TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144765.1 + phase: 0 /pseudo
         (52 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far...    26  2.8
BF650479 homologue to PIR|T06643|T066 hypothetical protein T20K1...    26  3.7

>TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far-red
           impaired response protein {Oryza sativa}, partial (7%)
          Length = 1244

 Score = 26.2 bits (56), Expect = 2.8
 Identities = 11/29 (37%), Positives = 18/29 (61%)
 Frame = +1

Query: 2   EEANKFWLAYSFRVGFGVRVRFANKREDG 30
           EE  ++++ Y+ RVGFGV    +   +DG
Sbjct: 238 EEVIRYYMNYANRVGFGVTKISSKNADDG 324


>BF650479 homologue to PIR|T06643|T066 hypothetical protein T20K18.200 -
           Arabidopsis thaliana, partial (13%)
          Length = 580

 Score = 25.8 bits (55), Expect = 3.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 2   EEANKFWLAYSFRVGFGVRV 21
           E A KF+  Y+ RVGF VRV
Sbjct: 422 EAARKFYAEYARRVGFVVRV 481


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,802,801
Number of Sequences: 36976
Number of extensions: 15916
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of query: 52
length of database: 9,014,727
effective HSP length: 28
effective length of query: 24
effective length of database: 7,979,399
effective search space: 191505576
effective search space used: 191505576
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)