BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144729.7 - phase: 0
(226 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC80027 similar to GP|15451020|gb|AAK96781.1 Unknown protein {Ar... 75 3e-14
TC82781 similar to PIR|F96767|F96767 proteinase IV F2P9.14 [impo... 50 7e-07
TC77564 similar to GP|20466754|gb|AAM20694.1 Isp4-like protein {... 47 6e-06
BG584300 similar to GP|6983868|dbj EST D25093(R3139) corresponds... 34 0.040
TC87427 similar to PIR|T08956|T08956 AIM1 protein - Arabidopsis ... 28 2.2
TC81144 similar to PIR|T04462|T04462 hypothetical protein F4D11.... 28 2.9
AW696480 weakly similar to SP|P03211|EBN1_ EBNA-1 nuclear protei... 28 2.9
TC89444 similar to GP|12619788|gb|AAG60543.1 cellulose synthase-... 27 8.3
TC88119 similar to GP|10178284|emb|CAC08342. rev interacting pro... 27 8.3
>TC80027 similar to GP|15451020|gb|AAK96781.1 Unknown protein {Arabidopsis
thaliana}, partial (30%)
Length = 926
Score = 74.7 bits (182), Expect = 3e-14
Identities = 33/39 (84%), Positives = 34/39 (86%)
Frame = +1
Query: 188 MPVISYGFAGMPPATPTNFARWPFTRMIFNYFVFRFHKR 226
+PVISYGFAGMPPATPTN A W T MIFNYFVFRFHKR
Sbjct: 373 IPVISYGFAGMPPATPTNIASWLLTGMIFNYFVFRFHKR 489
>TC82781 similar to PIR|F96767|F96767 proteinase IV F2P9.14 [imported] -
Arabidopsis thaliana, partial (19%)
Length = 692
Score = 50.1 bits (118), Expect = 7e-07
Identities = 21/26 (80%), Positives = 25/26 (95%)
Frame = +2
Query: 161 LDKMKKVAHGRIWTGKDAASHGLVDA 186
+DKM++VA GR+WTGKDAASHGLVDA
Sbjct: 104 VDKMEEVAQGRVWTGKDAASHGLVDA 181
>TC77564 similar to GP|20466754|gb|AAM20694.1 Isp4-like protein {Arabidopsis
thaliana}, partial (37%)
Length = 1275
Score = 47.0 bits (110), Expect = 6e-06
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +1
Query: 188 MPVISYGFAGMPPATPTNFARWPFTRMIFNYFVFRFHKR 226
+PV+ A MPPATP N+ W F IFN+FVFR+ K+
Sbjct: 529 LPVLLGATAMMPPATPLNYNSWIFVGTIFNFFVFRYRKK 645
>BG584300 similar to GP|6983868|dbj EST D25093(R3139) corresponds to a region
of the predicted gene.~Similar to Arabidopsis thaliana,
partial (21%)
Length = 755
Score = 34.3 bits (77), Expect = 0.040
Identities = 13/38 (34%), Positives = 19/38 (49%)
Frame = +3
Query: 188 MPVISYGFAGMPPATPTNFARWPFTRMIFNYFVFRFHK 225
MPVI MPPATP N+ W + +R+++
Sbjct: 243 MPVILGALTEMPPATPVNYTSWVLVGFASGFVAYRYYR 356
>TC87427 similar to PIR|T08956|T08956 AIM1 protein - Arabidopsis thaliana,
partial (29%)
Length = 810
Score = 28.5 bits (62), Expect = 2.2
Identities = 14/29 (48%), Positives = 18/29 (61%)
Frame = +2
Query: 84 SKKPVIASMSDAATSAGYYMAMGAGAIVA 112
SKKPV+A++ A G +AMG A VA
Sbjct: 398 SKKPVVAAVEGLALGGGLELAMGCHARVA 484
>TC81144 similar to PIR|T04462|T04462 hypothetical protein F4D11.160 -
Arabidopsis thaliana, partial (13%)
Length = 1102
Score = 28.1 bits (61), Expect = 2.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 202 TPTNFARWPFTRMIFNYFVFRFHKR 226
+PT RWP T+ + + V R+H R
Sbjct: 435 SPTRKCRWPITQQVTGWHVSRWHAR 361
>AW696480 weakly similar to SP|P03211|EBN1_ EBNA-1 nuclear protein. [strain
B95-8 Human herpesvirus 4] {Epstein-barr virus},
partial (5%)
Length = 505
Score = 28.1 bits (61), Expect = 2.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 202 TPTNFARWPFTRMIFNYFVFRFHKR 226
+PT RWP T+ + + V R+H R
Sbjct: 117 SPTRKCRWPITQQVTGWHVSRWHAR 43
>TC89444 similar to GP|12619788|gb|AAG60543.1 cellulose synthase-like CSLD3
{Arabidopsis thaliana}, partial (24%)
Length = 966
Score = 26.6 bits (57), Expect = 8.3
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = -1
Query: 97 TSAGYYMAMGAGAIVAENLTLTGSIRGTVSQNFNLDNELPSFIPYDDAKVLDNVVRLRL 155
+S + M + A AIVA + GS+R + F ++ S +P++ A ++++ R+ L
Sbjct: 858 SSYQHEMTLIASAIVAASRRSRGSVRAPG*RPFLMEG*SASGLPWNSATLIESTKRVEL 682
>TC88119 similar to GP|10178284|emb|CAC08342. rev interacting protein
mis3-like {Arabidopsis thaliana}, partial (79%)
Length = 1369
Score = 26.6 bits (57), Expect = 8.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 80 RSLASKKPVIASMSDAATSAGYYMAMGAGAIVAENL 115
RSL P+I MS +S+ ++A GAG + +L
Sbjct: 590 RSLLRTNPLILMMSHCISSSSTFIACGAGTLRERSL 483
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,842,670
Number of Sequences: 36976
Number of extensions: 60555
Number of successful extensions: 281
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of query: 226
length of database: 9,014,727
effective HSP length: 93
effective length of query: 133
effective length of database: 5,575,959
effective search space: 741602547
effective search space used: 741602547
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC144729.7