TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144765.4 - phase: 0 /pseudo
         (364 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, pa...    45  3e-05
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly...    42  3e-04

>BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, partial (33%)
          Length = 560

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 35/72 (48%), Positives = 39/72 (53%)
 Frame = +1

Query: 146 LNSLEI*A*FASGHLRV*N*EC*RLTVNF*RVLKRHRKLMSSL*TCWLLVIRLKMVTLKS 205
           LNS E *  F     RV*N  C*R T NF  V KR R+ M S *   L +IRLKMV LK 
Sbjct: 70  LNSSET*VWFVKCRHRV*NWGC*RSTTNFWIVSKRLRRWM*SW*I*CLGIIRLKMVILKL 249

Query: 206 MTMVC*DSEVEF 217
           M   C    +E+
Sbjct: 250 MIKECCSFGIEY 285


>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 736

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 42/106 (39%), Positives = 50/106 (46%)
 Frame = +3

Query: 33  LWFTVMRPSWV*EVYLCKMVKW*LMLQGS*ELMRRITRRMI*SWRLWSLY*RYGDITCMV 92
           +WF   R S  *  Y   M +     QGS*E MR  T  MI* W      *R+G  TCMV
Sbjct: 48  MWFIQTRLSLD*VAY*PSMRRSSPTRQGS*ENMRETTPPMI*KWLR*YSP*RFGAHTCMV 227

Query: 93  RGLRCLVITRV*SICSIRKN*I*GNEGGSNY*KIMTLI*IIIQVKL 138
              R +   +V*SI     +* *G  GG N *       +II+ KL
Sbjct: 228 PRFRYIRTIKV*SIFLPSLS*T*GRGGGWNS*LTTI*TSLIIREKL 365


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.379    0.173    0.672 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,892,006
Number of Sequences: 36976
Number of extensions: 151762
Number of successful extensions: 1786
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1107
Number of HSP's gapped (non-prelim): 745
length of query: 364
length of database: 9,014,727
effective HSP length: 97
effective length of query: 267
effective length of database: 5,428,055
effective search space: 1449290685
effective search space used: 1449290685
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.7 bits)
S2: 59 (27.3 bits)