TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144766.5 + phase: 0 
         (393 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC90333 similar to PIR|T11652|T11652 probable transitional endop...    28  8.0

>TC90333 similar to PIR|T11652|T11652 probable transitional endoplasmic
           reticulum ATPase - fission yeast (Schizosaccharomyces
           pombe), partial (47%)
          Length = 1028

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 20/71 (28%), Positives = 32/71 (44%)
 Frame = +1

Query: 17  QRIWKLAENKGVHADVSSKRAGNCGRKRVVDLDRVRDIPLKKRTTIRDLSEALDVSRGTL 76
           QR  KLA  + + AD+   +A     +  +D D    +P     T R   EA+ ++R   
Sbjct: 517 QRAVKLAIKEAITADIHRTKAREAAGEEAMDEDEEDPVP---ELTKRHFEEAMQMAR--- 678

Query: 77  SRCIRSKEIRK 87
            R +   EIR+
Sbjct: 679 -RSVSDVEIRR 708


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.321    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,243,084
Number of Sequences: 36976
Number of extensions: 146501
Number of successful extensions: 623
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of query: 393
length of database: 9,014,727
effective HSP length: 98
effective length of query: 295
effective length of database: 5,391,079
effective search space: 1590368305
effective search space used: 1590368305
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)