BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145329.1 - phase: 0
(236 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE204504 weakly similar to PIR|T47960|T479 hypothetical protein ... 79 2e-15
TC90500 similar to GP|15081707|gb|AAK82508.1 At1g02660/T14P4_9 {... 47 5e-06
BF635065 weakly similar to GP|11037008|gb latent nuclear antigen... 32 0.28
CB893523 similar to GP|13529464|gb| nucleolin {Mus musculus}, pa... 31 0.36
BE998677 homologue to PIR|T14076|T140 probable villin [imported]... 31 0.47
TC82216 similar to GP|16930419|gb|AAL31895.1 AT4g21800/F17L22_26... 30 1.1
TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome... 30 1.1
BI264305 weakly similar to PIR|T45516|T455 probable RNA-binding ... 29 1.4
TC77438 homologue to PIR|T06807|T06807 nucleosome assembly prote... 29 1.4
AA660846 similar to GP|21751020|dbj unnamed protein product {Hom... 29 1.8
TC87869 similar to GP|23504577|emb|CAD51456. chromosome condensa... 28 2.3
TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Atel... 28 2.3
TC85071 similar to GP|11994207|dbj|BAB01310. gene_id:MPN9.20~unk... 28 2.3
TC79394 weakly similar to PIR|T49019|T49019 probable RNA binding... 28 2.3
TC86146 homologue to GP|10334499|emb|CAC10211. hypothetical prot... 28 3.1
BQ751984 similar to GP|13561994|gb| fibroin 1 {Euagrus chisoseus... 28 3.1
TC87680 similar to SP|Q9ZSW9|TCTP_HEVBR Translationally controll... 28 3.1
TC86145 homologue to GP|10334499|emb|CAC10211. hypothetical prot... 28 3.1
BE124834 28 4.0
TC93366 similar to PIR|E96745|E96745 hypothetical protein T9N14.... 28 4.0
>BE204504 weakly similar to PIR|T47960|T479 hypothetical protein F15G16.70 -
Arabidopsis thaliana, partial (10%)
Length = 476
Score = 78.6 bits (192), Expect = 2e-15
Identities = 46/149 (30%), Positives = 76/149 (50%), Gaps = 14/149 (9%)
Frame = +3
Query: 71 DAFTAENADRTVKEGDGQNGNWVFKVFDLNSVWKG--------------EQESGDNDGDE 116
D EN T E W+ ++ ++ W+ + SG+ D D+
Sbjct: 30 DVNIEENMVETSNEERVNRAKWMERLVEIKKHWRNRLPKESVDMDVMCDDYTSGECDCDD 209
Query: 117 CDVCRVDEEVDDENEDEEIRFDRESFSRMLRRVTLVEARMYAHMSHLGNLAYSIPNIKQG 176
VC D + D+E +E+ DR+SFS+ L +V+L + ++Y+ ++ L N+AY IP IK
Sbjct: 210 DSVCIADYD-DEEEGGQEVTHDRDSFSKFLVQVSLSDTKLYSQLAFLCNMAYVIPQIKAQ 386
Query: 177 NLLKRCGLRFVTSSIEKKELAASIKKEET 205
L + L+F+TSS+EKK A +K + T
Sbjct: 387 ELRRYYSLQFITSSLEKKAAVAKLKAKLT 473
>TC90500 similar to GP|15081707|gb|AAK82508.1 At1g02660/T14P4_9 {Arabidopsis
thaliana}, partial (3%)
Length = 669
Score = 47.4 bits (111), Expect = 5e-06
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 31/151 (20%)
Frame = +3
Query: 1 MVTLCLLQSGIPGIVPLIT---SISATTTTSRANDHVHVHQSHVTTVRR--SNKSSMFSR 55
M T+CL GIVP I+ S+ T + A S V+ V R S++ S+FSR
Sbjct: 225 METMCLKT----GIVPSISIGGSLDTRDTRAAA--------STVSAVGREKSSQKSLFSR 368
Query: 56 F--------IGSSARNNCLA--AVNDAFTAENAD-RTVKEG-----DGQNGNWVFKVFDL 99
F + RN + +++DA +N + +TV + +GQ NWV K+ +
Sbjct: 369 FSFRYPLESLWPQRRNRTFSGLSLDDAVLEDNRETKTVGDDGEDCREGQRENWVLKILHV 548
Query: 100 NSVWKGEQ----------ESGDNDGDECDVC 120
+VWKGEQ ++ +N+GD+ VC
Sbjct: 549 KNVWKGEQGNHEREETITDNDENNGDDDQVC 641
>BF635065 weakly similar to GP|11037008|gb latent nuclear antigen {Human
herpesvirus 8}, partial (3%)
Length = 681
Score = 31.6 bits (70), Expect = 0.28
Identities = 26/97 (26%), Positives = 46/97 (46%)
Frame = +2
Query: 100 NSVWKGEQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRESFSRMLRRVTLVEARMYAH 159
N V EQE D+D D D DEE D+E+++EE ++E + ++VT+ E +
Sbjct: 338 NPVIPQEQEHDDDDDDVED----DEETDEEDDNEEAAVEQEE-QKEEKQVTMNELVQMDN 502
Query: 160 MSHLGNLAYSIPNIKQGNLLKRCGLRFVTSSIEKKEL 196
+ + ++ + LRFV +E K++
Sbjct: 503 VDEVDKEKQLAKDVVAQLDYQLEMLRFVREDVETKKI 613
>CB893523 similar to GP|13529464|gb| nucleolin {Mus musculus}, partial (2%)
Length = 869
Score = 31.2 bits (69), Expect = 0.36
Identities = 23/67 (34%), Positives = 31/67 (45%), Gaps = 7/67 (10%)
Frame = -2
Query: 25 TTTSRANDHVHVHQSHVTTVRRSNKSSMFSRFIGSSAR--NNCLAAVND-----AFTAEN 77
T S NDH +HV V NKS + SR + SA +NCL ++D + EN
Sbjct: 739 TDVSMGNDHF---DNHVWFVEALNKSGILSRVVSVSAAVVDNCLLNLDDYDVSASINDEN 569
Query: 78 ADRTVKE 84
+ KE
Sbjct: 568 TNNVKKE 548
>BE998677 homologue to PIR|T14076|T140 probable villin [imported] -
Arabidopsis thaliana, partial (1%)
Length = 599
Score = 30.8 bits (68), Expect = 0.47
Identities = 13/21 (61%), Positives = 18/21 (84%)
Frame = -3
Query: 172 NIKQGNLLKRCGLRFVTSSIE 192
NIKQ N+L RC +RF++SS+E
Sbjct: 453 NIKQYNMLIRCRIRFLSSSLE 391
>TC82216 similar to GP|16930419|gb|AAL31895.1 AT4g21800/F17L22_260
{Arabidopsis thaliana}, partial (31%)
Length = 702
Score = 29.6 bits (65), Expect = 1.1
Identities = 22/71 (30%), Positives = 34/71 (46%), Gaps = 4/71 (5%)
Frame = +2
Query: 76 ENADRTVKEGDGQNGNWVFKVFDLNSVWKGE----QESGDNDGDECDVCRVDEEVDDENE 131
EN D+ +E + G V L + + E +E D+D + DE+ DE+E
Sbjct: 272 ENMDKLRREMEKSGGETVVLSTGLKNKEEDEDEEDEEMDDDDNVDFGTYTEDEDAIDEDE 451
Query: 132 DEEIRFDRESF 142
DEE+ D+ SF
Sbjct: 452 DEEV--DKFSF 478
>TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome assembly
protein 1 {Atropa belladonna}, partial (46%)
Length = 583
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/35 (42%), Positives = 21/35 (59%)
Frame = +2
Query: 106 EQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRE 140
E + D DGDE D D++ DD+++DEE D E
Sbjct: 80 EVDEDDEDGDEED----DDDDDDDDDDEEDEDDEE 172
Score = 28.1 bits (61), Expect = 3.1
Identities = 10/27 (37%), Positives = 21/27 (77%)
Frame = +2
Query: 108 ESGDNDGDECDVCRVDEEVDDENEDEE 134
E+G++D D+ +V DE+ D+E++D++
Sbjct: 50 EAGESDFDDIEVDEDDEDGDEEDDDDD 130
Score = 27.7 bits (60), Expect = 4.0
Identities = 13/29 (44%), Positives = 19/29 (64%)
Frame = +2
Query: 105 GEQESGDNDGDECDVCRVDEEVDDENEDE 133
G++E D+D D+ D +E+ DDE EDE
Sbjct: 104 GDEEDDDDDDDDDDD---EEDEDDEEEDE 181
>BI264305 weakly similar to PIR|T45516|T455 probable RNA-binding protein sce3
- fission yeast (Schizosaccharomyces pombe), partial
(9%)
Length = 662
Score = 29.3 bits (64), Expect = 1.4
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 159 HMSHLGNLAYSIPNIKQGNLLKRCGLRFVTSSIEKKEL 196
+ +HLGNL+Y + N G L CG+ V IE +EL
Sbjct: 38 YTAHLGNLSYDVTNDAVGEYLADCGVINV-RLIEDREL 148
>TC77438 homologue to PIR|T06807|T06807 nucleosome assembly protein 1 - garden
pea, partial (93%)
Length = 1607
Score = 29.3 bits (64), Expect = 1.4
Identities = 14/30 (46%), Positives = 18/30 (59%)
Frame = +2
Query: 111 DNDGDECDVCRVDEEVDDENEDEEIRFDRE 140
D D DE D D+E +DE+EDE+ D E
Sbjct: 1040 DEDDDEDDDAEDDDEDEDEDEDEDDDEDEE 1129
>AA660846 similar to GP|21751020|dbj unnamed protein product {Homo sapiens},
partial (14%)
Length = 608
Score = 28.9 bits (63), Expect = 1.8
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -2
Query: 101 SVWKGEQESGDNDGDECDVCRVDEEVDDENEDEEIRFDRE 140
S+W + S +ND D+ ++EE+ +E+E+EE +D +
Sbjct: 550 SIWSMQVNSCNNDEDD-----LEEEIAEEDEEEEEYYDAD 446
>TC87869 similar to GP|23504577|emb|CAD51456. chromosome condensation
protein putative {Plasmodium falciparum 3D7}, partial
(0%)
Length = 1154
Score = 28.5 bits (62), Expect = 2.3
Identities = 19/62 (30%), Positives = 28/62 (44%), Gaps = 3/62 (4%)
Frame = +1
Query: 76 ENADRTVKEGDGQNGNWVF---KVFDLNSVWKGEQESGDNDGDECDVCRVDEEVDDENED 132
E+ D +GD + N V K D NS + + DNDGD+ D E+ ++
Sbjct: 472 EDIDSGGFDGDTETDNVVDAFDKDKDCNSGSSSDDDGSDNDGDDADADNTGEDSEENLVM 651
Query: 133 EE 134
EE
Sbjct: 652 EE 657
>TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Ateline
herpesvirus 3}, partial (8%)
Length = 986
Score = 28.5 bits (62), Expect = 2.3
Identities = 19/60 (31%), Positives = 32/60 (52%)
Frame = +3
Query: 75 AENADRTVKEGDGQNGNWVFKVFDLNSVWKGEQESGDNDGDECDVCRVDEEVDDENEDEE 134
A AD +E D ++G+ + D + E+E G+ D +E VDEE ++E E++E
Sbjct: 570 AGGADENGEEEDDEDGDDQDEDDDEDEDDDDEEEGGEEDEEE----GVDEEDNEEEEEDE 737
>TC85071 similar to GP|11994207|dbj|BAB01310. gene_id:MPN9.20~unknown
protein {Arabidopsis thaliana}, partial (28%)
Length = 958
Score = 28.5 bits (62), Expect = 2.3
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = -1
Query: 91 NWVFKVFDLNSVWKGEQESGDNDGDECDVCRVDEEVDDE 129
NW FK FD V G E G GDE + EV E
Sbjct: 202 NWGFKFFDERGVAIGADEIGGGGGDEGGAFALVAEVTTE 86
>TC79394 weakly similar to PIR|T49019|T49019 probable RNA binding protein -
Arabidopsis thaliana, partial (74%)
Length = 1909
Score = 28.5 bits (62), Expect = 2.3
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 32/141 (22%)
Frame = +2
Query: 105 GEQESGDNDGD---------ECDVCRVDEEVDDENEDEEIR--------FDRESFSRMLR 147
GEQ D D D E + V+EEV++E E+EE D E + +
Sbjct: 227 GEQVDLDGDNDQEESSEEEVEYEEVEVEEEVEEEEEEEEEEEVEEESKPLDEEDEADKKK 406
Query: 148 RVTLVEARMYAHMSHLGNLAY------------SIPNIKQGNLLK---RCGLRFVTSSIE 192
L+ + ++G + + S+ + + ++K G FVT +
Sbjct: 407 HAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEAKGYAFVT--FK 580
Query: 193 KKELAASIKKEETNGKDAGER 213
KELA++ KE N + G +
Sbjct: 581 TKELASNALKELNNSEFKGRK 643
>TC86146 homologue to GP|10334499|emb|CAC10211. hypothetical protein {Cicer
arietinum}, partial (95%)
Length = 1084
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 3/41 (7%)
Frame = +3
Query: 103 WKGEQ---ESGDNDGDECDVCRVDEEVDDENEDEEIRFDRE 140
W+G + GD+ D D VD+E DDE++D E ++ E
Sbjct: 234 WEGGSYLHDDGDDFDDLHDGTDVDDEDDDEDDDNEEDYEDE 356
>BQ751984 similar to GP|13561994|gb| fibroin 1 {Euagrus chisoseus}, partial
(3%)
Length = 548
Score = 28.1 bits (61), Expect = 3.1
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 94 FKVFDLNSVWKGEQESGDNDGDECDVCRVDEEVDD-ENEDEEIRFDRESFSRMLRRVTLV 152
F + L VW+ + GD+C C D+++ D + ED +D + R ++
Sbjct: 324 FLLVRLRLVWQQHRRLRLGSGDDCQACPDDDQLRDLDMEDCRCHYD-----FVYSRSYVL 488
Query: 153 EARMYAHMSHLG 164
R A +HLG
Sbjct: 489 ACRYLAPCNHLG 524
>TC87680 similar to SP|Q9ZSW9|TCTP_HEVBR Translationally controlled tumor
protein homolog (TCTP). [Para rubber tree] {Hevea
brasiliensis}, complete
Length = 729
Score = 28.1 bits (61), Expect = 3.1
Identities = 22/77 (28%), Positives = 37/77 (47%), Gaps = 3/77 (3%)
Frame = +2
Query: 90 GNWVFK-VFDLNSVWKGEQESGD-NDGDECDVCRVDEEVDDENEDEEIRFDRESF-SRML 146
G WV + D+N E GD +DG + +V + VD E+ FD++ F + M
Sbjct: 149 GKWVVQGAVDVNIGANPSAEGGDEDDGVDDQAVKVVDIVDTFRLQEQPTFDKKQFVTYMK 328
Query: 147 RRVTLVEARMYAHMSHL 163
R + L+ +++ A L
Sbjct: 329 RYIKLLTSKLEAEKQEL 379
>TC86145 homologue to GP|10334499|emb|CAC10211. hypothetical protein {Cicer
arietinum}, partial (91%)
Length = 1311
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/41 (36%), Positives = 23/41 (55%), Gaps = 3/41 (7%)
Frame = +1
Query: 103 WKGEQ---ESGDNDGDECDVCRVDEEVDDENEDEEIRFDRE 140
W+G + GD+ D D VD+E DDE++D E ++ E
Sbjct: 415 WEGGSYLHDDGDDFDDLHDGTDVDDEDDDEDDDNEEDYEDE 537
>BE124834
Length = 344
Score = 27.7 bits (60), Expect = 4.0
Identities = 18/44 (40%), Positives = 27/44 (60%)
Frame = +1
Query: 70 NDAFTAENADRTVKEGDGQNGNWVFKVFDLNSVWKGEQESGDND 113
+DA T N D+T +G G++GN+V F N+ KG+ ES N+
Sbjct: 13 SDACTGGN-DKTYPDGGGRSGNFV--KFLKNAKRKGKGESDGNN 135
>TC93366 similar to PIR|E96745|E96745 hypothetical protein T9N14.11
[imported] - Arabidopsis thaliana, partial (27%)
Length = 1082
Score = 27.7 bits (60), Expect = 4.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 21 ISATTTTSRANDHVHVHQSHVTTVRRSNKSSMFSRF 56
I+ TTTT+R N H + Q H N+ RF
Sbjct: 241 IATTTTTTRQNHHSQIRQIHGNCAYHLNRRVSHPRF 348
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.313 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,303,574
Number of Sequences: 36976
Number of extensions: 76734
Number of successful extensions: 617
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of query: 236
length of database: 9,014,727
effective HSP length: 93
effective length of query: 143
effective length of database: 5,575,959
effective search space: 797362137
effective search space used: 797362137
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC145329.1