BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144722.10 + phase: 0 /pseudo
(1595 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ... 50 9e-06
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 41 0.004
CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabi... 40 0.007
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 39 0.012
TC83616 similar to GP|16226661|gb|AAL16226.1 At2g28910/F8N16.20 ... 39 0.016
TC80683 homologue to GP|8777424|dbj|BAA97014.1 gb|AAF56406.1~gen... 38 0.028
TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finge... 37 0.047
TC84935 similar to PIR|G96631|G96631 probable RNA-binding protei... 37 0.080
TC77925 similar to GP|18700163|gb|AAL77693.1 AT4g02720/T10P11_1 ... 35 0.18
TC83119 similar to GP|13357253|gb|AAK20050.1 putative zinc finge... 35 0.30
TC88313 weakly similar to PIR|E84776|E84776 hypothetical protein... 33 0.68
TC89153 similar to GP|18855061|gb|AAL79753.1 putative RNA helica... 33 0.68
AW685995 similar to PIR|I51618|I516 nucleolar phosphoprotein - A... 33 0.89
TC76916 MtN4 33 0.89
BF644693 homologue to GP|2598599|emb MtN4 {Medicago truncatula},... 33 0.89
TC78386 similar to SP|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprote... 33 0.89
TC82422 similar to GP|15983392|gb|AAL11564.1 At1g59990/T2K10_4 {... 33 1.2
TC91508 weakly similar to SP|P52162|MAX_CHICK MAX protein. [Chic... 32 2.0
TC85722 similar to SP|P08283|H1_PEA Histone H1. [Garden pea] {Pi... 32 2.0
TC91570 weakly similar to GP|7208782|emb|CAB76913.1 hypothetical... 32 2.0
>TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (61%)
Length = 1288
Score = 49.7 bits (117), Expect = 9e-06
Identities = 62/247 (25%), Positives = 99/247 (39%), Gaps = 15/247 (6%)
Frame = +3
Query: 29 LQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVE-DLVSSLKVHEMSLNE 87
L+++KK +S+ S+ P P + AK N + + S + S ++
Sbjct: 267 LKVVKKEESSSEESSESEDEQPVVKAPAPSKKTPAKKGNVKKAQPETTSEESDSDSSSSD 446
Query: 88 HETSKKSKSIALPSKGKISKSSKAYKASESEEESPDGDSDEDQSVKMAMLSNKLEYLARK 147
E KK S A+PSK + S+ A K SEEE + SDED+ + +K +
Sbjct: 447 EEEVKKPVSKAVPSK---NGSAPAKKVDTSEEEDSEESSDEDKKPAAKAVPSKNG--SAP 611
Query: 148 QKKFLSKRGSYKNSKNEDQK-------------GCFNCKKPGHFIADCPDLQKEKFKGKS 194
KK S S +ED++ G KK + D E +
Sbjct: 612 AKKAASDEEDTDESSDEDEEDEKPAAKAVPSKNGSVPAKKAD---TESSDEDSESSDEED 782
Query: 195 KKSSFNSSK-FRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAVGLVATVSSEAVSEAE 253
KK + +SK KK+ ++ E+ D ES + D+DAK A ++
Sbjct: 783 KKPAAKASKNVSAPTKKAASSSDEESDEES-----DEDEDAKPVSKPAAVAKKSKKDSSD 947
Query: 254 SDSEDEN 260
SD ED++
Sbjct: 948 SDDEDDD 968
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 40.8 bits (94), Expect = 0.004
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = -3
Query: 1194 KWMSKVPFLMVSLKKKCMLNNLLGLRILSILTMFINLRNHYMA*NKLPELGM 1245
KWM +V LM K++C+ +NLL L++ M + HYM *+KL E GM
Sbjct: 276 KWM*RVHLLMEISKRRCLSSNLLDLKMQRYQIMCSD*IRHYMV*SKLQEHGM 121
Score = 30.0 bits (66), Expect = 7.5
Identities = 24/62 (38%), Positives = 31/62 (49%)
Frame = -2
Query: 1086 *A*NC*RSSLR*WMDISYARRAKSISKE*CVGSGIHTLSEEHYWNKMGIQKQAE*TRRSN 1145
*A C*RS +D YARR S+ K+* + G T + WN +G KQA R+
Sbjct: 589 *AQEC*RSIA*CRLDQFYARRTPSV*KK*GMVPGSST*RQNSNWN*VGF*KQA*VITRNK 410
Query: 1146 QK 1147
K
Sbjct: 409 SK 404
>CB892913 similar to GP|1769897|emb lectin receptor kinase {Arabidopsis
thaliana}, partial (35%)
Length = 837
Score = 40.0 bits (92), Expect = 0.007
Identities = 24/56 (42%), Positives = 32/56 (56%)
Frame = +1
Query: 42 VSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSI 97
+ KILRSL ++ V IEE KDL T+++E L SL+ +E E KK K I
Sbjct: 559 MEKILRSLDPKFEHIVEKIEETKDLETMTIEKLQGSLQAYE------EKHKKKKDI 708
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 39.3 bits (90), Expect = 0.012
Identities = 33/92 (35%), Positives = 48/92 (51%)
Frame = +2
Query: 1154 LKATVNKKALITLKHLLQLQDWKQSGYFYPTQLIMA*YYIKWMSKVPFLMVSLKKKCMLN 1213
L+ +V +ITLK L + SG F P ++ + K +S +PF MV K+KC+
Sbjct: 260 LRVSVKHLDVITLKLSLL**NLSLSGSFSPLLSLINGKFNKLISTMPF*MVFFKRKCICL 439
Query: 1214 NLLGLRILSILTMFINLRNHYMA*NKLPELGM 1245
NL L++L I + NH MA*+K GM
Sbjct: 440 NLRDLKLL-INLWCAS*TNHSMA*SKHHVHGM 532
>TC83616 similar to GP|16226661|gb|AAL16226.1 At2g28910/F8N16.20
{Arabidopsis thaliana}, partial (30%)
Length = 854
Score = 38.9 bits (89), Expect = 0.016
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Frame = +2
Query: 102 KGKISKSSKAYKASESEEESPD---GDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSY 158
KGK K K SEEE D DS+ D ++ A++ R KK KRGSY
Sbjct: 530 KGKAEKVDKGSNVESSEEEEDDSESSDSEIDSEIERAIVK-------RSGKKVSEKRGSY 688
Query: 159 KNSKNEDQKGCFNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSK 203
+ + D +D +K K +G+ KK S + +
Sbjct: 689 RKKDDSDDDE-----------SDKDSDRKRKKRGREKKRSVKTXR 790
>TC80683 homologue to GP|8777424|dbj|BAA97014.1
gb|AAF56406.1~gene_id:K9P8.7~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (16%)
Length = 1360
Score = 38.1 bits (87), Expect = 0.028
Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Frame = +1
Query: 79 KVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESPDGDSDEDQSVKMAMLS 138
K+ ++S + H +K ++++ KIS+ K K + +E+ D D +E++S++M++L+
Sbjct: 808 KLKDISGDLH--AKDAENLKTGGGKKISRGQKG-KLKKMKEKYADQD-EEERSIRMSLLA 975
Query: 139 NKLEYLARKQKKFL---SKRGSYKNSKNEDQ-KGCFNCKKPGHFIADCPD 184
+ + + +++ + S +G +S D K C+ CKK GH DC +
Sbjct: 976 SSGKPIKKEETLPVIETSDKGKKSDSGPIDAPKICYKCKKVGHLSRDCKE 1125
>TC88387 similar to GP|13357253|gb|AAK20050.1 putative zinc finger protein
{Oryza sativa (japonica cultivar-group)}, partial (96%)
Length = 1286
Score = 37.4 bits (85), Expect = 0.047
Identities = 24/84 (28%), Positives = 42/84 (49%), Gaps = 1/84 (1%)
Frame = +1
Query: 103 GKISKSSKAYKA-SESEEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNS 161
GKI K S ++ S+S SP S V + S + + ++ S+RG +++
Sbjct: 244 GKILKMSSVSRSRSKSRSRSPMDRSRSRSPVDRRIRSERFSHREAPYRRD-SRRGFSQDN 420
Query: 162 KNEDQKGCFNCKKPGHFIADCPDL 185
C NCK+PGH++ +CP++
Sbjct: 421 L------CKNCKRPGHYVRECPNV 474
Score = 31.6 bits (70), Expect = 2.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 165 DQKGCFNCKKPGHFIADCPD 184
++K C NC+K GH DCP+
Sbjct: 718 NEKACNNCRKTGHLARDCPN 777
Score = 31.2 bits (69), Expect = 3.4
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 169 CFNCKKPGHFIADCPD 184
C+NCK+PGH + CP+
Sbjct: 538 CWNCKEPGHMASSCPN 585
>TC84935 similar to PIR|G96631|G96631 probable RNA-binding protein F8A5.17
[imported] - Arabidopsis thaliana, partial (41%)
Length = 552
Score = 36.6 bits (83), Expect = 0.080
Identities = 14/29 (48%), Positives = 16/29 (54%)
Frame = +2
Query: 155 RGSYKNSKNEDQKGCFNCKKPGHFIADCP 183
RGSY Q CF C +PGH+ DCP
Sbjct: 431 RGSYGAGDRVGQDDCFKCGRPGHWARDCP 517
>TC77925 similar to GP|18700163|gb|AAL77693.1 AT4g02720/T10P11_1
{Arabidopsis thaliana}, partial (47%)
Length = 1538
Score = 35.4 bits (80), Expect = 0.18
Identities = 47/223 (21%), Positives = 90/223 (40%)
Frame = +3
Query: 87 EHETSKKSKSIALPSKGKISKSSKAYKASESEEESPDGDSDEDQSVKMAMLSNKLEYLAR 146
+ E +K+KS + + K S S K +S ++S + DS+ + +++E R
Sbjct: 519 DKEIKQKAKSESESEESKESDSELRKKRRKSYKKSRESDSESESE-------SEVEDRKR 677
Query: 147 KQKKFLSKRGSYKNSKNEDQKGCFNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRK 206
++ + S+ S NS+ ED+K + + +KSS K +
Sbjct: 678 RKSRKYSESDSDTNSEEEDRK-----------------------RRRRRKSSRRRRKSSR 788
Query: 207 QIKKSLMATWEDLDSESGSDKEEADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYSKI 266
+ ++ + + D ESG D D K + S + SE S+ +E E+ S
Sbjct: 789 KKRRCSDSDESETDDESGYD----DSGRKRKRSKRSRKSKKKSSEPVSEGSEEIELGSD- 953
Query: 267 PRQELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKSTLLE 309
+ +E+ + E + E+ K +L + QK L+
Sbjct: 954 --SAVAKINEEIDDVDEEKMAEMNAEALKLKELFESQKKPALD 1076
>TC83119 similar to GP|13357253|gb|AAK20050.1 putative zinc finger protein
{Oryza sativa (japonica cultivar-group)}, partial (16%)
Length = 421
Score = 34.7 bits (78), Expect = 0.30
Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 8/45 (17%)
Frame = +3
Query: 149 KKFLSKRGSYKNS--KNEDQKG------CFNCKKPGHFIADCPDL 185
+K S R SY+++ + + +G C NCK+PGH+ +CP++
Sbjct: 264 RKIRSDRHSYRDAPYRRDSSRGFSRDNLCKNCKRPGHYARECPNV 398
>TC88313 weakly similar to PIR|E84776|E84776 hypothetical protein At2g36070
[imported] - Arabidopsis thaliana, partial (31%)
Length = 1201
Score = 33.5 bits (75), Expect = 0.68
Identities = 53/221 (23%), Positives = 93/221 (41%), Gaps = 21/221 (9%)
Frame = +2
Query: 266 IPRQELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKSTLLELKASEEELKGFNLIST 325
+P+Q+ V +++ +F +N++ D K + K K ELK EELKG +
Sbjct: 191 LPQQQGVKTIRRY-GVFNEFSNKVKDETVKNPEFQKSVK----ELKEKAEELKG---VKE 346
Query: 326 TYEDRLKSLCQKLQEKCD-----------KGSGNKHE--IALDDFIMAGIDRSKVASMIY 372
+++ K ++L ++ D K S N E A + + AGI + +
Sbjct: 347 GLKEKTKQTTEQLYKQFDGVWKEAEAAAKKVSHNVKEKISAATEEVKAGIGKQDSSGSTD 526
Query: 373 STYK-----NKGKGIGYSEEKSKEYSLKSYCDCIKDGLKSTFVPEGTNAITAVQSKPEAS 427
S+ K +G+ EEK++E + + + + KSTF S P+ S
Sbjct: 527 SSTKQDADAKQGRQTSPEEEKNQESASGNASESLFGKFKSTF------------SSPKVS 670
Query: 428 GSQAKITSKPENLKIKVMTKSDPKSQKIKI---LKRSEPVH 465
S K+ ++ KI MTK K ++ + +PVH
Sbjct: 671 TSFQKL----KDAKIVDMTKKGYDILKEELSGNTPKRQPVH 781
>TC89153 similar to GP|18855061|gb|AAL79753.1 putative RNA helicase {Oryza
sativa}, partial (3%)
Length = 737
Score = 33.5 bits (75), Expect = 0.68
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +3
Query: 153 SKRGSYKNSKNEDQKGCFNCKKPGHFIADCPD 184
S R S N + CF+C +PGH +DCP+
Sbjct: 99 SNRSSSPNRRGSYGGACFSCGQPGHRASDCPN 194
>AW685995 similar to PIR|I51618|I516 nucleolar phosphoprotein - African
clawed frog, partial (5%)
Length = 516
Score = 33.1 bits (74), Expect = 0.89
Identities = 33/138 (23%), Positives = 59/138 (41%), Gaps = 5/138 (3%)
Frame = +3
Query: 138 SNKLEYLARKQKKFLSKRGSYKNSKNEDQKGCFNCKK---PGHFIADCPDLQKEKFKGKS 194
S K++ K+ + + K K +K E++K KK P + E+
Sbjct: 39 SKKVKAEEPKKVEKVEKTKGKKAAKAEEEKKKQQKKKEEKPAPMEVEEDSSSSEESSSSE 218
Query: 195 KKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAVGLVATVSSE--AVSEA 252
++ + K+ ++ E+ S S S+ EE + AK A + S E + SE
Sbjct: 219 DEAPAKKAAPAKKAAAKKESSSEEESSSSESESEEEEKPAKKAAAKKESSSEEESSSSEE 398
Query: 253 ESDSEDENEVYSKIPRQE 270
ESD E++NE + ++E
Sbjct: 399 ESDEEEKNEARRR*EQEE 452
>TC76916 MtN4
Length = 1850
Score = 33.1 bits (74), Expect = 0.89
Identities = 15/45 (33%), Positives = 23/45 (50%), Gaps = 4/45 (8%)
Frame = -3
Query: 565 HDWRESFVPYPYNERWRRSEVWWQPNW---KDHW-YRYYW*FLHL 605
H+WR ++ + WR +WW+ NW W YRY W F ++
Sbjct: 984 HNWRCWYIRWW*WYNWR*RNMWWENNWWLRNIRWCYRYNWWFRNI 850
Score = 32.3 bits (72), Expect = 1.5
Identities = 12/31 (38%), Positives = 16/31 (50%), Gaps = 4/31 (12%)
Frame = -3
Query: 576 YNERWRRSEVWWQPNWKDH----WYRYYW*F 602
Y WR +WW+ NW H WY +W*+
Sbjct: 1038 YRHNWR*RNMWWKNNWWFHNWRCWYIRWW*W 946
>BF644693 homologue to GP|2598599|emb MtN4 {Medicago truncatula}, partial
(79%)
Length = 621
Score = 33.1 bits (74), Expect = 0.89
Identities = 15/45 (33%), Positives = 23/45 (50%), Gaps = 4/45 (8%)
Frame = -3
Query: 565 HDWRESFVPYPYNERWRRSEVWWQPNW---KDHW-YRYYW*FLHL 605
H+WR ++ + WR +WW+ NW W YRY W F ++
Sbjct: 211 HNWRCWYIRWW*WYNWR*RNMWWENNWWLRNIRWCYRYNWWFRNI 77
Score = 32.3 bits (72), Expect = 1.5
Identities = 12/31 (38%), Positives = 16/31 (50%), Gaps = 4/31 (12%)
Frame = -3
Query: 576 YNERWRRSEVWWQPNWKDH----WYRYYW*F 602
Y WR +WW+ NW H WY +W*+
Sbjct: 265 YRHNWR*RNMWWKNNWWFHNWRCWYIRWW*W 173
>TC78386 similar to SP|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein
precursor [Contains: Dentin phosphoprotein (Dentin
phosphophoryn) (DPP);, partial (2%)
Length = 726
Score = 33.1 bits (74), Expect = 0.89
Identities = 33/115 (28%), Positives = 49/115 (41%), Gaps = 10/115 (8%)
Frame = +3
Query: 63 AKDLNTLSVEDLVSSLKVHEMSLNEHETS---KKSKSIALPSKGKISKSSKAY---KASE 116
+ D + S L S + S +EHETS KK K P K K + SK++ +
Sbjct: 228 SSDSDFYSSSSLSDSSRSESSSNSEHETSHRSKKHKKSDKPKKNKEKERSKSHRHKRHKH 407
Query: 117 SEEESPDGD-SDEDQSVKMAMLSNKLEYLARKQ---KKFLSKRGSYKNSKNEDQK 167
S +E P+G+ S + + NK + + R KK L K K K + K
Sbjct: 408 SLKEKPNGERSSSPVQLSKFLGRNKDDGVRRSAVSGKKILLKLDKTKEDKEAESK 572
>TC82422 similar to GP|15983392|gb|AAL11564.1 At1g59990/T2K10_4 {Arabidopsis
thaliana}, partial (43%)
Length = 1093
Score = 32.7 bits (73), Expect = 1.2
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +3
Query: 78 LKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYKASESEEESPD---GDSDEDQSVKM 134
L+ E L+ +TS + L S S ++ ASE EEE P D ++D + +
Sbjct: 75 LRYDEKLLSRSKTSVSELPVTLES------SLSSHDASEGEEEFPTEAMSDEEDDDNEDI 236
Query: 135 AMLSNKLEYLARKQKKFLSKRGSYKNSK 162
A ++N+ E + + ++ + R ++ SK
Sbjct: 237 ANINNEAESVKKTRRDWRRVRKHFERSK 320
>TC91508 weakly similar to SP|P52162|MAX_CHICK MAX protein. [Chicken]
{Gallus gallus}, partial (16%)
Length = 1350
Score = 32.0 bits (71), Expect = 2.0
Identities = 37/163 (22%), Positives = 69/163 (41%), Gaps = 5/163 (3%)
Frame = +1
Query: 75 VSSLKVHEMSLNEHETSKKSKSIALPSKGKI----SKSSKAYKASESEEESPDGDS-DED 129
V SLK H++ +++ T + S S G + S +K S+S+ +G+ ++D
Sbjct: 46 VVSLK-HDLPQHQYITHEGGPSRGDNSYGNMLDNQSIRTKGTSVSDSKSRKSNGEKREDD 222
Query: 130 QSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKNEDQKGCFNCKKPGHFIADCPDLQKEK 189
+ VK ++ N+ +Y + +++ KR + + D + D D + +
Sbjct: 223 RKVKSPLVGNQ-DYSSSSEEERSRKRSRHHRHRRRDVGSDSSSD-------DEKDRRSSR 378
Query: 190 FKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADD 232
KG+ +KSS S K+ K D S S + DD
Sbjct: 379 SKGRREKSSREKSSGSKKHSKHKKHRKHDSPSRSSHYSMDRDD 507
>TC85722 similar to SP|P08283|H1_PEA Histone H1. [Garden pea] {Pisum
sativum}, partial (61%)
Length = 897
Score = 32.0 bits (71), Expect = 2.0
Identities = 40/146 (27%), Positives = 60/146 (40%), Gaps = 17/146 (11%)
Frame = +3
Query: 423 KPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQNLIKPESKI------- 475
K ASG K+ + K+ TK + K+K ++P + ++KP +K
Sbjct: 399 KNVASGKLVKVKG---SFKLSSATKP---AAKVKAKPAAKPKAKAVVKPRTKSVTAKPKA 560
Query: 476 ----PKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVQGRKSKTSK--INPKGP 529
PK K KAA KT K VKP + P G+K T+K K P
Sbjct: 561 AAAKPKSAATKPKAAVGKAKTAAK-VKPNAKVAKTTTRTSP---GKKVATAKPAAKKKTP 728
Query: 530 MKIWVPKSEL----AKNAGVLKGKRE 551
+K PK++ AK + +G R+
Sbjct: 729 VKNVKPKTKTVRSPAKKVAIKRGGRK 806
>TC91570 weakly similar to GP|7208782|emb|CAB76913.1 hypothetical protein
{Cicer arietinum}, partial (17%)
Length = 1446
Score = 32.0 bits (71), Expect = 2.0
Identities = 47/227 (20%), Positives = 85/227 (36%), Gaps = 16/227 (7%)
Frame = +2
Query: 54 RPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKISKSSKAYK 113
+PK + AKD +L + L + + SLN +KS P + K K+
Sbjct: 200 KPKKSLNGSAKDEKSLEQKTLEENNDKPKKSLNGSAKEEKSLGQKTPEENN-DKPKKSLN 376
Query: 114 ASESEEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKNEDQKGCFNCK 173
EE+ + E+ + K KK L+ G K K+ QK N
Sbjct: 377 GGVKEEKDLGQKTQEENN--------------DKPKKSLN--GGVKEEKDLGQKTQENND 508
Query: 174 KPGHFIADCPDLQK-------EKFKGKSKKSSFNSSKFRKQIKKSLM---------ATWE 217
KP ++ +K E+ GK KKS S+K K +++ + A +
Sbjct: 509 KPKKSLSGGAKEEKGLGQKAQEENNGKPKKSLNGSAKEEKGLRQKALEQEGHNDPNAVLQ 688
Query: 218 DLDSESGSDKEEADDDAKAAVGLVATVSSEAVSEAESDSEDENEVYS 264
+ G ++ +D +++ S + ++ ENE+++
Sbjct: 689 TSMKKVGDEEIGVSEDLNGGDKIISNNYQRRASLPANFNDQENEIHN 829
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.356 0.157 0.537
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,129,489
Number of Sequences: 36976
Number of extensions: 631643
Number of successful extensions: 8339
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 2856
Number of HSP's successfully gapped in prelim test: 528
Number of HSP's that attempted gapping in prelim test: 5104
Number of HSP's gapped (non-prelim): 3908
length of query: 1595
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1486
effective length of database: 4,984,343
effective search space: 7406733698
effective search space used: 7406733698
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC144722.10