TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144931.17 + phase: 0 /pseudo/partial
         (50 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC86012 homologue to PIR|T00795|T00795 26S proteasome regulatory...    61  8e-15

>TC86012 homologue to PIR|T00795|T00795 26S proteasome regulatory subunit
           [imported] - Arabidopsis thaliana, partial (59%)
          Length = 2134

 Score = 60.8 bits (146), Expect(2) = 8e-15
 Identities = 31/32 (96%), Positives = 31/32 (96%)
 Frame = +3

Query: 1   MATTLVSSAGGMLAMLNESHISLKIHALSXLN 32
           MATTLVSSAGGMLAMLNESHISLKIHALS LN
Sbjct: 159 MATTLVSSAGGMLAMLNESHISLKIHALSNLN 254



 Score = 33.9 bits (76), Expect(2) = 8e-15
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +1

Query: 33  IWSIASGQRSPQVSPS 48
           IWSIASGQRSPQV PS
Sbjct: 256 IWSIASGQRSPQVFPS 303


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.316    0.123    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,370,824
Number of Sequences: 36976
Number of extensions: 10056
Number of successful extensions: 48
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of query: 50
length of database: 9,014,727
effective HSP length: 26
effective length of query: 24
effective length of database: 8,053,351
effective search space: 193280424
effective search space used: 193280424
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)