TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144730.5 + phase: 0 /pseudo
         (146 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW687028 weakly similar to GP|9909176|dbj| hypothetical protein~...    54  3e-08
TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far...    41  2e-04
BG449141 similar to GP|15983442|gb At1g10240/F14N23_12 {Arabidop...    32  0.12
TC83834 similar to PIR|G96565|G96565 F6D8.26 [imported] - Arabid...    31  0.20
TC77822 weakly similar to GP|21536834|gb|AAM61166.1 unknown {Ara...    27  2.9
TC89654 weakly similar to PIR|T05644|T05644 hypothetical protein...    26  6.5
TC90471 similar to PIR|T00588|T00588 hypothetical protein At2g30...    25  8.5

>AW687028 weakly similar to GP|9909176|dbj| hypothetical protein~similar to
           Arabidopsis thaliana F20D10.300, partial (11%)
          Length = 662

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 29/96 (30%), Positives = 46/96 (47%)
 Frame = +1

Query: 2   DSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPK 61
           D+TYK N Y  P+    G      T   G      E  E++ WVL    + + +K   PK
Sbjct: 16  DTTYKKNKYNYPLCIFSGCNHHSQTIIFGVALLEDETIESYKWVLNRFLECMENKF--PK 189

Query: 62  VIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQ 97
            +VTD D S+ + +  VFP++    C +H+  N ++
Sbjct: 190 AVVTDGDGSMREAIKQVFPDASHRLCAWHLHKNAQE 297


>TC82456 weakly similar to GP|18057159|gb|AAL58182.1 putative far-red
           impaired response protein {Oryza sativa}, partial (7%)
          Length = 1244

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 23/97 (23%), Positives = 44/97 (44%)
 Frame = +2

Query: 1   MDSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMP 60
           +D+TY T+ Y +P+   VGV     T  +G    ++   +   W+    R L     + P
Sbjct: 875 LDTTYLTSKYDLPLVPFVGVNHHGQTILLGCAILSNLDAKTLTWL--FTRWLECMHGHAP 1048

Query: 61  KVIVTDRDMSLMKEVANVFPESYAMNCYFHVQANVKQ 97
             I+T+ D ++   +   FP++    C +H+   V +
Sbjct: 1049NGIITEEDKAMKNAIEVAFPKARHRWCLWHIMKKVPE 1159


>BG449141 similar to GP|15983442|gb At1g10240/F14N23_12 {Arabidopsis
           thaliana}, partial (33%)
          Length = 690

 Score = 31.6 bits (70), Expect = 0.12
 Identities = 20/92 (21%), Positives = 41/92 (43%)
 Frame = +3

Query: 2   DSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLKMLRKLLTSKMNMPK 61
           D+T++   + MP+   VG+    +    G      E   +F W +K     +  K   P+
Sbjct: 393 DTTHRLTAFDMPLGLWVGINNYGMPCFFGCVLLRDETVRSFSWAIKAFLGFMNGK--APQ 566

Query: 62  VIVTDRDMSLMKEVANVFPESYAMNCYFHVQA 93
            I+TD+++ L + ++   P +    C + + A
Sbjct: 567 TILTDQNICLKEALSAEMPMTKHAFCIWMIVA 662


>TC83834 similar to PIR|G96565|G96565 F6D8.26 [imported] - Arabidopsis
           thaliana, partial (24%)
          Length = 1032

 Score = 30.8 bits (68), Expect = 0.20
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 2   DSTYKTNMYKMPMFEVVGVTLTDLTYSVGFGFETHEKEENFVWVLK 47
           D+TY  N Y++P+  +VG+     +  +G G    E  E++ W+ +
Sbjct: 852 DNTYLVNKYEIPLVALVGINHHGQSVLLGCGLLAGEIIESYKWLFR 989


>TC77822 weakly similar to GP|21536834|gb|AAM61166.1 unknown {Arabidopsis
            thaliana}, partial (33%)
          Length = 2391

 Score = 26.9 bits (58), Expect = 2.9
 Identities = 19/60 (31%), Positives = 30/60 (49%), Gaps = 8/60 (13%)
 Frame = +2

Query: 64   VTDRDMSLMKEV--ANVFPESYAMNCYFHVQAN-----VKQRCVL-DCKYPLGKKDGKEV 115
            + D D  L + V  +N F +S   NC  ++  +     +K+  +L  C Y +G K GKEV
Sbjct: 1148 IKDTDFKLQEYVGTSNEFIKSLKQNCSPNIVTDGNALPIKETLLLTSCNYEIGTKWGKEV 1327


>TC89654 weakly similar to PIR|T05644|T05644 hypothetical protein F20D10.290
           - Arabidopsis thaliana, partial (65%)
          Length = 1358

 Score = 25.8 bits (55), Expect = 6.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 2   DSTYKTNMYKMPMFEVVG 19
           D+TYKTN Y++P     G
Sbjct: 281 DTTYKTNQYRVPFASFTG 334


>TC90471 similar to PIR|T00588|T00588 hypothetical protein At2g30100
           [imported] - Arabidopsis thaliana, partial (3%)
          Length = 775

 Score = 25.4 bits (54), Expect = 8.5
 Identities = 13/43 (30%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
 Frame = -2

Query: 25  LTYSVGFGFETHEKEENF-VWVLKMLRKLLTSKMNMPKVIVTD 66
           + +SV   ++  EK  NF +WV ++  K+ T ++   KVI+ +
Sbjct: 264 IQFSVIIHYQLREKRLNFFIWVERIKVKIETKRI*RKKVIIAE 136


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,221,078
Number of Sequences: 36976
Number of extensions: 49452
Number of successful extensions: 257
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of query: 146
length of database: 9,014,727
effective HSP length: 87
effective length of query: 59
effective length of database: 5,797,815
effective search space: 342071085
effective search space used: 342071085
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)