BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144726.1 + phase: 0
(240 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC84496 similar to GP|1483232|emb|CAA67969.1 MADS5 protein {Betu... 279 8e-76
TC82227 similar to GP|1483232|emb|CAA67969.1 MADS5 protein {Betu... 210 2e-67
AL387855 similar to GP|1483230|emb MADS4 protein {Betula pendula... 194 3e-50
TC86876 similar to GP|16973296|emb|CAC80857. C-type MADS box pro... 159 7e-40
TC78994 similar to SP|O64645|SOC1_ARATH SUPPRESSOR OF CONSTANS O... 150 6e-37
TC81292 homologue to PIR|T09700|T09700 MADS-box protein - alfalf... 145 1e-35
TC78724 similar to GP|4322475|gb|AAD16052.1| putative MADS box t... 145 1e-35
TC82622 similar to GP|21739238|emb|CAD40993. OSJNBa0072F16.17 {O... 94 3e-32
BE124909 similar to GP|4322475|gb| putative MADS box transcripti... 96 3e-32
TC93057 homologue to GP|23194453|gb|AAN15183.1 MADS box protein ... 132 1e-31
TC87621 similar to SP|Q9FVC1|SVP_ARATH SHORT VEGETATIVE PHASE pr... 97 5e-27
TC90653 similar to GP|10835358|gb|AAC13695.2 PTD protein {Populu... 111 2e-25
TC84438 homologue to GP|1483232|emb|CAA67969.1 MADS5 protein {Be... 108 1e-24
TC90799 similar to GP|7672991|gb|AAF66690.1| MADS-box transcript... 105 2e-23
AW688164 similar to GP|3114588|gb|A MADS box protein {Eucalyptus... 72 3e-23
BQ123807 similar to GP|13810202|em MADS2 protein {Cucumis sativu... 92 2e-19
BI272814 PIR|S71757|S71 MADS box protein DEFH200 - garden snapdr... 74 5e-14
BE321045 similar to PIR|T09700|T097 MADS-box protein - alfalfa (... 69 2e-12
TC92737 weakly similar to GP|15022157|gb|AAK77938.1 MADS box pro... 50 1e-06
TC82470 homologue to GP|23497460|gb|AAN37003.1 hypothetical prot... 37 0.005
>TC84496 similar to GP|1483232|emb|CAA67969.1 MADS5 protein {Betula
pendula}, partial (74%)
Length = 681
Score = 279 bits (713), Expect = 8e-76
Identities = 141/215 (65%), Positives = 174/215 (80%)
Frame = +2
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
MGRGRVQLK+IENKINRQVTFSKRR+GLLKKAHEISVLCDAEVALIVFS+KGKL+EY++D
Sbjct: 26 MGRGRVQLKKIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSNKGKLYEYSSD 205
Query: 61 SCMEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGSM 120
CMEKILERYERYSYAERQ VAND NW IE+ RLK +++++Q+N R++MGE+L +
Sbjct: 206 PCMEKILERYERYSYAERQHVANDQPQNENWIIEHARLKTRLEVIQKNQRNFMGEELDGL 385
Query: 121 SLKELQSLEQQLDTALKLIRTRRNQVMYESISELQKKEKVIQEQNNMLAKKIKEKEKIAA 180
S+KELQ LE QLD+ALK IR+R+NQ+MYESISEL KK+K +QE+N +L K+KEKEK A
Sbjct: 386 SMKELQHLEHQLDSALKQIRSRKNQLMYESISELSKKDKALQEKNKLLTTKMKEKEKALA 565
Query: 181 QQQAQWEHPNHHGVNPNYLLQQQLPTLNMGGNYRE 215
Q + Q E N + L+ Q L TLN+G + +
Sbjct: 566 QLEQQNEDMN---LASTVLVPQSLETLNIGSSLED 661
>TC82227 similar to GP|1483232|emb|CAA67969.1 MADS5 protein {Betula
pendula}, partial (68%)
Length = 681
Score = 210 bits (534), Expect(2) = 2e-67
Identities = 104/139 (74%), Positives = 121/139 (86%)
Frame = +1
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
MGRGRVQLKRIENKINRQVTFSKRR+GLLKKA EISVLCDAEVALI+FS KGKLFEY++D
Sbjct: 130 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAQEISVLCDAEVALIIFSTKGKLFEYSSD 309
Query: 61 SCMEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGSM 120
CMEKILERYER SY ERQLV ++ NW +E+ +LKA++++LQRN R++MGEDL +
Sbjct: 310 PCMEKILERYERCSYMERQLVTSEQSPNENWVLEHAKLKARMEVLQRNQRNFMGEDLDGL 489
Query: 121 SLKELQSLEQQLDTALKLI 139
LKELQSLEQQLD+ALK I
Sbjct: 490 GLKELQSLEQQLDSALKQI 546
Score = 62.8 bits (151), Expect(2) = 2e-67
Identities = 29/39 (74%), Positives = 34/39 (86%)
Frame = +2
Query: 139 IRTRRNQVMYESISELQKKEKVIQEQNNMLAKKIKEKEK 177
+ +R+NQVMYESISEL KK+K +QE NNML KKIKEKEK
Sbjct: 545 LXSRKNQVMYESISELHKKDKALQEHNNMLTKKIKEKEK 661
>AL387855 similar to GP|1483230|emb MADS4 protein {Betula pendula}, partial
(51%)
Length = 493
Score = 194 bits (493), Expect = 3e-50
Identities = 99/147 (67%), Positives = 122/147 (82%)
Frame = +2
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
MGRGRVQLKRIENK ++QVTF KRR GLLKKA+EISVLCDA+VALI+FS KGKLFEY++
Sbjct: 53 MGRGRVQLKRIENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSA 232
Query: 61 SCMEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGSM 120
ME ILERYER ++ E L +E+QGNW+ EY +L AK+ +L+RN R+++G DL +
Sbjct: 233 PSMEDILERYERQNHTE--LTGATNETQGNWSFEYMKLTAKVQVLERNLRNFVGNDLDPL 406
Query: 121 SLKELQSLEQQLDTALKLIRTRRNQVM 147
S+KELQSLEQQLDT+LK IRTR+NQVM
Sbjct: 407 SVKELQSLEQQLDTSLKRIRTRKNQVM 487
>TC86876 similar to GP|16973296|emb|CAC80857. C-type MADS box protein {Malus
x domestica}, partial (85%)
Length = 2050
Score = 159 bits (403), Expect = 7e-40
Identities = 89/206 (43%), Positives = 134/206 (64%)
Frame = +2
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
MGRG++++KRIEN NRQVTF KRR GLLKKA+E+SVLCDAEVAL+VFS +G+L+EYA +
Sbjct: 89 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANN 268
Query: 61 SCMEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGSM 120
S + +ERY++ A + + + E ++L+ +I +Q RH +GE LGS+
Sbjct: 269 S-VRATIERYKKACAASTNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSL 445
Query: 121 SLKELQSLEQQLDTALKLIRTRRNQVMYESISELQKKEKVIQEQNNMLAKKIKEKEKIAA 180
SLKEL++LE +L+ L +R+R+++ ++ + +QK+E +Q NN L KI E E+ A
Sbjct: 446 SLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHER--A 619
Query: 181 QQQAQWEHPNHHGVNPNYLLQQQLPT 206
QQQ H+ + + Q LP+
Sbjct: 620 QQQ------QHNLMPDQTMCDQSLPS 679
>TC78994 similar to SP|O64645|SOC1_ARATH SUPPRESSOR OF CONSTANS
OVEREXPRESSION 1 protein (Agamous-like MADS box protein
AGL20)., partial (83%)
Length = 946
Score = 150 bits (378), Expect = 6e-37
Identities = 83/172 (48%), Positives = 117/172 (67%), Gaps = 1/172 (0%)
Frame = +3
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
M RG+ Q+KRIEN +RQVTFSKRR GLLKKA E+SVLCDAEVALIVFS +G+L+E+A+
Sbjct: 54 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASS 233
Query: 61 SCMEKILERYERYSYAERQLVANDS-ESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGS 119
S +E I ERY ++ ++S E+ E + KIDLL+ + R +GE LGS
Sbjct: 234 SILETI-ERYRSHTRINNTPTTSESVENTQQLKEEAENMMKKIDLLETSKRKLLGEGLGS 410
Query: 120 MSLKELQSLEQQLDTALKLIRTRRNQVMYESISELQKKEKVIQEQNNMLAKK 171
S+ ELQ +EQQL+ ++ IR ++ +V E I +L++KEK + +N L++K
Sbjct: 411 CSIDELQKIEQQLEKSINKIRVKKTKVFREQIDQLKEKEKALVAENVRLSEK 566
>TC81292 homologue to PIR|T09700|T09700 MADS-box protein - alfalfa
(fragment), partial (91%)
Length = 800
Score = 145 bits (367), Expect = 1e-35
Identities = 72/172 (41%), Positives = 118/172 (67%)
Frame = +2
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
MGRG++Q++RI+N +RQVTFSKRR GLLKKA E+++LCDAEV +++FS KL+++A+
Sbjct: 71 MGRGKIQIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTAKLYDFAST 250
Query: 61 SCMEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGSM 120
S M +++RY + QL ++ SE + W E L+ ++ LQ ++R MGE+L +
Sbjct: 251 S-MRSVIDRYNKTKEEHNQLGSSTSEIK-FWQREAAMLRQQLHNLQESHRQIMGEELSGL 424
Query: 121 SLKELQSLEQQLDTALKLIRTRRNQVMYESISELQKKEKVIQEQNNMLAKKI 172
++KELQ LE QL+ +L+ +R ++ Q+ + I EL +K +I ++N L +K+
Sbjct: 425 TVKELQGLENQLEISLRGVRMKKEQLFMDEIQELNRKGDIIHQENVELYRKV 580
>TC78724 similar to GP|4322475|gb|AAD16052.1| putative MADS box
transcription factor ETL {Eucalyptus globulus subsp.
globulus}, partial (71%)
Length = 1089
Score = 145 bits (366), Expect = 1e-35
Identities = 87/192 (45%), Positives = 126/192 (65%), Gaps = 8/192 (4%)
Frame = +1
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
M RG+ Q+KRIEN+ NRQVTFSKRR GLLKKA E+SVLCDAEVALIVFS GKL+E+++
Sbjct: 226 MVRGKTQMKRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSS 405
Query: 61 SCMEKILERYERYSYAERQLVANDSESQGN------WTIEYTRLKAKIDLLQRNYRHYMG 114
S I + ERY ++LV + Q N I+ T+ K++ L+ + R +G
Sbjct: 406 S----ISKTVERYQGKVKELVLSTKGIQENTQHLKECDIDTTK---KLEHLELSKRKLLG 564
Query: 115 EDLGSMSLKELQSLEQQLDTALKLIRTRRNQVMYESISELQKKEKVIQEQNNMLAKK--I 172
E+LGS + ELQ +E QL+ +L IR R+NQ++ E I +L+ KE+++ E+N L K+ I
Sbjct: 565 EELGSCAFDELQQIENQLERSLSKIRARKNQLLKEQIEKLKDKERLLLEENKRLCKQCGI 744
Query: 173 KEKEKIAAQQQA 184
+ + + QQ++
Sbjct: 745 GQNDCLNKQQES 780
>TC82622 similar to GP|21739238|emb|CAD40993. OSJNBa0072F16.17 {Oryza
sativa}, partial (78%)
Length = 847
Score = 93.6 bits (231), Expect(2) = 3e-32
Identities = 49/100 (49%), Positives = 66/100 (66%)
Frame = +3
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
MGRG++ ++RI+N +RQVTFSKRR GL+KKA E+++LCDA+V L++FS GKL+EYA
Sbjct: 138 MGRGKIVIRRIDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYANT 317
Query: 61 SCMEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKA 100
S M+ ++ERY E Q V N W E KA
Sbjct: 318 S-MKSVIERYN--ICKEDQQVTNPESEVKFWQREAVHFKA 428
Score = 62.0 bits (149), Expect(2) = 3e-32
Identities = 32/100 (32%), Positives = 56/100 (56%)
Frame = +1
Query: 98 LKAKIDLLQRNYRHYMGEDLGSMSLKELQSLEQQLDTALKLIRTRRNQVMYESISELQKK 157
L+ ++ LQ N+R MGE L +S++ LQ LE QL+ +L+ +R ++ +++ + I EL +K
Sbjct: 421 LRQQLQSLQENHRQLMGEQLYGLSIRNLQDLESQLELSLQGVRMKKEKILTDEIQELNRK 600
Query: 158 EKVIQEQNNMLAKKIKEKEKIAAQQQAQWEHPNHHGVNPN 197
+I ++N L KK+ QQ+ H +G N
Sbjct: 601 GSIIHQENVELYKKVN-----LLQQENTQLHKKVYGTTDN 705
>BE124909 similar to GP|4322475|gb| putative MADS box transcription factor
ETL {Eucalyptus globulus subsp. globulus}, partial (60%)
Length = 608
Score = 95.5 bits (236), Expect(2) = 3e-32
Identities = 49/71 (69%), Positives = 60/71 (84%)
Frame = +1
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
M RG+ Q+KRIEN+ NRQVTFSKRR GLLKKA E+SVLCDAEVALIVFS GKL+E+++
Sbjct: 148 MVRGKTQMKRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSS 327
Query: 61 SCMEKILERYE 71
S + K +ERY+
Sbjct: 328 S-ISKTVERYQ 357
Score = 60.1 bits (144), Expect(2) = 3e-32
Identities = 27/63 (42%), Positives = 44/63 (68%)
Frame = +2
Query: 109 YRHYMGEDLGSMSLKELQSLEQQLDTALKLIRTRRNQVMYESISELQKKEKVIQEQNNML 168
+R +GE+LGS + ELQ +E QL+ +L IR R+NQ++ E I +L+ KE+++ E+N L
Sbjct: 407 HRKLLGEELGSCAFDELQQIENQLERSLSKIRARKNQLLKEQIEKLKDKERLLLEENKRL 586
Query: 169 AKK 171
K+
Sbjct: 587 CKQ 595
>TC93057 homologue to GP|23194453|gb|AAN15183.1 MADS box protein GHMADS-2
{Gossypium hirsutum}, partial (95%)
Length = 858
Score = 132 bits (332), Expect = 1e-31
Identities = 69/177 (38%), Positives = 114/177 (63%)
Frame = +3
Query: 2 GRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDS 61
G R++ K IEN NRQVTF KRR GLLKKA+E+SVLCDAEVALIVFS +G+L+EY+ ++
Sbjct: 33 GGERLR*KGIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNN 212
Query: 62 CMEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGSMS 121
+ ++RY++ + + E +L+ +I +LQ + RH MG+ L +++
Sbjct: 213 -IRSTIDRYKKACSDHSSTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLT 389
Query: 122 LKELQSLEQQLDTALKLIRTRRNQVMYESISELQKKEKVIQEQNNMLAKKIKEKEKI 178
+KEL+ LE +L+ + IR+++++++ I QK+E ++ +N L KI + E++
Sbjct: 390 VKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKINDVERL 560
>TC87621 similar to SP|Q9FVC1|SVP_ARATH SHORT VEGETATIVE PHASE protein.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (65%)
Length = 1322
Score = 97.4 bits (241), Expect(2) = 5e-27
Identities = 57/117 (48%), Positives = 73/117 (61%)
Frame = +2
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
M R ++Q+K+IEN RQVTFSKRR GL+KKA E+SVLCDA+VALI+FS GKLFEY+
Sbjct: 437 MAREKIQIKKIENSTARQVTFSKRRRGLIKKAEELSVLCDADVALIIFSSTGKLFEYSNL 616
Query: 61 SCMEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDL 117
S M +ILER+ +S +L E Q +RL ++ R GEDL
Sbjct: 617 S-MREILERHHLHSKNLAKLEEPSLELQLVENSNCSRLSKEVAQKSHQLRQMRGEDL 784
Score = 40.4 bits (93), Expect(2) = 5e-27
Identities = 22/54 (40%), Positives = 37/54 (67%), Gaps = 1/54 (1%)
Frame = +3
Query: 120 MSLKELQSLEQQLDTAL-KLIRTRRNQVMYESISELQKKEKVIQEQNNMLAKKI 172
+SL+ELQ LE+ L+ L ++I T+ ++M E I+ELQ K + + E+NN L + +
Sbjct: 792 LSLEELQQLEKSLEIGLGRVIETKGEKIMME-INELQTKGRQLMEENNRLKRHV 950
>TC90653 similar to GP|10835358|gb|AAC13695.2 PTD protein {Populus
balsamifera subsp. trichocarpa}, partial (59%)
Length = 845
Score = 111 bits (278), Expect = 2e-25
Identities = 65/178 (36%), Positives = 110/178 (61%), Gaps = 4/178 (2%)
Frame = +2
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
MGRG++++K IEN NRQVT+SKRR G+ KKAHE+SVLCDA+V+LI+FS K+ EY T
Sbjct: 44 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITP 223
Query: 61 S-CMEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGE---D 116
+KI+++Y++ + + L + E +LK L+R RH +GE +
Sbjct: 224 GLSTKKIIDQYQK-TLGDIDLWRSHYEKM---LENLKKLKDINHKLRRQIRHRIGEGGME 391
Query: 117 LGSMSLKELQSLEQQLDTALKLIRTRRNQVMYESISELQKKEKVIQEQNNMLAKKIKE 174
L +S ++L+SLE+ +++++ IR R+ V+ +KK + +++ N L ++++
Sbjct: 392 LDDLSFQQLRSLEEDMNSSIAKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEK 565
>TC84438 homologue to GP|1483232|emb|CAA67969.1 MADS5 protein {Betula
pendula}, partial (24%)
Length = 702
Score = 108 bits (271), Expect = 1e-24
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = +1
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
MGRGRVQLKRIENKINRQVTFSKRR+GLLKKA EISVLCDAEVALI+FS KGKLFEY++D
Sbjct: 223 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAQEISVLCDAEVALIIFSTKGKLFEYSSD 402
>TC90799 similar to GP|7672991|gb|AAF66690.1| MADS-box transcription factor
{Canavalia lineata}, partial (76%)
Length = 653
Score = 105 bits (262), Expect = 2e-23
Identities = 63/173 (36%), Positives = 103/173 (59%), Gaps = 1/173 (0%)
Frame = +2
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATD 60
M R ++++K+I+N RQVTFSKRR G+ KKA E+S+LCDAEV L++FS GKL+EYA+
Sbjct: 71 MARQKIKIKKIDNATARQVTFSKRRRGIFKKAEELSILCDAEVGLVIFSTTGKLYEYAS- 247
Query: 61 SCMEKILERYERYSYAERQL-VANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGS 119
S M+ I+ RY + S+ +L + + N E L ++ + R ED
Sbjct: 248 SNMKDIITRYGQQSHHITKLDKPLQVQVEKNMPAE---LNKEVADRTQQLRGMKSEDFEG 418
Query: 120 MSLKELQSLEQQLDTALKLIRTRRNQVMYESISELQKKEKVIQEQNNMLAKKI 172
++L+ LQ LE+ L++ LK + + + + I L+ KE +++ +N L +K+
Sbjct: 419 LNLEGLQQLEKSLESXLKRVIEMKEKKILNEIKALRMKEIMLEXENKHLKQKM 577
>AW688164 similar to GP|3114588|gb|A MADS box protein {Eucalyptus grandis},
partial (31%)
Length = 549
Score = 71.6 bits (174), Expect(2) = 3e-23
Identities = 35/41 (85%), Positives = 38/41 (92%)
Frame = +1
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDA 41
MGRGRV L+RIENKINRQVTFSKRR+GLLKKA E+ VLCDA
Sbjct: 7 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDA 129
Score = 53.5 bits (127), Expect(2) = 3e-23
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Frame = +2
Query: 42 EVALIVFSHKGKLFEYATDSCMEKILERYE--RYSYAERQLVANDSESQGNWTIEYTRLK 99
EVALI+FS +GKLF+Y++ + + KI+ERY RYS + +ESQ N +Y +LK
Sbjct: 131 EVALIIFSSRGKLFQYSSTTDINKIIERYRQCRYSKPQAGNSLGHNESQ-NLYQDYLKLK 307
Query: 100 AKIDLLQRNYR 110
AK + L R R
Sbjct: 308 AKYESLDRKQR 340
>BQ123807 similar to GP|13810202|em MADS2 protein {Cucumis sativus}, partial
(88%)
Length = 676
Score = 91.7 bits (226), Expect = 2e-19
Identities = 56/165 (33%), Positives = 90/165 (53%), Gaps = 9/165 (5%)
Frame = +3
Query: 63 MEKILERYERYSYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGSMSL 122
M K L RY++ SY ++ E + ++ EY +LKA+ + LQR R+ +GEDLG +
Sbjct: 9 MLKTLVRYQKCSYGAVEVNKPAKELESSYR-EYLKLKARFESLQRTQRNLLGEDLGPLGT 185
Query: 123 KELQSLEQQLDTALKLIRTRRNQVMYESISELQKKEKVIQEQNNMLAKKIKEKEKIAAQQ 182
K+L+ LE+QLD++LK +R+ + Q M + +++LQ KE ++ E N L+ K++E + Q
Sbjct: 186 KDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLSMKLEEININSRNQ 365
Query: 183 QAQ-WEHPNHHGVNPNYLLQQQL--------PTLNMGGNYREEAP 218
Q WE + N Q PTL +G +YR P
Sbjct: 366 YRQTWEAGDQSMAYGNQNAHSQSFFQPLECNPTLQIGTDYRYSPP 500
>BI272814 PIR|S71757|S71 MADS box protein DEFH200 - garden snapdragon,
partial (16%)
Length = 320
Score = 73.9 bits (180), Expect = 5e-14
Identities = 35/40 (87%), Positives = 39/40 (97%)
Frame = +1
Query: 1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCD 40
MGRGRV+LKRIENKINRQVTF+KRR GLLKKA+E+SVLCD
Sbjct: 199 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCD 318
>BE321045 similar to PIR|T09700|T097 MADS-box protein - alfalfa (fragment),
partial (38%)
Length = 423
Score = 68.6 bits (166), Expect = 2e-12
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Frame = +1
Query: 77 ERQLVANDSESQGNWTIEYTRLKAKIDLLQRNYRHYMGEDLGSMSLKELQSLEQQLDTAL 136
E Q V N W E L+ ++ LQ N+R MGE L +S++ LQ LE QL+ +L
Sbjct: 16 EDQQVTNPESEVKFWQREADILRQQLQSLQENHRQLMGEQLYGLSIRNLQDLESQLELSL 195
Query: 137 KLIRTRRNQVMYESISELQKKEKVIQEQNNMLAKKI---KEKEKIAAQQQAQWEHP---N 190
+ +R ++ +++ + I EL +K +I ++N L KK+ + E A + A + P
Sbjct: 196 QGVRMKKEKILTDEIQELNRKGSIIHQENVELYKKVYGTTDNEATATSKNAFVQFPYSVR 375
Query: 191 HHGVNPNYLLQQQL 204
G P L Q QL
Sbjct: 376 GGGEYPQTLFQLQL 417
>TC92737 weakly similar to GP|15022157|gb|AAK77938.1 MADS box protein-like
protein NGL9 {Medicago sativa}, partial (33%)
Length = 541
Score = 49.7 bits (117), Expect = 1e-06
Identities = 29/109 (26%), Positives = 57/109 (51%), Gaps = 2/109 (1%)
Frame = +3
Query: 97 RLKAKIDLLQRNYRHYMGEDLGSMSLKELQSLEQQLDTALKLIRTRRNQVMYESISELQK 156
R+K + D +Q + RH GED+ S++ KEL +LE+ L+ L +R ++ +V ++
Sbjct: 24 RIKKENDSMQIDLRHLKGEDITSLNYKELMALEESLENGLTGVRDKKMEVH----RMFKR 191
Query: 157 KEKVIQEQNNMLAKKIKEKEKI--AAQQQAQWEHPNHHGVNPNYLLQQQ 203
K+++++N L +++ + QW P+H + + LQ Q
Sbjct: 192 NGKILEDENKELNFLLQQHMALEGVGNMHGQWI*PHHEVHHKGFGLQMQ 338
>TC82470 homologue to GP|23497460|gb|AAN37003.1 hypothetical protein
{Plasmodium falciparum 3D7}, partial (8%)
Length = 1064
Score = 37.4 bits (85), Expect = 0.005
Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 11/144 (7%)
Frame = +2
Query: 51 KGKLFEYATDSCMEKILERYERYSYAERQLVANDSESQGNWT---IEYTRLKAKIDLLQR 107
K K E + ++ + + + ++L + + + +G +E + +++ L+
Sbjct: 440 KQKELESQVKELVNDLVSKQKHFESHIKELESKERQLEGRLKEHELEEKEFEGRMNELES 619
Query: 108 NYRHYMGE--DLGSM------SLKELQSLEQQLDTALKLIRTRRNQVMYESISELQKKEK 159
RH+ E ++ + +KEL S E+QL+ +K + +++NQ I EL+ KEK
Sbjct: 620 KERHFKSEVEEINAKLMPLKGQIKELASKEKQLNGQVKELESKKNQ-FENRIKELESKEK 796
Query: 160 VIQEQNNMLAKKIKEKEKIAAQQQ 183
+ + A K +E E +QQ
Sbjct: 797 QHEGRVKEHASKEREFESQVMEQQ 868
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,288,245
Number of Sequences: 36976
Number of extensions: 71596
Number of successful extensions: 454
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of query: 240
length of database: 9,014,727
effective HSP length: 93
effective length of query: 147
effective length of database: 5,575,959
effective search space: 819665973
effective search space used: 819665973
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC144726.1