BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144806.10 + phase: 0
(407 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC89241 similar to GP|9294456|dbj|BAB02675.1 contains similarity... 136 5e-66
BE322314 similar to GP|9294456|dbj contains similarity to zinc f... 191 3e-49
TC87325 similar to GP|18176187|gb|AAL60000.1 unknown protein {Ar... 88 7e-18
TC93528 similar to GP|20466490|gb|AAM20562.1 unknown protein {Ar... 55 5e-08
TC77620 similar to GP|10129643|emb|CAC08239. Pspzf zinc finger p... 54 8e-08
BE202606 similar to GP|4651204|dbj ring finger protein {Cicer ar... 51 7e-07
TC81723 weakly similar to GP|22655083|gb|AAM98132.1 putative RIN... 51 7e-07
TC77204 similar to GP|21536625|gb|AAM60957.1 RING-H2 zinc finger... 51 9e-07
TC78535 similar to GP|15028361|gb|AAK76657.1 unknown protein {Ar... 50 1e-06
TC86098 similar to GP|14719329|gb|AAK73147.1 putative RING-H2 fi... 50 1e-06
AW329822 similar to PIR|T00428|T004 hypothetical protein At2g475... 50 2e-06
TC85903 similar to PIR|B84530|B84530 probable RING zinc finger p... 50 2e-06
TC76690 similar to GP|21593806|gb|AAM65773.1 putative RING zinc ... 50 2e-06
TC83859 50 2e-06
TC77563 similar to GP|15450687|gb|AAK96615.1 AT5g59550/f2o15_210... 49 3e-06
TC78411 similar to PIR|T47692|T47692 hypothetical protein T22E16... 49 4e-06
TC90096 similar to PIR|T47832|T47832 hypothetical protein T2O9.6... 48 6e-06
AJ501352 similar to PIR|B84584|B845 probable RING zinc finger pr... 48 6e-06
BG452562 similar to GP|9293902|dbj contains similarity to RING z... 48 8e-06
TC85071 similar to GP|11994207|dbj|BAB01310. gene_id:MPN9.20~unk... 48 8e-06
>TC89241 similar to GP|9294456|dbj|BAB02675.1 contains similarity to zinc
finger proteins~gene_id:MSL1.13 {Arabidopsis thaliana},
partial (25%)
Length = 1276
Score = 136 bits (342), Expect(2) = 5e-66
Identities = 66/96 (68%), Positives = 75/96 (77%)
Frame = +2
Query: 308 GHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTATGGQQRPQSDANRQGEGTGSSAQTE 367
GHLFHVHCLRSWLERQHTCPTCRALVVP ENG T GGQQ QSD ++Q GTGS+ QTE
Sbjct: 221 GHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGHQQ--GTGSTGQTE 394
Query: 368 VGDGVARDNLSRHQARLQAAAAAASIYEKSYVYPSP 403
+G+GVA D+LSRHQARLQAA Y +S ++ P
Sbjct: 395 LGNGVATDSLSRHQARLQAACCCRLQYMRSLMFILP 502
Score = 133 bits (334), Expect(2) = 5e-66
Identities = 61/74 (82%), Positives = 67/74 (90%)
Frame = +1
Query: 238 NYGVPLHLIRELYETFRNFKVRISDYLRYRKITSNMNDRFPDATPEELNSNDLTCIICRE 297
NYG+PLHLIRELYETFRNFK RI+DY+RYRKITSNMNDRFP+AT EELN++D TCIICRE
Sbjct: 10 NYGIPLHLIRELYETFRNFKARIADYIRYRKITSNMNDRFPEATSEELNASDATCIICRE 189
Query: 298 EMTTAKKLICGHLF 311
EMT AKKLIC F
Sbjct: 190 EMTAAKKLICXTSF 231
>BE322314 similar to GP|9294456|dbj contains similarity to zinc finger
proteins~gene_id:MSL1.13 {Arabidopsis thaliana}, partial
(20%)
Length = 402
Score = 191 bits (486), Expect = 3e-49
Identities = 95/103 (92%), Positives = 100/103 (96%)
Frame = +2
Query: 16 LAITYHAFNSRSQFYPAMVYLATSKISLVLLLNMALVIMCVLWQLTKKVFLGSLREAEVE 75
LAI YHAFNSR QFYPAMVYL+TSKISLVLLLNM LVIMCVLWQLTKKVFLG+LREAEVE
Sbjct: 92 LAIAYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCVLWQLTKKVFLGNLREAEVE 271
Query: 76 RLNEQAWREVMEILFAITIFRQDFSITFLAMVTALLLIKALHW 118
RLNEQ+WREVMEILFAITIFRQDFS+TF+AMVTALLLIKALHW
Sbjct: 272 RLNEQSWREVMEILFAITIFRQDFSVTFVAMVTALLLIKALHW 400
>TC87325 similar to GP|18176187|gb|AAL60000.1 unknown protein {Arabidopsis
thaliana}, partial (50%)
Length = 1568
Score = 87.8 bits (216), Expect = 7e-18
Identities = 62/187 (33%), Positives = 87/187 (46%), Gaps = 13/187 (6%)
Frame = +3
Query: 207 EKKPVFTFYLELVRDLLHLSMYMCFFLAIFINYGVPLHLIRELYETFRNFKV-------R 259
E K + L D+ M + +L I+ +G+ HL+ + F N + R
Sbjct: 66 EWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVL--FLNIRALLSAMINR 239
Query: 260 ISDYLRYRKITSNMNDRFPDATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSW 319
I ++R R ++ PDAT EEL + C ICRE M AKKL C HLFH+ CLRSW
Sbjct: 240 IKGFIRLRIALGALHAALPDATTEELRGYEDECAICREPMAKAKKLNCNHLFHLACLRSW 419
Query: 320 LER----QHTCPTCRALVVPSENGPTATGGQQRPQSDANRQGEGTGSSAQ--TEVGDGVA 373
L++ +TCPTCR P G RP+++ N S Q ++ G
Sbjct: 420 LDQGLTEMYTCPTCRK--------PLFAG---RPENETNSSTGVISSDEQLARQMSAGFD 566
Query: 374 RDNLSRH 380
R N +RH
Sbjct: 567 RQNSARH 587
>TC93528 similar to GP|20466490|gb|AAM20562.1 unknown protein {Arabidopsis
thaliana}, partial (24%)
Length = 755
Score = 55.1 bits (131), Expect = 5e-08
Identities = 24/54 (44%), Positives = 33/54 (60%)
Frame = +3
Query: 280 ATPEELNSNDLTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALV 333
AT E++ + C IC+E+M + L C H+F C+ W ER+ TCP CRALV
Sbjct: 132 ATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALV 293
>TC77620 similar to GP|10129643|emb|CAC08239. Pspzf zinc finger protein-like
{Arabidopsis thaliana}, partial (26%)
Length = 1958
Score = 54.3 bits (129), Expect = 8e-08
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Frame = +3
Query: 286 NSNDLTCIICREEMTTAKK---LICGHLFHVHCLRSWLERQHTCPTCRALVVPSEN 338
N +D+ C IC+EE + L+C H +HV C++ WL ++ CP C+A V PS +
Sbjct: 1596 NKDDIKCCICQEEYVEEDEVGSLLCEHKYHVVCIQQWLRLKNWCPICKASVTPSSS 1763
>BE202606 similar to GP|4651204|dbj ring finger protein {Cicer arietinum},
partial (87%)
Length = 564
Score = 51.2 bits (121), Expect = 7e-07
Identities = 21/58 (36%), Positives = 32/58 (54%), Gaps = 3/58 (5%)
Frame = +1
Query: 279 DATPEELNSNDLTCIICREEMTTAKK---LICGHLFHVHCLRSWLERQHTCPTCRALV 333
+ T EEL D+ C +C++E+T +K L C H +H C+ W+ +TCP LV
Sbjct: 385 ELTEEELKEKDVVCAVCKDEVTVEEKVGKLPCSHCYHGDCILPWMNISNTCPCLSVLV 558
>TC81723 weakly similar to GP|22655083|gb|AAM98132.1 putative RING zinc
finger protein {Arabidopsis thaliana}, partial (44%)
Length = 1007
Score = 51.2 bits (121), Expect = 7e-07
Identities = 23/75 (30%), Positives = 37/75 (48%), Gaps = 3/75 (4%)
Frame = +3
Query: 288 NDLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTATG 344
+D C IC E + A+++ C H++H C+ WL + ++CP CR + P G G
Sbjct: 594 SDSHCPICIERFELGSKAREMACKHIYHSDCIVPWLIQHNSCPVCRVELPPHGRGSRNWG 773
Query: 345 GQQRPQSDANRQGEG 359
G+ + N G G
Sbjct: 774 GRNDNSTGQNNNGRG 818
>TC77204 similar to GP|21536625|gb|AAM60957.1 RING-H2 zinc finger
protein-like {Arabidopsis thaliana}, partial (30%)
Length = 1218
Score = 50.8 bits (120), Expect = 9e-07
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +3
Query: 284 ELNSNDLTCIICREEM--TTAKKLI--CGHLFHVHCLRSWLERQHTCPTCRALVVPSENG 339
++ + L C +C E T +LI C H+FH C+ WL TCP CRA +VP + G
Sbjct: 378 KIGKDVLECAVCLMEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVP-QPG 554
Query: 340 PTATGGQQRPQSDANRQGE 358
+ G + Q D Q +
Sbjct: 555 DSVHGVPESQQQDVEAQND 611
>TC78535 similar to GP|15028361|gb|AAK76657.1 unknown protein {Arabidopsis
thaliana}, partial (39%)
Length = 1295
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/78 (29%), Positives = 40/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 288 NDLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENGPTATG 344
+D C +C+E+ + A+++ C H++H C+ WL + ++CP CR + P G ++
Sbjct: 714 SDSHCPVCKEKFELGSEAREMPCDHIYHSECIVPWLVQHNSCPVCRVELPP--QGQMSSR 887
Query: 345 GQQRPQSDANRQGEGTGS 362
G R S N G S
Sbjct: 888 GSSRSNSGGNGSSRGRES 941
>TC86098 similar to GP|14719329|gb|AAK73147.1 putative RING-H2 finger
protein {Oryza sativa}, partial (42%)
Length = 1610
Score = 50.4 bits (119), Expect = 1e-06
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = +2
Query: 283 EELNSNDLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSENG 339
EE S +L C +C+EE A++L C HL+H C+ WL +++CP CR + N
Sbjct: 572 EEHVSCELHCAVCKEEFELHAEARELPCKHLYHSDCILPWLTVRNSCPVCRHELPSDLNN 751
Query: 340 PTAT 343
P T
Sbjct: 752 PLET 763
>AW329822 similar to PIR|T00428|T004 hypothetical protein At2g47560
[imported] - Arabidopsis thaliana, partial (27%)
Length = 553
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Frame = +1
Query: 277 FPDATPEELNSNDLTCIICREEMTTAK--KLI--CGHLFHVHCLRSWLERQHTCPTCRAL 332
+P+ PE C +C E + + +++ C H FH C+ W TCP CRA
Sbjct: 226 YPENAPE--------CAVCLSEFESGETGRVLPKCKHSFHTECIDMWFHSHDTCPLCRAP 381
Query: 333 VVPSENGPT-----------ATGGQQRPQSDANRQGEGTGSSA 364
V P +N P ++ G ++ NR G+ GSS+
Sbjct: 382 VEPMQNRPDVVINVCEPETGSSSGSTEDVNNENRAGKEVGSSS 510
>TC85903 similar to PIR|B84530|B84530 probable RING zinc finger protein
[imported] - Arabidopsis thaliana, partial (26%)
Length = 2572
Score = 50.1 bits (118), Expect = 2e-06
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Frame = +3
Query: 250 YETFRNFKVRISDY---LRYRKITSNMNDRFPDATPEELNSNDLTCIICREEMTTAKKL- 305
YE + RI D L I M RF + E +S+ C IC+EE + L
Sbjct: 2007 YEELLALEERIGDVSTGLSEDIINKLMKQRFYMSLMTESSSDLEPCCICQEEYVDGQNLG 2186
Query: 306 --ICGHLFHVHCLRSWLERQHTCPTCRALVVPSENG 339
CGH FH +C+ WL +++ CP C+ + S G
Sbjct: 2187 LLDCGHEFHSNCITQWLMQKNLCPICKTTALAS*RG 2294
>TC76690 similar to GP|21593806|gb|AAM65773.1 putative RING zinc finger
protein {Arabidopsis thaliana}, partial (22%)
Length = 1303
Score = 50.1 bits (118), Expect = 2e-06
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Frame = +3
Query: 277 FPDATPEELNSNDLTCIICREEMTTAK--KLI--CGHLFHVHCLRSWLERQHTCPTCRAL 332
+P+ PE C +C E + + +++ C H FH C+ W TCP CRA
Sbjct: 360 YPENAPE--------CAVCLSEFESGETGRVLPKCKHSFHTECIDMWFHSHDTCPLCRAP 515
Query: 333 VVPSENGPT-----------ATGGQQRPQSDANRQGEGTGSSA 364
V P +N P ++ G ++ NR G+ GSS+
Sbjct: 516 VEPMQNRPDVVINVCEPETGSSSGSTEDVNNENRAGKEVGSSS 644
>TC83859
Length = 554
Score = 49.7 bits (117), Expect = 2e-06
Identities = 28/86 (32%), Positives = 38/86 (43%), Gaps = 10/86 (11%)
Frame = +3
Query: 260 ISDYLRYRKITSNMNDRFP------DATPEELNSNDLTCIICR---EEMTTAKKLICGHL 310
+ D L Y + FP D E + D+ C++C EE L C H+
Sbjct: 111 VLDILTYYPFYKLHDSNFPIIGEMYDIYNYEHTNEDVECVVCLCKIEEGDEISVLRCDHM 290
Query: 311 FHVHCLRSWLE-RQHTCPTCRALVVP 335
+H HCL WL + HTCP CR + P
Sbjct: 291 YHKHCLDKWLSFKNHTCPLCRESLRP 368
>TC77563 similar to GP|15450687|gb|AAK96615.1 AT5g59550/f2o15_210
{Arabidopsis thaliana}, partial (39%)
Length = 1468
Score = 49.3 bits (116), Expect = 3e-06
Identities = 20/63 (31%), Positives = 37/63 (57%), Gaps = 3/63 (4%)
Frame = +2
Query: 279 DATPEELNSNDLTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335
+ T E+ S ++ C +C+E+ + A+K+ C HL+H C+ WL +++CP CR +
Sbjct: 581 EITDSEMES-EIHCAVCKEQFELGSEARKMPCNHLYHSDCILPWLSMRNSCPVCRHELPS 757
Query: 336 SEN 338
+N
Sbjct: 758 DQN 766
>TC78411 similar to PIR|T47692|T47692 hypothetical protein T22E16.190 -
Arabidopsis thaliana, partial (81%)
Length = 1378
Score = 48.9 bits (115), Expect = 4e-06
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Frame = +2
Query: 267 RKITSNMNDRFPDATPEELNSN------------DLTCIICREEMTTA---KKLICGHLF 311
+K +S+M P + E+ N +LTC +C E++ + L C H F
Sbjct: 767 QKSSSSMQQATPSTSAEKTQDNLNAVGNSKASDDELTCSVCLEQVNVGDVLRSLPCLHQF 946
Query: 312 HVHCLRSWLERQHTCPTCR 330
H C+ WL +Q TCP C+
Sbjct: 947 HASCIDPWLRQQGTCPVCK 1003
>TC90096 similar to PIR|T47832|T47832 hypothetical protein T2O9.60 -
Arabidopsis thaliana, partial (13%)
Length = 676
Score = 48.1 bits (113), Expect = 6e-06
Identities = 19/49 (38%), Positives = 29/49 (58%), Gaps = 3/49 (6%)
Frame = +1
Query: 292 CIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPSE 337
C +C+E ++ AK+L C HL+H C+ WL + +CP CR +V E
Sbjct: 376 CAVCKETVSVDEEAKQLPCDHLYHADCITPWLRIRSSCPLCRCGIVEDE 522
>AJ501352 similar to PIR|B84584|B845 probable RING zinc finger protein
[imported] - Arabidopsis thaliana, partial (17%)
Length = 607
Score = 48.1 bits (113), Expect = 6e-06
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 12/128 (9%)
Frame = +3
Query: 222 LLHLSMYMCFFLAIFINYG--VPLHLIRELYETFRNFKVRISDYLRYRKITSNMNDRFPD 279
+L + ++ F L +++ + P+HL+ +N + R R I S + + +
Sbjct: 189 VLSIMFFLTFILLVYVKFCRVTPIHLLNPNSLNLQNNLGQT----RSRSINSGVEQKVIE 356
Query: 280 ATPE------ELNSNDLTCIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTC 329
P + + L C +C + + L C H FH++C+ WLE TCP C
Sbjct: 357 TLPFFKFSSLKGSKQGLECTVCLSKFEDEEILRLLPKCKHAFHMNCIDKWLESHSTCPLC 536
Query: 330 RALVVPSE 337
R +V S+
Sbjct: 537 RYMVEESD 560
>BG452562 similar to GP|9293902|dbj contains similarity to RING zinc finger
protein~gene_id:MVE11.15 {Arabidopsis thaliana}, partial
(59%)
Length = 664
Score = 47.8 bits (112), Expect = 8e-06
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 280 ATPEELNSNDLTCIICREEMTTAKKLI----CGHLFHVHCLRSWLERQHTCPTCR 330
+T +L + D C+IC E T +K+ C H FHV C+ WL+ +CP CR
Sbjct: 410 STELKLPTLDTECVICLSEFTKGEKVRILPKCNHGFHVRCIDKWLKSHSSCPKCR 574
>TC85071 similar to GP|11994207|dbj|BAB01310. gene_id:MPN9.20~unknown
protein {Arabidopsis thaliana}, partial (28%)
Length = 958
Score = 47.8 bits (112), Expect = 8e-06
Identities = 19/55 (34%), Positives = 31/55 (55%), Gaps = 3/55 (5%)
Frame = +2
Query: 279 DATPEELNSNDLTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCR 330
+ T E L S+ C +C++ AK++ C H++H C+ WLE ++CP CR
Sbjct: 695 EVTGELLESDSSQCAVCKDTFALGEKAKQMPCKHIYHDDCILPWLELHNSCPVCR 859
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.327 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,196,697
Number of Sequences: 36976
Number of extensions: 200606
Number of successful extensions: 1904
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 1873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1888
length of query: 407
length of database: 9,014,727
effective HSP length: 98
effective length of query: 309
effective length of database: 5,391,079
effective search space: 1665843411
effective search space used: 1665843411
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC144806.10