TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC145061.22 - phase: 0 /pseudo
         (604 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG453335 weakly similar to GP|18071369|g putative gag-pol polypr...   142  1e-40
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret...    82  8e-16
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot...    79  5e-15
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana...    38  0.010
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V...    30  2.0
BF005210                                                               30  2.7
TC88904 similar to GP|11994550|dbj|BAB02737. gene_id:MGD8.17~unk...    29  5.9
TC77271 similar to PIR|T07929|T07929 probable long-chain-fatty-a...    28  7.8

>BG453335 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
           sativa}, partial (11%)
          Length = 660

 Score =  142 bits (358), Expect(2) = 1e-40
 Identities = 86/154 (55%), Positives = 109/154 (69%)
 Frame = +2

Query: 48  MHRNAYKELKKKDCKTLFFILLEETL*EFLNPQDQMKLGIFLNGTMKEMLR*SR*SFSY* 107
           MH  + +    ++C +   +L++ETL EFLNPQDQ KL IF    MK M+R SR*SFS+*
Sbjct: 104 MHIKS*RRRIARNCSSFNRVLMKETLKEFLNPQDQRKLQIFWKNIMKVMIRWSR*SFSH* 283

Query: 108 EGNLS*CKWKMRKRLLITSPC*LML*IR*RFVVEQFLIRK*LRRL**LYLQGLLL*LWPY 167
           EG+L+*CKW+MR+RLLITSP * ML*IR*+ + +   I K LR+ *  YLQ L+L*   +
Sbjct: 284 EGSLN*CKWRMRRRLLITSPN*SML*IR*KLMEK*LQINKLLRKS*EHYLQDLIL*WLQF 463

Query: 168 KNQQM*IP*RLKNCIVLWRHMN*WCMKEVVKDQF 201
            NQ+M*  *RLKN  V WR +N*W M+E VKDQF
Sbjct: 464 MNQRM*KL*RLKN*KVPWRLIN*WFMREAVKDQF 565



 Score = 42.7 bits (99), Expect(2) = 1e-40
 Identities = 20/29 (68%), Positives = 23/29 (78%)
 Frame = +3

Query: 18 SVVMKNLFGAKDLFNIVQNGYDELGENPT 46
          SVVMKNLF A+DL  IVQNGY ++G N T
Sbjct: 3  SVVMKNLFEAQDLLEIVQNGYIDIGANAT 89



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 17/21 (80%), Positives = 19/21 (89%)
 Frame = +1

Query: 47  EMHRNAYKELKKKDCKTLFFI 67
           E+HRNA+KELKKKDCK LF I
Sbjct: 91  EVHRNAHKELKKKDCKELFLI 153


>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
           {Oryza sativa} [Oryza sativa (japonica cultivar-group)],
           partial (10%)
          Length = 823

 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 37/108 (34%), Positives = 67/108 (61%)
 Frame = +1

Query: 495 GKQPRTAFISTTTHRSKEVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKA 554
           G + + +F ST THR+K +L+ ++ D+ GP +V S G  +Y ++ +D+F + +WV  ++ 
Sbjct: 43  GNRKKVSF-STATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRY 219

Query: 555 KSGAFDIFQKFKFFVEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGV 602
           K+  F  F+K++  VE Q+GK++  L TD   E+    F +FC  +G+
Sbjct: 220 KNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGI 363


>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 718

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 50/158 (31%), Positives = 83/158 (51%), Gaps = 2/158 (1%)
 Frame = -3

Query: 449 NEDSWLWHYMFGHLNYISLNHLVDKEMILVVPKLDIPHKFYDTRLIGKQPRTAFISTTTH 508
           N+D+ LWH   GH +  +LN        L++P +   +K  +  ++GK  +  F  T+T 
Sbjct: 596 NKDA-LWHARLGHPHGRALN--------LMLPGVVFENKNCEACILGKHCKNVFPRTSTV 444

Query: 509 RSKEVLNVVYFDVNGPLEVPSMGRI--KYFISFLDEFSKNIWVCLIKAKSGAFDIFQKFK 566
             +   +++Y D+      PS+ R   KYF++F+DE SK  W+ LI +K    D F+ F+
Sbjct: 443 Y-ENCFDLIYTDL---WTAPSLSRDNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQ 276

Query: 567 FFVEKQSGKSITSLRTDGGGEYTIKVFEKFCEENGVIH 604
            +V       I  LR+D GGEYT   F+   + +G++H
Sbjct: 275 AYVTNHYHAKIKILRSDNGGEYTSYAFKSHLDHHGILH 162


>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
           (10%)
          Length = 624

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = +2

Query: 512 EVLNVVYFDVNGPLEVPSMGRIKYFISFLDEFSKNIWVCLIKAKSG-AFDIFQKFKFFVE 570
           EV +V   D  GP   PS    KY +  +D  SK  WV  I + +  A  + + FK  + 
Sbjct: 305 EVFDVWGIDFMGPF--PSSYNNKYILVAVDYVSK--WVEAIASPTNDATVVVKMFKSVIF 472

Query: 571 KQSGKSITSLRTDGGGEYTIKVFEKFCEENGVIH 604
            + G     + +DGG  +  KVFEK  ++NGV H
Sbjct: 473 PRFGVPRVVI-SDGGSHFINKVFEKLLKKNGVRH 571


>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
           vinifera}, partial (18%)
          Length = 567

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 389 NLLSVGQLVQKGYSITMKDNSLKLFDKNQRLVMKTPLAKNKTF*TDMK 436
           +LLSV QL+ KGY +  +     + D+N + V++  + K + F  D+K
Sbjct: 309 SLLSVPQLLTKGYKVLFEHEKCVIKDQNNKEVLRAQM-KARKFVLDLK 449


>BF005210 
          Length = 650

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 435 MKVAKLNCLSAIVNNEDSWLWHYMFGHLNYISLNHLVDK 473
           M+++ L+ L  +V  + SW WHY + + N I   + ++K
Sbjct: 345 MQLSLLSVLLGVVWGKGSWRWHYFWNYPNMIC*ENTLEK 461


>TC88904 similar to GP|11994550|dbj|BAB02737. gene_id:MGD8.17~unknown protein
            {Arabidopsis thaliana}, partial (12%)
          Length = 1431

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 23/83 (27%), Positives = 36/83 (42%), Gaps = 5/83 (6%)
 Frame = -1

Query: 436  KVAKLNCLSAIVNNEDSWLWHYMFGHLNYISLNHLVDKEMILVV-----PKLDIPHKFYD 490
            KV K  CL +I+     +L H+    ++Y+     V   + L+V     PK+ I + FYD
Sbjct: 1152 KVIKQRCLQSIIFE---YLQHFQTLSIHYLLCVSAVGYRLELIVL*YYVPKISIWYIFYD 982

Query: 491  TRLIGKQPRTAFISTTTHRSKEV 513
              L  + P    +    H   EV
Sbjct: 981  VPLYREAPTPFILLPEVHILIEV 913


>TC77271 similar to PIR|T07929|T07929 probable long-chain-fatty-acid--CoA
            ligase (EC 6.2.1.3) isoform 2 - rape, partial (94%)
          Length = 2486

 Score = 28.5 bits (62), Expect = 7.8
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -2

Query: 461  HLNYISLNHLVDKEMILVVPKLDIPHKFY-DTRLIGKQPRTAFISTTTHRSKEVLNVVYF 519
            H + +  + L    ++ +V +   PH+F  D  L+G + ++  +    H   EVL     
Sbjct: 1510 HPHLVQEDPLFQAYLVHLVMRQRFPHRFQSDHILVGHEHKSPHVGNFPHARIEVLLQTE* 1331

Query: 520  DVNGPLEVPSMGRIKY 535
            DV+ PL + S  R ++
Sbjct: 1330 DVHYPLNLASPYRTQF 1283


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.349    0.155    0.516 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,547,446
Number of Sequences: 36976
Number of extensions: 232061
Number of successful extensions: 2089
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 883
Number of HSP's gapped (non-prelim): 1308
length of query: 604
length of database: 9,014,727
effective HSP length: 102
effective length of query: 502
effective length of database: 5,243,175
effective search space: 2632073850
effective search space used: 2632073850
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 61 (28.1 bits)