Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145222.7 - phase: 0 
         (435 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BM814761 similar to GP|16604571|gb unknown protein {Arabidopsis ...   374  e-104
TC93207 similar to GP|16604571|gb|AAL24087.1 unknown protein {Ar...   268  3e-72
BE320540 similar to GP|16604571|gb unknown protein {Arabidopsis ...   234  6e-62
TC83565 similar to GP|16604571|gb|AAL24087.1 unknown protein {Ar...   155  2e-53
BF647285                                                              117  7e-27
BF631984 similar to PIR|E86188|E861 hypothetical protein [import...    55  4e-08
TC78100 similar to SP|P32291|FD3E_PHAAU Omega-3 fatty acid desat...    30  1.4
BI268395 similar to PIR|F71440|F714 probable glucanase - Arabido...    30  2.4
BQ151380 homologue to GP|1504034|dbj| KIAA0227 {Homo sapiens}, p...    29  4.1
TC87567 similar to GP|17065112|gb|AAL32710.1 Unknown protein {Ar...    28  5.3
TC77574 similar to GP|14532862|gb|AAK64113.1 putative pyrophosph...    28  5.3
AW574038 weakly similar to GP|2584795|emb|C MtN27 {Medicago trun...    28  6.9
TC92005 weakly similar to GP|18033111|gb|AAL56987.1 functional c...    28  6.9
AL382096 weakly similar to GP|9624461|gb putative calcium transp...    28  6.9
TC77189 homologue to GP|13124865|gb|AAK11734.1 serine/threonine/...    28  9.0
TC80799 similar to GP|15810137|gb|AAL07212.1 unknown protein {Ar...    28  9.0

>BM814761 similar to GP|16604571|gb unknown protein {Arabidopsis thaliana},
           partial (53%)
          Length = 674

 Score =  374 bits (960), Expect = e-104
 Identities = 177/224 (79%), Positives = 199/224 (88%), Gaps = 4/224 (1%)
 Frame = +1

Query: 153 YGTRVPLSSILPQVQMEAVLWGLGTAIGELPPYFISRAARLSGSRMDAMEELDSEDKGV- 211
           +G+++PLS IL QVQ+EAVLWG+GTAIGELPPYFISRAARLSGS++DAMEELD+E++G+ 
Sbjct: 1   HGSQIPLSIILIQVQLEAVLWGMGTAIGELPPYFISRAARLSGSKLDAMEELDTENEGII 180

Query: 212 ---LNQIKCWFFSHTQHLNFFTILVLASVPNPLFDLAGIMCGQFGIPFWNFFLATLIGKA 268
              LN+IK WF SH  HLNF TIL LASVPNPLFDLAGIMCGQFG+PFW FFLAT IGKA
Sbjct: 181 TTYLNRIKRWFLSHCHHLNFLTILALASVPNPLFDLAGIMCGQFGVPFWKFFLATFIGKA 360

Query: 269 IIKTHIQTVFIISVCNNQLLDWIENEFIWVLSHIPGFASVLPKLTANLHAMKDKYLKAPH 328
           +IKTHIQTVFIISVCNNQLL+WIENEFIWVL HIP FAS+LP + ANLHA+KDKYLKAPH
Sbjct: 361 LIKTHIQTVFIISVCNNQLLNWIENEFIWVLGHIPAFASILPSVIANLHAVKDKYLKAPH 540

Query: 329 PVSPNTKGKKWDFSFTSIWNTVVWLMLMNFFIKIVNSTAQTHLK 372
            VSP  KG +WDFS  SIWNTVVWLMLMNFF+KIVNSTAQ +LK
Sbjct: 541 QVSPKIKGTRWDFSIASIWNTVVWLMLMNFFVKIVNSTAQRYLK 672


>TC93207 similar to GP|16604571|gb|AAL24087.1 unknown protein {Arabidopsis
           thaliana}, partial (28%)
          Length = 742

 Score =  268 bits (685), Expect = 3e-72
 Identities = 132/132 (100%), Positives = 132/132 (100%)
 Frame = +3

Query: 1   MELENLTLTTQPFKTLKYSTLAVIQYIKKTMLYLLAKGGWLMLFSVAVGTLGVVLMTLGC 60
           MELENLTLTTQPFKTLKYSTLAVIQYIKKTMLYLLAKGGWLMLFSVAVGTLGVVLMTLGC
Sbjct: 342 MELENLTLTTQPFKTLKYSTLAVIQYIKKTMLYLLAKGGWLMLFSVAVGTLGVVLMTLGC 521

Query: 61  LHEKHLEEFLEYFRFGLWWVALGVASSIGLGSGLHTFVLYLGPHIALFTIKAMQCGRVDL 120
           LHEKHLEEFLEYFRFGLWWVALGVASSIGLGSGLHTFVLYLGPHIALFTIKAMQCGRVDL
Sbjct: 522 LHEKHLEEFLEYFRFGLWWVALGVASSIGLGSGLHTFVLYLGPHIALFTIKAMQCGRVDL 701

Query: 121 KSAPYDTIQLNR 132
           KSAPYDTIQLNR
Sbjct: 702 KSAPYDTIQLNR 737


>BE320540 similar to GP|16604571|gb unknown protein {Arabidopsis thaliana},
           partial (25%)
          Length = 339

 Score =  234 bits (596), Expect = 6e-62
 Identities = 112/112 (100%), Positives = 112/112 (100%)
 Frame = +3

Query: 182 LPPYFISRAARLSGSRMDAMEELDSEDKGVLNQIKCWFFSHTQHLNFFTILVLASVPNPL 241
           LPPYFISRAARLSGSRMDAMEELDSEDKGVLNQIKCWFFSHTQHLNFFTILVLASVPNPL
Sbjct: 3   LPPYFISRAARLSGSRMDAMEELDSEDKGVLNQIKCWFFSHTQHLNFFTILVLASVPNPL 182

Query: 242 FDLAGIMCGQFGIPFWNFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIEN 293
           FDLAGIMCGQFGIPFWNFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIEN
Sbjct: 183 FDLAGIMCGQFGIPFWNFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIEN 338


>TC83565 similar to GP|16604571|gb|AAL24087.1 unknown protein {Arabidopsis
           thaliana}, partial (27%)
          Length = 598

 Score =  155 bits (391), Expect(3) = 2e-53
 Identities = 72/94 (76%), Positives = 81/94 (85%)
 Frame = +2

Query: 23  VIQYIKKTMLYLLAKGGWLMLFSVAVGTLGVVLMTLGCLHEKHLEEFLEYFRFGLWWVAL 82
           +IQY+KKT  YLLAKGG LML SV VG LG++L+T+   HEKH EE L+YFRFGLWW+ L
Sbjct: 233 IIQYLKKTATYLLAKGGLLMLLSVVVGALGIMLITVEGPHEKHFEELLKYFRFGLWWITL 412

Query: 83  GVASSIGLGSGLHTFVLYLGPHIALFTIKAMQCG 116
           G+ASSIGLGSGLHTFVLYLGPHIA FTIKAMQCG
Sbjct: 413 GIASSIGLGSGLHTFVLYLGPHIAFFTIKAMQCG 514



 Score = 52.8 bits (125), Expect(3) = 2e-53
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +3

Query: 111 KAMQCGRVDLKSAPYDTIQLNRGPSWLDKNCSQ 143
           K     RVDL SAPYDTIQL+RGP+WLD +CSQ
Sbjct: 498 KPCSVARVDLXSAPYDTIQLDRGPTWLDMDCSQ 596



 Score = 40.8 bits (94), Expect(3) = 2e-53
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +1

Query: 1   MELENLTLTTQPFKTLKYSTLAVIQYIKK 29
           +EL+NLTLTTQPFKTLK+ TLA    +++
Sbjct: 166 LELDNLTLTTQPFKTLKFFTLAYYSILEE 252


>BF647285 
          Length = 338

 Score =  117 bits (294), Expect = 7e-27
 Identities = 63/67 (94%), Positives = 63/67 (94%)
 Frame = -3

Query: 369 THLKKQQESEVAALTKKSDSDTQ*NALIIIFAVHPARSKLKFKFQLFLKPPMEVTP*NLL 428
           THLKKQQESEVAALTKKSDSDTQ*NALIIIFAVHPAR KLKFKFQLFLKPPMEVTP*N  
Sbjct: 336 THLKKQQESEVAALTKKSDSDTQ*NALIIIFAVHPARXKLKFKFQLFLKPPMEVTP*NFF 157

Query: 429 ***IHRV 435
           ***I RV
Sbjct: 156 ***IXRV 136


>BF631984 similar to PIR|E86188|E861 hypothetical protein [imported] -
           Arabidopsis thaliana, partial (6%)
          Length = 220

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 22/29 (75%), Positives = 26/29 (88%)
 Frame = +2

Query: 64  KHLEEFLEYFRFGLWWVALGVASSIGLGS 92
           +H EE L+YFRFGLWW+ LG+ASSIGLGS
Sbjct: 134 QHFEELLKYFRFGLWWITLGIASSIGLGS 220


>TC78100 similar to SP|P32291|FD3E_PHAAU Omega-3 fatty acid desaturase
           endoplasmic reticulum (EC 1.14.99.-), partial (96%)
          Length = 1343

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 20/81 (24%), Positives = 35/81 (42%), Gaps = 2/81 (2%)
 Frame = +2

Query: 183 PPYFISRAARLSGSRMDAMEEL--DSEDKGVLNQIKCWFFSHTQHLNFFTILVLASVPNP 240
           P Y  +R+    GS  +   +L   SE K V+    CW       + F  +  L+ +  P
Sbjct: 638 PFYLWNRSPGKEGSHFNPYSKLFTPSERKDVITSTVCW------SIMFCLLTYLSLIKGP 799

Query: 241 LFDLAGIMCGQFGIPFWNFFL 261
           +     +M   +G+P+W F +
Sbjct: 800 I-----VMLKLYGVPYWIFIM 847


>BI268395 similar to PIR|F71440|F714 probable glucanase - Arabidopsis
           thaliana, partial (11%)
          Length = 377

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +2

Query: 56  MTLGCLHEKHLEEFLEYFRFGLWWVALGVASSIGLGSGLHTFVLYLGPHIALFTIKAMQC 115
           MT  C +   +   ++   FGL WV L   S+IG+  G  +F   L P   +  +K  + 
Sbjct: 122 MTEPCCNRFGVGNLVKIMMFGLCWVPLLTESAIGVNWGTVSF-RKLNPSTVVDLLKDNKI 298

Query: 116 GRVDLKSAPYDTIQLNRG 133
            +V L  A  D ++   G
Sbjct: 299 TKVKLFEAEADVLKALMG 352


>BQ151380 homologue to GP|1504034|dbj| KIAA0227 {Homo sapiens}, partial (4%)
          Length = 1185

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 34   LLAKGGWLMLF-SVAVGTLGVVLMTLGCLHEKHLEEFLEYFRFGLWWVALGVASSIGLGS 92
            L+ +G   M F SV V   G V +TL  L        + +F  GL WV++GVA +  +G 
Sbjct: 1060 LVIRGSRSMPFLSVPVSLCGRVRVTLASLSISSYVCAVVFFFAGLIWVSMGVALAGAVGW 881

Query: 93   G 93
            G
Sbjct: 880  G 878


>TC87567 similar to GP|17065112|gb|AAL32710.1 Unknown protein {Arabidopsis
           thaliana}, partial (82%)
          Length = 2117

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +3

Query: 80  VALGVASSIGLGSGLHT--FVLYLGPHIALFTIKAMQCGRVDLKSAPYDTIQLNRGPSWL 137
           V L    S+ + SGL +  F++YL  H  + TI  + CG+          + LN    W+
Sbjct: 771 VPLPAQLSLVISSGLISKEFIIYL-KHFRITTINWLSCGQGKAAKVSLQLLNLNLNLHWM 947

Query: 138 D 138
           D
Sbjct: 948 D 950


>TC77574 similar to GP|14532862|gb|AAK64113.1 putative pyrophosphate-dependent
            phosphofructo-1-kinase {Arabidopsis thaliana}, partial
            (87%)
          Length = 1926

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 7/47 (14%)
 Frame = +3

Query: 127  TIQLNRGPSWLD-------KNCSQFGPPLFQSEYGTRVPLSSILPQV 166
            T++L + P+  D       ++C + G P+F+  YGT    ++I PQV
Sbjct: 1581 TLRLMKSPTIWDA*LRLRYQSCVREGYPVFKKNYGTGTSTAAISPQV 1721


>AW574038 weakly similar to GP|2584795|emb|C MtN27 {Medicago truncatula},
           partial (45%)
          Length = 707

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -1

Query: 253 GIPFWNFFLATLIGKAIIKT--HIQTVFII 280
           G+  W FF +TL+GKA   T   +Q +FI+
Sbjct: 251 GLAKWKFFFSTLVGKAQTMTANALQNIFIM 162


>TC92005 weakly similar to GP|18033111|gb|AAL56987.1 functional candidate
           resistance protein KR1 {Glycine max}, partial (7%)
          Length = 858

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 21/80 (26%), Positives = 34/80 (42%)
 Frame = +1

Query: 241 LFDLAGIMCGQFGIPFWNFFLATLIGKAIIKTHIQTVFIISVCNNQLLDWIENEFIWVLS 300
           L D++   CG    P  N  + +++   + +  +Q   +   C   LL W  N     LS
Sbjct: 346 LNDISIERCGMLRFPKHNDKINSIVFSNVTQLSLQNCNLSDECLPILLKWFVNVKRLDLS 525

Query: 301 HIPGFASVLPKLTANLHAMK 320
           H   F ++LP+     H MK
Sbjct: 526 HNFNF-NILPECLNECHLMK 582


>AL382096 weakly similar to GP|9624461|gb putative calcium transporting
           ATPase {Ajellomyces capsulatus}, partial (9%)
          Length = 456

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
 Frame = +3

Query: 228 FFTILVLASVPNPLFDL-----AGIMCGQF--GIPFWNFFLATLIGKAIIKTHIQTVFII 280
           F+  L+L  VP  +F+      +G + G +  G   +   LAT++GKA + T + T +  
Sbjct: 129 FYHSLILYFVPVFIFNQDLVLSSGQLAGHWVWGTTIYTAVLATVLGKAALITDLWTKYTY 308

Query: 281 SVCNNQLLDWIENEFIWVLSHIPGFASVLPKL 312
                     I   FI+ L  I  + S+ PKL
Sbjct: 309 IA--------IPGSFIFWLVFIVLYGSIAPKL 380


>TC77189 homologue to GP|13124865|gb|AAK11734.1 serine/threonine/tyrosine
            kinase {Arachis hypogaea}, partial (95%)
          Length = 1788

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 12/38 (31%), Positives = 18/38 (46%)
 Frame = -2

Query: 60   CLHEKHLEEFLEYFRFGLWWVALGVASSIGLGSGLHTF 97
            C H+ +L  F   + F  WW  +GV    G+ +  H F
Sbjct: 1454 CCHDLNLSTFKHCYNFSKWWPNIGV----GIPAPSHDF 1353


>TC80799 similar to GP|15810137|gb|AAL07212.1 unknown protein {Arabidopsis
            thaliana}, partial (41%)
          Length = 1723

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 198  MDAMEELDSE---DKGVLNQIKCWFFSHTQHLNF 228
            MD + E++S    D+G LN+I  W+    +H+NF
Sbjct: 1533 MDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNF 1634


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.331    0.143    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,091,674
Number of Sequences: 36976
Number of extensions: 229255
Number of successful extensions: 1716
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of query: 435
length of database: 9,014,727
effective HSP length: 99
effective length of query: 336
effective length of database: 5,354,103
effective search space: 1798978608
effective search space used: 1798978608
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)


Medicago: description of AC145222.7