BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144724.6 + phase: 0
(1523 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 207 1e-72
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 200 3e-51
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 171 2e-42
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 170 4e-42
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 157 4e-38
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 149 8e-36
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 140 3e-33
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 114 3e-25
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 74 7e-19
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 87 4e-17
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 83 7e-16
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 82 2e-15
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 79 1e-14
BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 72 1e-12
BG453335 weakly similar to GP|18071369|g putative gag-pol polypr... 70 5e-12
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 70 8e-12
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 68 3e-11
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 67 4e-11
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 66 9e-11
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 65 2e-10
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 207 bits (528), Expect(2) = 1e-72
Identities = 99/141 (70%), Positives = 117/141 (82%)
Frame = -2
Query: 1071 VVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNG 1130
+ RNK++LV QGYNQ+EGIDYDE F+PVAR+EAIRIL+A+AA KL+QMDVKSAF+NG
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 1131 FLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDT 1190
L EEV+V QPPGF + E PNHVF+L K LYGLKQAPRAWY+RLS FL++NGF RGKID
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 1191 TLFRKTHNTDLLIVQVYVDDI 1211
TLF +LLI+QVYVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
Score = 85.9 bits (211), Expect(2) = 1e-72
Identities = 38/60 (63%), Positives = 48/60 (79%)
Frame = -3
Query: 1007 AMISQMEPKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLD 1066
A IS +EPK++ EA+ D WI +M+EEL QFER+KVW LVP + KT+IGTRWVFRNKL+
Sbjct: 606 AFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRNKLE 427
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 200 bits (509), Expect = 3e-51
Identities = 96/219 (43%), Positives = 142/219 (64%), Gaps = 3/219 (1%)
Frame = +1
Query: 1246 LQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGM 1305
+++ Q+ GI+I Q KYV D+L+++ M ++ + P+ P L KDE+G + +Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1306 IGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFD 1365
+G L+YL A+RPD+++ + L +RF C E H+ AVKR+ RYL GT +LG+ Y++ S
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1366 LVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQI 1425
L AY D+DYAGD +RKSTSG L + WS +KQ + LSTT+AE+++AA C Q
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1426 LWVRNQLEDYSLRYT---SVPIYCDNTSAINLSKNPIQH 1461
+W+R LE L YT S+ +YCDN S I LSKNP+ H
Sbjct: 541 VWMRRVLE--KLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 171 bits (433), Expect = 2e-42
Identities = 93/260 (35%), Positives = 150/260 (56%), Gaps = 7/260 (2%)
Frame = +3
Query: 1005 NMAMISQM-EPKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRN 1063
N+ M++ +P + EA+ + W +M E+ ERN W L IG +W+F+
Sbjct: 12 NLGMLTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKT 191
Query: 1064 KLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAA---HKSIKLFQ 1120
KL+E G++ + KARLVA+GY+QQ G+DY E FAPVAR + IR+++A AA + +
Sbjct: 192 KLNENGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS* 371
Query: 1121 MDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVF--KLTKALYGLKQAPRAWYDRLSTFL 1178
M + + + + + ++ ++ V ++ +ALYGLKQAPRAWY R+ +
Sbjct: 372 M*KAHSCMEN*MRKFLLIN------HRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYF 533
Query: 1179 IENGFSRGKIDTTLFRK-THNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMM 1237
+ GF + + TLF K + +LI+ +YVDD+IF M EEF M+ EF MS +
Sbjct: 534 TKEGFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDL 713
Query: 1238 GELGFFLGLQIKQHSNGIFI 1257
G++ +FLG+++ Q+ GI+I
Sbjct: 714 GKMHYFLGVEVTQNEKGIYI 773
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 170 bits (430), Expect = 4e-42
Identities = 89/195 (45%), Positives = 125/195 (63%)
Frame = +1
Query: 1018 NEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKAR 1077
N + D W++AMK E NK W+LVP K IG +WV+R K + +G V + KAR
Sbjct: 73 NLPLSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKAR 252
Query: 1078 LVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVY 1137
LVA+G++Q G DY ETF+PV + IR++L A ++ Q+D+ +AFLNGFL EEVY
Sbjct: 253 LVAKGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVY 432
Query: 1138 VSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTH 1197
+SQP GF K + V KL K+LYGLKQAPRAWY+ L++ I+ GF++ + D +L
Sbjct: 433 MSQPQGFEAANK-SLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQ 609
Query: 1198 NTDLLIVQVYVDDII 1212
N + + +YVDDI+
Sbjct: 610 NGACIYLXIYVDDIL 654
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 157 bits (396), Expect = 4e-38
Identities = 81/183 (44%), Positives = 113/183 (61%)
Frame = -1
Query: 1014 PKSINEAIIDDSWIKAMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVR 1073
P+S EA+ D W +++ E +N W + K + +RW+F K +G + R
Sbjct: 558 PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379
Query: 1074 NKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLN 1133
K RLVA+G+ G DY ETFAPVA+L IRI+L+ A + L+QMDVK+AFL G L
Sbjct: 378 KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199
Query: 1134 EEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLF 1193
+EVY+ PPG + K +V +L KA+YGLKQ+PRAWY++LST L GF + ++D TLF
Sbjct: 198 DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19
Query: 1194 RKT 1196
T
Sbjct: 18 TLT 10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 149 bits (376), Expect = 8e-36
Identities = 84/240 (35%), Positives = 128/240 (53%)
Frame = +2
Query: 1153 VFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDII 1212
V +L K++YGLKQA R WY +LS LI G+ + D +LF K ++ + VYVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1213 FGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKM 1272
I + + F++ +G L +FLGL++ + GI ++Q KY ++L+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1273 NEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTC 1332
K TP S L +S E +YR +IG L+YLT +RPDI FAV ++F +
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1333 AKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLG 1392
++ H A R+ +YL GL+Y S+ L ++ D+D+A RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 140 bits (354), Expect = 3e-33
Identities = 72/148 (48%), Positives = 98/148 (65%), Gaps = 1/148 (0%)
Frame = +2
Query: 1372 ADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQ 1431
+D+AGD RKSTSG LG I WS +KQ +A ST EAEY+++ SC +Q +W+R
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1432 LED-YSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDT 1490
LE + + T IYCDN SAI LSKNP+ H RSKHI+I+ H IR+ + +K + + + T
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1491 ENQLADIFTKPLVEDRFNFLKEKLLIMK 1518
E ++ADIFTKPL + F LK+ L +MK
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGMMK 445
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 114 bits (285), Expect = 3e-25
Identities = 59/163 (36%), Positives = 93/163 (56%), Gaps = 2/163 (1%)
Frame = +1
Query: 1340 AVKRIFRYLVGTTDLGLWYRKGSSFD--LVAYCDADYAGDKVERKSTSGSCQFLGQALIG 1397
A+K + +YL + L Y K + + L Y DADYAG+ RKS SG L I
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1398 WSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKN 1457
W +Q+ + LSTT+AEY++ +W++ + + + V I+CD+ SAI+L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 1458 PIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTK 1500
+ H R+KHI+I+ HFIRD ++ K I + + +E AD+FTK
Sbjct: 364 QVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 74.3 bits (181), Expect(2) = 7e-19
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +1
Query: 1165 QAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNT-DLLIVQVYVDDIIFGATKIKMCEE 1223
Q+PR W+DR + + + G+ + + D +F K +T I+ VYVDDI K +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 1224 FSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYVKDILKKYKMNEAKIMSTP 1281
NL+ EFE+ +G L +FLG+++ + G ISQ KYV D+LK+ +M K + P
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Score = 39.3 bits (90), Expect(2) = 7e-19
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +2
Query: 1274 EAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARF 1329
+ K TPM + L ++G + + Y+ ++G L+YL+ +RPDI F V ++F
Sbjct: 332 DVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 87.4 bits (215), Expect = 4e-17
Identities = 43/83 (51%), Positives = 61/83 (72%), Gaps = 1/83 (1%)
Frame = +2
Query: 1055 IGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHK 1114
IG RW+++ K +E+G +++ KARLVA+GY +Q+GID+DE FAPV R+E I +LLA AA
Sbjct: 95 IGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRIETI*LLLALAATN 274
Query: 1115 SIKLFQMDVKSAFLNG-FLNEEV 1136
+ +DVK AFLNG F+ E+
Sbjct: 275 GC*IHHIDVKIAFLNGHFVGTEI 343
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 83.2 bits (204), Expect = 7e-16
Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 3/122 (2%)
Frame = +1
Query: 1316 RPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSS---FDLVAYCDA 1372
RPDI ++V + ++F ++ HL A RI RY+ GT + GL + G+ ++L+ Y D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1373 DYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEAEYVSAASCCSQILWVRNQL 1432
D+ GD R+STSG A I W +KQ ALS+ EAEY++ Q LW+ + +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1433 ED 1434
++
Sbjct: 472 KE 477
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 82.0 bits (201), Expect = 2e-15
Identities = 57/189 (30%), Positives = 96/189 (50%), Gaps = 5/189 (2%)
Frame = -3
Query: 686 SNKLFFSGSRRKNLYVLE-LNDMPAESCFM----SLEKDKWIWHKRAGHISMKTIAKLSQ 740
S++L G + +LY+LE L+ + C SL KD +WH R GH + + +
Sbjct: 704 SSQLIGEGVTKGDLYMLEKLDPVSNYKCSFTSSSSLNKDA-LWHARLGHPHGRALNLM-- 534
Query: 741 LDLVRGLPKISFEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTASLT 800
LP + FE ++ CEAC+ GK K+ F + + +L++ DL+ + S
Sbjct: 533 ------LPGVVFE-NKNCEACILGKHCKNVFPRTSTVY-ENCFDLIYTDLW-TAPSLSRD 381
Query: 801 GKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENA 860
+Y +D+ S++TW+ + KD +AF+NF V N I +RSD+GGE+ +
Sbjct: 380 NHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSY 201
Query: 861 SFKTFFDEN 869
+FK+ D +
Sbjct: 200 AFKSHLDHH 174
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 79.0 bits (193), Expect = 1e-14
Identities = 33/118 (27%), Positives = 68/118 (56%), Gaps = 9/118 (7%)
Frame = +3
Query: 1399 SCRKQNTIALSTTEA---------EYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNT 1449
+CR+ + + + T + S C + +W++ +E+ + + +YCD+
Sbjct: 147 ACRRSSKLVVQVTNGCSSVNDRSGVHGSLPQACKEAIWMQRLMEELGHKQEQITVYCDSQ 326
Query: 1450 SAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVEDRF 1507
SA+++++NP HSR+KHI I++HF+R+ V++ ++ + + T + LAD TK + D+F
Sbjct: 327 SALHIARNPAFHSRTKHIGIQYHFVREVVEEGSVDMQKIHTNDNLADAMTKSINTDKF 500
Score = 65.9 bits (159), Expect = 1e-10
Identities = 34/78 (43%), Positives = 49/78 (62%)
Frame = +1
Query: 1341 VKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSC 1400
VKRI RY+ GT+ + + + GS + Y D+D+AGD +RKST+G L + W
Sbjct: 1 VKRIMRYIKGTSGVAVCFG-GSELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1401 RKQNTIALSTTEAEYVSA 1418
+ Q +ALSTTEAEY++A
Sbjct: 178 KLQTVVALSTTEAEYMAA 231
>BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (24%)
Length = 615
Score = 72.4 bits (176), Expect = 1e-12
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Frame = +1
Query: 17 PLFDGSNYYFWKGKMELFLRSQDNDMW-AVITNGDFVPTNKEGAVKAKSAWSTDEKAQVL 75
P+FDG NY+ W ++E +L + ND+W AV + + +P + + A + K +
Sbjct: 178 PVFDGENYHIWAARIEAYLEA--NDLWEAVEEDYEVLPLSDNPTM----AQIKNHKERKT 339
Query: 76 LNSKARLFLSCALTMEESERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFEVFE 135
SKAR L A++ E R+ +A +W+ LK +EG ++ + +R+FE+ +
Sbjct: 340 RKSKARATLFAAVSEEIFTRIMTIKSAFEIWNFLKTEYEGDERIRGMQALNLIREFEMQK 519
Query: 136 MSENETIDEMYARFTTIVNEMRSLG 160
M E+ETI E + +I N++R LG
Sbjct: 520 MKESETIKEYANKLISIANKVRLLG 594
>BG453335 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (11%)
Length = 660
Score = 70.5 bits (171), Expect = 5e-12
Identities = 32/119 (26%), Positives = 73/119 (60%)
Frame = +1
Query: 94 ERVDECTNAKGVWDTLKIHHEGTSHVKETRIDIGVRKFEVFEMSENETIDEMYARFTTIV 153
+R+ + T +K + L+ +HEG V++ ++ RKF++ +M + + I + ++ +V
Sbjct: 181 KRISKSTRSKEASNILEKYHEGDDKVEQIKLQSLRRKFKLMQMEDEKKIADYISKLINVV 360
Query: 154 NEMRSLGKAYSTHDRIRKILRCLPSMWRPMVTAITQAKDLKSMNLEDLIGSLRAHEVVL 212
N++++ G+ + + KI+R L + +V AI ++KD+K++ +E+L SL AH++++
Sbjct: 361 NQIKAYGEVVTDQQIVEKIMRTLSPRFDFIVVAIHESKDVKTLKIEELKSSLEAHKLMV 537
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 69.7 bits (169), Expect = 8e-12
Identities = 44/140 (31%), Positives = 73/140 (51%)
Frame = +1
Query: 746 GLPKISFEKDRICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFGPVQTASLTGKRYG 805
G+ K+ F K + G + K SF T T+ L+ +H DL+GP + S G+RY
Sbjct: 1 GIDKLEFCKHLL----FFGNRKKVSFSTATH-RTKGILDYIHSDLWGPSKVTSYGGRRYM 165
Query: 806 FVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTF 865
I+DDF R WV FL++K+E+F F+ + V+ + G N+ + +D+ EF ++ F F
Sbjct: 166 MTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEF 345
Query: 866 FDENVFGCYCYILNNKEKLG 885
+ + I N ++ G
Sbjct: 346 CTNHGIARHKTIPRNPQQNG 405
Score = 43.5 bits (101), Expect = 6e-04
Identities = 23/59 (38%), Positives = 37/59 (61%), Gaps = 2/59 (3%)
Frame = +1
Query: 870 VFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVY--NLKTQTVEISMHIIFDE 926
+FGC Y L N GK P++ + IFL Y++ SKGYR++ + K+Q + +S + F+E
Sbjct: 610 IFGCPAYALVND---GKLAPRAGECIFLSYASESKGYRLWCSDPKSQKLILSRDVTFNE 777
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 67.8 bits (164), Expect = 3e-11
Identities = 36/104 (34%), Positives = 55/104 (52%)
Frame = -3
Query: 1310 LYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAY 1369
+ LT P+I F++ L +R+ + H +K I +YL G D+GL+Y K S DL+ Y
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1370 CDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIALSTTEA 1413
+A Y D + +S +G G +I W K +TIA S+ A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 67.4 bits (163), Expect = 4e-11
Identities = 33/69 (47%), Positives = 43/69 (61%)
Frame = +2
Query: 1446 CDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVED 1505
CD SA L+ NP+ HSR KHI I HF+RD VQ+ + + V T +QLAD TKPL +
Sbjct: 29 CDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLSKS 208
Query: 1506 RFNFLKEKL 1514
R L+ K+
Sbjct: 209 RHQLLRNKI 235
>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (18%)
Length = 567
Score = 66.2 bits (160), Expect = 9e-11
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 6/146 (4%)
Frame = +3
Query: 567 NKSDHKRQNVTFRKDLLEELTF--KDPTLHGL-DSGCSRHMTGDRDCFLTFEKKDGGLVT 623
+K+ HK ++ LL TF K P+ + L DSGC+ HMT DRD F K V
Sbjct: 18 HKNKHKPHQ*GSKEQLLAMSTFATKQPSKYWLIDSGCTHHMTHDRDLFKELNKSTISKVR 197
Query: 624 FGNNDKGKIRGKGTI---GNLNSARIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICE 680
N ++ G GT+ + +I NV Y L +LLS+ QL G++V+F+ C
Sbjct: 198 MLNGAHIEVEGIGTVLVKSHSGYKQISNVLYAPKLNQSLLSVPQLLTKGYKVLFEHEKCV 377
Query: 681 VRQTSSNKLFFSGSRRKNLYVLELND 706
++ +NK + +VL+L +
Sbjct: 378 IKD-QNNKEVLRAQMKARKFVLDLKN 452
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 65.1 bits (157), Expect = 2e-10
Identities = 40/96 (41%), Positives = 55/96 (56%)
Frame = -2
Query: 1095 FAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVF 1154
F P+ +L I LL+ A +++ L +DVK+AFL G L E++Y+ QP GF + E V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGF-S*EVGKMVG 378
Query: 1155 KLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDT 1190
KL K++YGLKQ PR L GF R +I T
Sbjct: 377 KLKKSMYGLKQGPRQCI*SLKALCTRKGF-RSEIST 273
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,848,319
Number of Sequences: 36976
Number of extensions: 604868
Number of successful extensions: 3412
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 3288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3392
length of query: 1523
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1414
effective length of database: 4,984,343
effective search space: 7047861002
effective search space used: 7047861002
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC144724.6