TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144726.5 - phase: 0 /pseudo
         (293 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC77594 similar to PIR|T10672|T10672 aspartate--tRNA ligase homo...    31  0.65
TC90036                                                                30  0.84
AJ497662                                                               29  2.5
TC79665 similar to PIR|F86307|F86307 hypothetical protein AAD500...    28  5.5

>TC77594 similar to PIR|T10672|T10672 aspartate--tRNA ligase homolog F6E21.100
            - Arabidopsis thaliana, partial (73%)
          Length = 2043

 Score = 30.8 bits (68), Expect = 0.65
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = +1

Query: 95   DITMNSKKVIFQVHRMSKYNK------DEVLEKAEKDLAAVTNQHVSRLVKELQGTDFWK 148
            D+ M  KK  F+V  M   +K      D +  K +KDL AV NQ+    +K L  T    
Sbjct: 1075 DVEMEIKKHYFEV--MDVVDKLFVAMFDTLNTKCKKDLEAVANQYPFEPLKYLPNT---- 1236

Query: 149  LRRAYSPGIQ 158
            LR  Y  GIQ
Sbjct: 1237 LRLTYEEGIQ 1266


>TC90036 
          Length = 627

 Score = 30.4 bits (67), Expect = 0.84
 Identities = 16/49 (32%), Positives = 28/49 (56%)
 Frame = -3

Query: 44  FQNTSKRPKTMSIATDTATVTDSAMKEPFTKYTEYLNNLNDKRERVVKA 92
           F N SK+P+  +I+T  A V+ +      T  +++ +NLN  R R++ A
Sbjct: 442 FINHSKKPEDSTISTMVAAVSKTLEGSKVTLISKFADNLNISRFRILLA 296


>AJ497662 
          Length = 629

 Score = 28.9 bits (63), Expect = 2.5
 Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 30/160 (18%)
 Frame = +2

Query: 157 IQEYVEAATFCSFCKNGTLLKLDEINKTLLPLSDPSLQPLQINILDYILGLADLTGE--- 213
           +QE  + AT  SFC      K     K L+ L+  ++  L+ N+ + I  +  L  +   
Sbjct: 83  VQEICKKATNPSFCSTILESKPGGAGKDLVSLASYTIDVLRTNVSNTISLITKLAAQSGS 262

Query: 214 -----------LMRLAIGRISDGELEFAEKIC--SFARDIYRELTLVVPHMDD--SSDMK 258
                      L R  +   + GE+E A+K+   S    +   +T V+  +D+  S D  
Sbjct: 263 DSLKQNRYKNCLSRFGMDDGALGEVEEAQKVLKDSDYNGVNMHITSVMTAVDECLSKDSS 442

Query: 259 TKMETML------------QSVMKIENVFMSEDQSIYHFW 286
              +T L            Q ++ I NV ++ D + ++ W
Sbjct: 443 PDNDTSLLPKDVECVNQIAQIILIISNVLLN*DITSFNLW 562


>TC79665 similar to PIR|F86307|F86307 hypothetical protein AAD50017.1
           [imported] - Arabidopsis thaliana, partial (78%)
          Length = 1402

 Score = 27.7 bits (60), Expect = 5.5
 Identities = 15/43 (34%), Positives = 23/43 (52%)
 Frame = -2

Query: 150 RRAYSPGIQEYVEAATFCSFCKNGTLLKLDEINKTLLPLSDPS 192
           R  +SPGI+ Y   +T CS C     L +++I    L  ++PS
Sbjct: 660 RCIHSPGIKYYWHTSTLCSLCH----LNINKIRDLPLQQNNPS 544


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.133    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,565,541
Number of Sequences: 36976
Number of extensions: 84303
Number of successful extensions: 469
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of query: 293
length of database: 9,014,727
effective HSP length: 95
effective length of query: 198
effective length of database: 5,502,007
effective search space: 1089397386
effective search space used: 1089397386
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)