BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC145220.5 + phase: 0 /pseudo
(141 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fra... 116 8e-38
BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox ... 29 0.72
TC79752 similar to GP|11994670|dbj|BAB02898. gene_id:K7P8.17~unk... 29 0.72
TC86284 weakly similar to GP|21430614|gb|AAM50985.1 RE28286p {Dr... 28 1.6
TC80046 similar to SP|P22699|GUN6_DICDI Endoglucanase precursor ... 28 1.6
TC89508 similar to GP|18071414|gb|AAL58273.1 putative pre-mRNA s... 27 2.1
TC79507 similar to GP|14194103|gb|AAK56246.1 AT3g22390/MCB17_12 ... 27 2.8
TC80931 similar to GP|14190783|gb|AAF65166.2 putative phloem tra... 27 2.8
TC77801 weakly similar to GP|21536807|gb|AAM61139.1 unknown {Ara... 27 2.8
BG648846 weakly similar to GP|8843755|dbj| gene_id:MXK3.14~unkno... 27 3.6
TC87279 weakly similar to GP|8843755|dbj|BAA97303.1 gene_id:MXK3... 27 3.6
TC86541 similar to GP|21592369|gb|AAM64320.1 unknown {Arabidopsi... 26 4.7
TC85732 weakly similar to GP|5919185|gb|AAD56235.1| arabinogalac... 26 4.7
TC76341 similar to GP|7528270|gb|AAF63202.1| poly(A)-binding pro... 26 4.7
TC85731 weakly similar to GP|5919185|gb|AAD56235.1| arabinogalac... 26 4.7
BG644345 weakly similar to GP|19697333|gb putative protein poten... 26 6.1
TC91701 similar to GP|11141605|gb|AAG32022.1 LEUNIG {Arabidopsis... 26 6.1
TC92523 similar to PIR|T09892|T09892 hypothetical protein T22A6.... 26 6.1
TC84839 similar to GP|19386827|dbj|BAB86205. hypothetical protei... 26 6.1
TC78971 similar to GP|20260346|gb|AAM13071.1 unknown protein {Ar... 25 8.0
>CB065382 similar to PIR|T09671|T096 RPE15 protein - alfalfa (fragment),
partial (9%)
Length = 624
Score = 116 bits (291), Expect(2) = 8e-38
Identities = 61/88 (69%), Positives = 70/88 (79%)
Frame = -1
Query: 54 GQAST*SIASQVPFGPQV*FPSRCYGS*CRRMLRVEVHCKKTHRPRKIDL*E*RPSCRRQ 113
G+AST*S+ SQVP PQ+*FPSRC GS*CRRML E HC++ H PRK+D *E RPSC RQ
Sbjct: 402 GEAST*SVTSQVPV*PQM*FPSRCSGS*CRRMLCFETHCEEAH*PRKVDF*EQRPSCPRQ 223
Query: 114 SSSESRCCKHD*GI*GSSQIGRL*RCNS 141
SS+SRCC+HD*GI*GSS+ R * NS
Sbjct: 222 PSSKSRCCEHD*GI*GSSRT*RP*CYNS 139
Score = 56.2 bits (134), Expect(2) = 8e-38
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = -2
Query: 17 RMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAS 57
R P QQRQ QQARPTFPLIPMLYA+ LPTLLL+G +
Sbjct: 533 RNNHPPVHQQRQ*QQARPTFPLIPMLYAE*LPTLLLRGHCT 411
>BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox carteri f.
nagariensis}, partial (13%)
Length = 1223
Score = 28.9 bits (63), Expect = 0.72
Identities = 17/52 (32%), Positives = 22/52 (41%)
Frame = -3
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLL 52
PLP P +P ++ PP+ P FPL P+L LP LL
Sbjct: 288 PLPLLPPPLPPPPLLPLPLSDPPSAPPPPSPPSPRFPLSPLLLILPLPLPLL 133
>TC79752 similar to GP|11994670|dbj|BAB02898. gene_id:K7P8.17~unknown
protein {Arabidopsis thaliana}, partial (2%)
Length = 2137
Score = 28.9 bits (63), Expect = 0.72
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 1/57 (1%)
Frame = +1
Query: 3 PSGQPQVPVNAVVQR-MQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAST 58
P+ Q Q + +R +QQQ + QQQQ T LIP + A+ P + Q S+
Sbjct: 712 PNNQQQAYIRLAKERQLQQQQQQRYLQQQQLSATNALIPHVQAQAQPPISSPQQNSS 882
>TC86284 weakly similar to GP|21430614|gb|AAM50985.1 RE28286p {Drosophila
melanogaster}, partial (6%)
Length = 628
Score = 27.7 bits (60), Expect = 1.6
Identities = 17/44 (38%), Positives = 20/44 (44%), Gaps = 2/44 (4%)
Frame = +1
Query: 1 PLPSGQPQVPV--NAVVQRMQQQPPAQQRQQQQARPTFPLIPML 42
PLP QPQ+P N V + Q P Q Q P P IP +
Sbjct: 187 PLPITQPQLPTIPNLGVPTLPQVPTVPQIPQIPTVPGVPQIPQI 318
>TC80046 similar to SP|P22699|GUN6_DICDI Endoglucanase precursor (EC
3.2.1.4) (Endo-1 4-beta-glucanase) (Spore germination
protein 270-6), partial (11%)
Length = 643
Score = 27.7 bits (60), Expect = 1.6
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = +1
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARP 34
PLP PQ P Q+ Q+PP + Q+ RP
Sbjct: 268 PLPQRPPQRPPQRPPQKPPQRPPQKPPQRPPQRP 369
>TC89508 similar to GP|18071414|gb|AAL58273.1 putative pre-mRNA splicing
factor {Oryza sativa (japonica cultivar-group)}, partial
(35%)
Length = 1470
Score = 27.3 bits (59), Expect = 2.1
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = -3
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQQQQARP 34
PSG PQ +AVVQ +P QRQ+Q ++P
Sbjct: 1015 PSGSPQF--HAVVQICITKPKNHQRQEQVSQP 926
>TC79507 similar to GP|14194103|gb|AAK56246.1 AT3g22390/MCB17_12 {Arabidopsis
thaliana}, partial (11%)
Length = 2117
Score = 26.9 bits (58), Expect = 2.8
Identities = 11/19 (57%), Positives = 12/19 (62%)
Frame = +3
Query: 16 QRMQQQPPAQQRQQQQARP 34
Q QQPPAQ +Q QQ P
Sbjct: 1158 QIQSQQPPAQSQQSQQGHP 1214
>TC80931 similar to GP|14190783|gb|AAF65166.2 putative phloem transcription
factor M1 {Apium graveolens}, partial (67%)
Length = 1193
Score = 26.9 bits (58), Expect = 2.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 7 PQVPVNAVVQRMQQQPPAQQRQQQQ 31
PQ+ N + ++QQQ P Q+QQQQ
Sbjct: 608 PQLQQNQQLSQIQQQIPQLQQQQQQ 682
>TC77801 weakly similar to GP|21536807|gb|AAM61139.1 unknown {Arabidopsis
thaliana}, partial (12%)
Length = 1145
Score = 26.9 bits (58), Expect = 2.8
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -1
Query: 3 PSGQPQVPVNAV-VQRMQQQPPAQQRQQQQ 31
PS P P N Q+ QQPP Q QQQQ
Sbjct: 638 PSSLPPPPPNQYHFQQPHQQPPYHQLQQQQ 549
>BG648846 weakly similar to GP|8843755|dbj| gene_id:MXK3.14~unknown protein
{Arabidopsis thaliana}, partial (18%)
Length = 829
Score = 26.6 bits (57), Expect = 3.6
Identities = 14/37 (37%), Positives = 23/37 (61%)
Frame = +1
Query: 17 RMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLK 53
R++ Q P+Q + + RP+ P+IP L+P LLL+
Sbjct: 64 RIRTQTPSQ*GKVLRERPSTPMIP----NLIPNLLLR 162
>TC87279 weakly similar to GP|8843755|dbj|BAA97303.1 gene_id:MXK3.14~unknown
protein {Arabidopsis thaliana}, partial (39%)
Length = 1468
Score = 26.6 bits (57), Expect = 3.6
Identities = 14/37 (37%), Positives = 23/37 (61%)
Frame = +1
Query: 17 RMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLK 53
R++ Q P+Q + + RP+ P+IP L+P LLL+
Sbjct: 94 RIRTQTPSQ*GKVLRERPSTPMIP----NLIPNLLLR 192
>TC86541 similar to GP|21592369|gb|AAM64320.1 unknown {Arabidopsis
thaliana}, partial (72%)
Length = 688
Score = 26.2 bits (56), Expect = 4.7
Identities = 17/44 (38%), Positives = 24/44 (53%)
Frame = +3
Query: 15 VQRMQQQPPAQQRQQQQARPTFPLIPMLYAKLLPTLLLKGQAST 58
+ QQQPP QQQ+ P+ ML +LL +L L+G + T
Sbjct: 57 IHHQQQQPP-----QQQSPPS----TMLRQRLLTSLRLRGGSGT 161
>TC85732 weakly similar to GP|5919185|gb|AAD56235.1| arabinogalactan protein
Pop14A9 {Populus x canescens}, partial (23%)
Length = 1035
Score = 26.2 bits (56), Expect = 4.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 8 QVPVNAVVQRMQQQPPAQQRQQQQARP 34
Q+ V + Q+ QQQ P QR Q++A+P
Sbjct: 756 QLSVLLLPQQEQQQVP*SQRNQEEAKP 676
>TC76341 similar to GP|7528270|gb|AAF63202.1| poly(A)-binding protein {Cucumis
sativus}, partial (90%)
Length = 2501
Score = 26.2 bits (56), Expect = 4.7
Identities = 13/42 (30%), Positives = 20/42 (46%)
Frame = +3
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQARPTFPLIPML 42
PL P +P++A+ + PP QQR +PL+ L
Sbjct: 1827 PLRDVVPPMPIHALATALANAPPEQQR-TMLGEALYPLVDQL 1949
>TC85731 weakly similar to GP|5919185|gb|AAD56235.1| arabinogalactan protein
Pop14A9 {Populus x canescens}, partial (23%)
Length = 684
Score = 26.2 bits (56), Expect = 4.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 8 QVPVNAVVQRMQQQPPAQQRQQQQARP 34
Q+ V + Q+ QQQ P QR Q++A+P
Sbjct: 322 QLSVLLLPQQEQQQVP*SQRNQEEAKP 402
>BG644345 weakly similar to GP|19697333|gb putative protein potential
transcriptional repressor Not4hp - Mus musculus, partial
(7%)
Length = 635
Score = 25.8 bits (55), Expect = 6.1
Identities = 13/29 (44%), Positives = 16/29 (54%)
Frame = +1
Query: 3 PSGQPQVPVNAVVQRMQQQPPAQQRQQQQ 31
P Q Q + Q+ QQQ QQ+QQQQ
Sbjct: 307 PFSQQQQQLQFQQQQQQQQQQLQQQQQQQ 393
>TC91701 similar to GP|11141605|gb|AAG32022.1 LEUNIG {Arabidopsis
thaliana}, partial (18%)
Length = 1174
Score = 25.8 bits (55), Expect = 6.1
Identities = 11/32 (34%), Positives = 17/32 (52%)
Frame = +1
Query: 1 PLPSGQPQVPVNAVVQRMQQQPPAQQRQQQQA 32
P P G + + + ++QQQ QQ QQQ +
Sbjct: 46 PFPRGDTDMLMKLKLAQLQQQQQQQQHQQQSS 141
>TC92523 similar to PIR|T09892|T09892 hypothetical protein T22A6.120 -
Arabidopsis thaliana, partial (45%)
Length = 1327
Score = 25.8 bits (55), Expect = 6.1
Identities = 11/19 (57%), Positives = 13/19 (67%)
Frame = +2
Query: 107 RPSCRRQSSSESRCCKHD* 125
RPSC R SS S+ C H+*
Sbjct: 653 RPSCSRTSSQASKIC*HN* 709
>TC84839 similar to GP|19386827|dbj|BAB86205. hypothetical protein~similar
to Arabidopsis thaliana chromosome 5 T6I14_10, partial
(20%)
Length = 819
Score = 25.8 bits (55), Expect = 6.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 16 QRMQQQPPAQQRQQQQARPTF 36
Q+ QQQ QQ QQQQ P F
Sbjct: 205 QQQQQQQQYQQHQQQQQPPHF 267
>TC78971 similar to GP|20260346|gb|AAM13071.1 unknown protein {Arabidopsis
thaliana}, partial (48%)
Length = 2260
Score = 25.4 bits (54), Expect = 8.0
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 6 QPQVPVNAVVQRMQQQP-PAQQRQQQQ 31
QPQ P Q+ QQQ AQQ+QQQQ
Sbjct: 337 QPQQPQFQPQQQFQQQQFQAQQQQQQQ 417
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.352 0.154 0.540
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,735,049
Number of Sequences: 36976
Number of extensions: 68368
Number of successful extensions: 721
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of query: 141
length of database: 9,014,727
effective HSP length: 86
effective length of query: 55
effective length of database: 5,834,791
effective search space: 320913505
effective search space used: 320913505
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 53 (25.0 bits)
Medicago: description of AC145220.5