similar to GP|13235641|em S-adenosyl-L-methionin...    27  7.2
TC79835 homologue to SP|P51082|CHSB_PEA Chalcone synthase 1B (EC...    27  9.4

>BF635063 weakly similar to PIR|F84486|F84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (4%)
          Length = 677

 Score =  327 bits (839), Expect = 2e-90
 Identities = 170/190 (89%), Positives = 177/190 (92%)
 Frame = -2

Query: 1   TMGSKWDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEGLLPVTMSQVEKTDMVDKVR 60
           TMGSK DIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGE  LPVTMS+ EKT+MVDK R
Sbjct: 571 TMGSKRDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEVSLPVTMSRAEKTEMVDKAR 392

Query: 61  SAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QLYLFRMVESKAIIE 120
           SAIVLCLGDKVLREVAKE TAAS+WAKL SLYMTKSLAHRQFLK QLY FRMVESKAI+E
Sbjct: 391 SAIVLCLGDKVLREVAKERTAASMWAKL*SLYMTKSLAHRQFLKQQLYSFRMVESKAIME 212

Query: 121 QLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKEGTVILEEVQAAL 180
           QL EFNKILDDLENIEVQLEDE+KAILL CA+PKSFESFKDTMLYGKEGTV LEEVQAAL
Sbjct: 211 QLTEFNKILDDLENIEVQLEDEEKAILLLCALPKSFESFKDTMLYGKEGTVTLEEVQAAL 32

Query: 181 RTKKLTKSKD 190
           RTK+LTKS D
Sbjct: 31  RTKELTKSND 2


>BG646342 weakly similar to PIR|F84486|F84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (4%)
          Length = 599

 Score =  134 bits (336), Expect = 4e-32
 Identities = 71/93 (76%), Positives = 80/93 (85%)
 Frame = +2

Query: 60  RSAIVLCLGDKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QLYLFRMVESKAII 119
           RSAIVLCLGDKVLREVAKEPTA S+ AKLE LYMTKSLAHRQFLK QLY F+MVESKAI 
Sbjct: 5   RSAIVLCLGDKVLREVAKEPTATSMCAKLEYLYMTKSLAHRQFLKQQLYSFKMVESKAIT 184

Query: 120 EQLMEFNKILDDLENIEVQLEDEDKAILLFCAI 152
           E L+EFNKI+ DLENIEV LED   A++++C +
Sbjct: 185 ELLVEFNKIIGDLENIEVHLEDAG-ALMVWCCL 280


>BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x paradisi},
           partial (3%)
          Length = 658

 Score = 60.1 bits (144), Expect = 8e-10
 Identities = 37/138 (26%), Positives = 73/138 (52%), Gaps = 8/138 (5%)
 Frame = +2

Query: 65  LCLG-------DKVLREVAKEPTAASIWAKLESLYMTKSLAHRQFLK*QLYLFRMVESKA 117
           +CLG       D +       P+A  +W KLE+ YM +    ++FL      ++MV++K+
Sbjct: 197 ICLGHILNGMSDSLFDIYQSSPSAKDLWDKLETRYMREDATSKKFLVSHFNNYKMVDNKS 376

Query: 118 IIEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKEGTVILEEVQ 177
           ++EQL E  +IL++ +   + +++      +   +P S++ FK TM + KE  + LE++ 
Sbjct: 377 VMEQLYEIERILNNYKQHNMNMDETIIVSSIIDKLPPSWKDFKRTMKHKKE-DISLEQLG 553

Query: 178 AALR-TKKLTKSKDLRVH 194
             LR  ++  K + ++ H
Sbjct: 554 NHLRLXEEYRKQEGIKNH 607


>BG587684 similar to GP|12858190|dbj evidence:NAS~putative~unclassifiable
           {Mus musculus}, partial (14%)
          Length = 819

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 11/16 (68%), Positives = 13/16 (80%)
 Frame = +3

Query: 2   MGSKWDIEKFTGDNDF 17
           M +KWDIE F G+NDF
Sbjct: 735 MDTKWDIEIFIGENDF 782


>TC91834 similar to PIR|T08416|T08416 disease resistance protein homolog
           F18B3.230 - Arabidopsis thaliana, partial (3%)
          Length = 803

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 112 MVESKAIIEQL-MEFNKILDDLENIEVQLEDEDK 144
           +VE + ++  L  +FN I DDLE+I+  L+D D+
Sbjct: 107 VVEERTLVTGLESDFNDIKDDLESIQSFLKDADR 208


>BI310662 homologue to SP|P12227|RPO DNA-directed RNA polymerase beta' chain
           (EC 2.7.7.6) (Fragment). [Garden pea] {Pisum sativum},
           partial (19%)
          Length = 688

 Score = 28.1 bits (61), Expect = 3.2
 Identities = 17/76 (22%), Positives = 35/76 (45%)
 Frame = +2

Query: 119 IEQLMEFNKILDDLENIEVQLEDEDKAILLFCAIPKSFESFKDTMLYGKEGTVILEEVQA 178
           +EQ++E   I     N+E +++  ++ I     IP  F       L G E T+    +  
Sbjct: 206 VEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGF-------LIGAELTIAQSRISL 364

Query: 179 ALRTKKLTKSKDLRVH 194
             + +K+ +S+ + +H
Sbjct: 365 VNKIQKVYRSQGVHIH 412


>TC81200 weakly similar to GP|13786069|gb|AAK39554.1 putative calcium
           channel {Arabidopsis thaliana}, partial (30%)
          Length = 1040

 Score = 27.7 bits (60), Expect = 4.2
 Identities = 12/39 (30%), Positives = 22/39 (55%)
 Frame = +3

Query: 77  KEPTAASIWAKLESLYMTKSLAHRQFLK*QLYLFRMVES 115
           K+P  +SIW K+  +Y++    H+ F   Q ++F  + S
Sbjct: 309 KKPPLSSIWLKMVLVYLSSFWIHQTFKVIQNFIFGSLNS 425


>BE999520 homologue to SP|O65781|GAE2 UDP-glucose 4-epimerase GEPI48 (EC
           5.1.3.2) (Galactowaldenase) (UDP- galactose
           4-epimerase)., partial (46%)
          Length = 499

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 23/77 (29%), Positives = 38/77 (48%), Gaps = 5/77 (6%)
 Frame = +3

Query: 123 MEFNKI-LDDLENIE-VQLEDEDKAILLFCAIPKSFESFKDTMLYGKE---GTVILEEVQ 177
           + F+K+ L D + +E +    +  A++ F  +    ES +  +LY      GT++L EV 
Sbjct: 165 LSFHKLDLRDRDGLEKIFSSTKFDAVIHFAGLKAVGESVQKPLLYYDNNLIGTIVLFEVM 344

Query: 178 AALRTKKLTKSKDLRVH 194
           AA   KKL  S    V+
Sbjct: 345 AAHGCKKLVFSSSATVY 395


>BG454361 
          Length = 693

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 11/38 (28%), Positives = 22/38 (56%)
 Frame = -2

Query: 33  CEKALKGEGLLPVTMSQVEKTDMVDKVRSAIVLCLGDK 70
           CE A+    LLP  ++ ++  + ++ +RS + LCL  +
Sbjct: 260 CEVAMSSSLLLPGWLTILQNVEFLEALRSQVDLCLSSE 147


>AW584129 weakly similar to GP|13235641|em S-adenosyl-L-methionine:salicylic
           acid carboxyl methyltransferase {Stephanotis
           floribunda}, partial (31%)
          Length = 568

 Score = 26.9 bits (58), Expect = 7.2
 Identities = 14/38 (36%), Positives = 21/38 (54%), Gaps = 3/38 (7%)
 Frame = +2

Query: 124 EFNKILDDLENIEVQLEDEDKAILLFC---AIPKSFES 158
           +FN I   L+N + +L+DE K  +  C    +P SF S
Sbjct: 362 DFNNIFKSLDNFKEKLQDEIKTKMSSCYFFGVPGSFYS 475


>TC79835 homologue to SP|P51082|CHSB_PEA Chalcone synthase 1B (EC 2.3.1.74)
           (Naringenin-chalcone synthase 1B). [Garden pea] {Pisum
           sativum}, complete
          Length = 1393

 Score = 26.6 bits (57), Expect = 9.4
 Identities = 15/46 (32%), Positives = 20/46 (42%)
 Frame = +1

Query: 174 EEVQAALRTKKLTKSKDLRVHEHGEGLSVLRGNDGGRGNRRKSGNK 219
           EE+    R     +SK +RVH    G     G  GG   R++  NK
Sbjct: 319 EEIHVLDRRDPERESKCMRVHGTFIGCKTRHGGCGGTKTRKRGSNK 456


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.323    0.138    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,331,952
Number of Sequences: 36976
Number of extensions: 64538
Number of successful extensions: 342
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of query: 246
length of database: 9,014,727
effective HSP length: 94
effective length of query: 152
effective length of database: 5,538,983
effective search space: 841925416
effective search space used: 841925416
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)