BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144721.10 + phase: 0 /pseudo
(813 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 189 4e-48
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 146 3e-35
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 125 6e-29
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 103 3e-22
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 65 5e-22
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 101 1e-21
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 88 1e-17
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 80 4e-15
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 67 1e-13
BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F... 61 1e-13
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 72 9e-13
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 71 1e-12
BG587141 similar to PIR|H86461|H86 hypothetical protein AAF32440... 65 1e-10
AJ497569 weakly similar to PIR|T04833|T04 hypothetical protein F... 42 4e-09
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 54 2e-07
BF519055 similar to GP|21592754|gb| unknown {Arabidopsis thalian... 54 3e-07
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ... 53 4e-07
BG452576 weakly similar to GP|12005223|gb|A reverse transcriptas... 46 6e-07
CB894419 weakly similar to GP|10177935|db copia-type polyprotein... 52 9e-07
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 52 9e-07
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 189 bits (480), Expect = 4e-48
Identities = 96/240 (40%), Positives = 141/240 (58%)
Frame = +2
Query: 445 VCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILLYVDDII 504
VC L+KS+YGLKQA R WY + + L + G++ S +D SLF T +L+YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 505 LTTSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDIISRAKM 564
L + S + L F + DLG L YFLG+ R G+ L+Q KY +++ +
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 565 VNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQICLYMHD 624
+ K LTP D KL + ++D T YR L G L YLT TRPDIS+AVQQ+ ++
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 625 PRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTSGYCVYLG 684
P+ H+ A R+++Y++ GL S ++ LS+++D+DW CP TR+S +GY V+LG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 146 bits (369), Expect = 3e-35
Identities = 76/217 (35%), Positives = 117/217 (53%)
Frame = +1
Query: 538 VSATRHSGGLFLHQSKYAEDIISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSL 597
V ++ G+++ Q KY D++ R M + P+ + KL D+T Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 598 AGALQYLTFTRPDISYAVQQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTN 657
G L YL TRPD+ Y + I +M+ P H A+KR++RY+ GT G+ +
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 658 LSAYSDADWGGCPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAES 717
L AY+D+D+ G D R+STSGY L +SWS+K+Q ++ S+ +AE+ A +S
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 718 CWLRNLLLELHCPISKATVVYCDNVSAIYLSGNPVNH 754
W+R +L +L S + +YCDN S I LS NPV H
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 125 bits (314), Expect = 6e-29
Identities = 63/146 (43%), Positives = 91/146 (62%)
Frame = +2
Query: 664 ADWGGCPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNL 723
+DW G +TR+STSGY +LG ISWS+K+Q ++ S+AEAEY + ++ WLR +
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 724 LLELHCPISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPT 783
L +H + T +YCDN SAI LS NPV H R+KHI++ H +RE +A +V + + PT
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 784 RYQYADIFTKGLPKPLFDEFRSSLSI 809
+ ADIFTK L F + + L +
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGM 439
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 103 bits (256), Expect = 3e-22
Identities = 56/127 (44%), Positives = 73/127 (57%), Gaps = 3/127 (2%)
Frame = +1
Query: 608 RPDISYAVQQICLYMHDPRTSHFAALKRIIRYIQGTKEFGL---HLSPSTVTNLSAYSDA 664
RPDI Y+V I +MHDPR H A RI+RY++GT E+GL + + S V L YSD+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 665 DWGGCPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLL 724
DW G RRSTSGY D ISW K+Q + SS EAEY ++ WL +++
Sbjct: 301 DWCG---DRRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 725 LELHCPI 731
EL C +
Sbjct: 472 KELKCEV 492
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 65.5 bits (158), Expect(2) = 5e-22
Identities = 37/94 (39%), Positives = 52/94 (54%)
Frame = +3
Query: 716 ESCWLRNLLLELHCPISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQ 775
E+ W++ L+ EL + TV YCD+ SA++++ NP H RTKHI + HFVRE V G
Sbjct: 249 EAIWMQRLMEELGHKQEQITV-YCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGS 425
Query: 776 VHVLHVPTRYQYADIFTKGLPKPLFDEFRSSLSI 809
V + + T AD TK + F RSS +
Sbjct: 426 VDMQKIHTNDNLADAMTKSINTDKFIWCRSSYGL 527
Score = 57.8 bits (138), Expect(2) = 5e-22
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +1
Query: 633 LKRIIRYIQGTKEFGLHLSPSTVTNLSAYSDADWGGCPDTRRSTSGYCVYLGDNLISWSA 692
+KRI+RYI+GT + S +T + Y D+D+ G D R+ST+GY L +SW +
Sbjct: 1 VKRIMRYIKGTSGVAVCFGGSELT-VRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 693 KRQATLSRSSAEAEY 707
K Q ++ S+ EAEY
Sbjct: 178 KLQTVVALSTTEAEY 222
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 101 bits (252), Expect = 1e-21
Identities = 54/164 (32%), Positives = 95/164 (57%), Gaps = 2/164 (1%)
Frame = +1
Query: 632 ALKRIIRYIQGTKEFGLHLSPSTVTN--LSAYSDADWGGCPDTRRSTSGYCVYLGDNLIS 689
ALK +++Y+ + + L + + L Y DAD+ G DTR+S SG+ L IS
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 690 WSAKRQATLSRSSAEAEYRGVANVVAESCWLRNLLLELHCPISKATVVYCDNVSAIYLSG 749
W A +Q+ ++ S+ +AEY V ++ WL+ ++ EL + ++CD+ SAI+L+
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGI-TQEYVKIHCDSQSAIHLAN 360
Query: 750 NPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYADIFTK 793
+ V H+RTKHI++ +HF+R+ + ++ V + + AD+FTK
Sbjct: 361 HQVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 87.8 bits (216), Expect = 1e-17
Identities = 39/103 (37%), Positives = 67/103 (64%), Gaps = 1/103 (0%)
Frame = +3
Query: 448 LKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFIS-THGDDTTYILLYVDDIILT 506
+K++LYGLKQAPRAWY R ++ + GF +H+LF+ + G I LYVDD+I
Sbjct: 465 VKRALYGLKQAPRAWYSRIEAYFTKEGFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFI 644
Query: 507 TSSHSLRDTIIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFL 549
+ ++ + +++ EF+++DLG ++YFLGV T++ G+++
Sbjct: 645 GNDENMFEEFKKSMKKEFNMSDLGKMHYFLGVEVTQNEKGIYI 773
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 79.7 bits (195), Expect = 4e-15
Identities = 42/118 (35%), Positives = 59/118 (49%), Gaps = 1/118 (0%)
Frame = +1
Query: 457 QAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILL-YVDDIILTTSSHSLRDT 515
Q+PR W+ RF + G++ +TDH++FI IL+ YVDDI LT
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 516 IIAALRSEFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDIISRAKMVNCKPALTP 573
+ L EF + DLG L YFLG+ R G + Q KY D++ +M+ CK P
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Score = 43.1 bits (100), Expect = 4e-04
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +2
Query: 561 RAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFTRPDISYAVQQICL 620
R + ++ KP+ TP+D KL D Y+ L G L YL+ TRPDIS+ V +
Sbjct: 317 RQE*LDVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQ 496
Query: 621 YM 622
+M
Sbjct: 497 FM 502
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 67.4 bits (163), Expect(2) = 1e-13
Identities = 33/66 (50%), Positives = 42/66 (63%)
Frame = -2
Query: 438 DRNNPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYIL 497
D P+HV L K+LYGLKQAPRAWY+R + FL GF K D++LF+ + I
Sbjct: 199 DAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDNTLFLLKRE*ELLIIQ 20
Query: 498 LYVDDI 503
+YVDDI
Sbjct: 19 VYVDDI 2
Score = 27.7 bits (60), Expect(2) = 1e-13
Identities = 31/133 (23%), Positives = 52/133 (38%), Gaps = 3/133 (2%)
Frame = -1
Query: 307 PNAQYPHSIIGIGNRP*TTNLMLLLKIRLGSWFPVLLMLILLDVFGFLNTNIN---LTVI 363
P H ++ G+ N + L ++R G+WF L L++ GFL T+++ +
Sbjct: 584 PRMLKKHCVMQTGSILCKKNSISLKEVRYGTWFLDLKAKQ*LELGGFLETSLSDY*K*IQ 405
Query: 364 WSGIRLACCQWQVSTGGYRL*RDFQSSGETSYYSCGTKHCSVKELDHSST*CKECFSPWT 423
G R+ S RL* F + + Y C + + C+EC W
Sbjct: 404 VGGARIQ------SKRRNRL**GFFTCCQNGSY*NFNSFCCIHGVQAVPNGCEECIY*WR 243
Query: 424 PF*NRLHASASWI 436
+ + SWI
Sbjct: 242 SQRGGVCQATSWI 204
>BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (5%)
Length = 721
Score = 61.2 bits (147), Expect(2) = 1e-13
Identities = 31/76 (40%), Positives = 45/76 (58%), Gaps = 1/76 (1%)
Frame = -3
Query: 707 YRGVANVVAESCWLRNLLLELHCPISKATVVYCDNVSAI-YLSGNPVNHQRTKHIEMDIH 765
YR + + + E WL LL +L K ++YCDN SA +++ N +RTKHIE+D H
Sbjct: 374 YRSI*STICEIKWLTYLLNDLKFTFIKPAMLYCDNQSAARHIAANSSFLERTKHIELDCH 195
Query: 766 FVREKVALGQVHVLHV 781
VR K+ L H+LH+
Sbjct: 194 IVRVKLQLKLFHILHI 147
Score = 33.5 bits (75), Expect(2) = 1e-13
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 665 DWGGCPDTRRSTSGYCVYLGDNLISWSA 692
D C DT +S S +C++LGD+LI W +
Sbjct: 486 D*SSCLDT*KSISYFCIFLGDSLICWKS 403
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 72.0 bits (175), Expect = 9e-13
Identities = 37/80 (46%), Positives = 50/80 (62%)
Frame = +2
Query: 730 PISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQVHVLHVPTRYQYAD 789
PIS++ ++ CD +SA YL+ NPV H R KHI +DIHFVR+ V G++ V HV T Q AD
Sbjct: 2 PISQSGLLRCDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLAD 181
Query: 790 IFTKGLPKPLFDEFRSSLSI 809
TK L K R+ + +
Sbjct: 182 CLTKPLSKSRHQLLRNKIGV 241
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 71.2 bits (173), Expect = 1e-12
Identities = 36/71 (50%), Positives = 42/71 (58%)
Frame = +1
Query: 441 NPDHVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILLYV 500
N VC L KSLYGLKQAPRAWY+ S GF S+ D SL I Y+ +YV
Sbjct: 463 NKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGACIYLXIYV 642
Query: 501 DDIILTTSSHS 511
DDI++T SS S
Sbjct: 643 DDILITGSSAS 675
>BG587141 similar to PIR|H86461|H86 hypothetical protein AAF32440.1
[imported] - Arabidopsis thaliana, partial (20%)
Length = 731
Score = 65.1 bits (157), Expect = 1e-10
Identities = 38/89 (42%), Positives = 49/89 (54%)
Frame = +3
Query: 716 ESCWLRNLLLELHCPISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVREKVALGQ 775
++ WL++LL E+ + V+ DN S I L+ NPV H R HI HF+RE V GQ
Sbjct: 135 QAMWLQDLLSEVTWEPCEEVVIRIDNQSVIALTRNPVFHGRGNHIHKRYHFIRECVENGQ 314
Query: 776 VHVLHVPTRYQYADIFTKGLPKPLFDEFR 804
V V HVP A I TK L + +F E R
Sbjct: 315 VEVEHVPGEKHRAYI*TKALGRIIFREIR 401
>AJ497569 weakly similar to PIR|T04833|T04 hypothetical protein F21P8.50 -
Arabidopsis thaliana, partial (4%)
Length = 723
Score = 41.6 bits (96), Expect(2) = 4e-09
Identities = 21/46 (45%), Positives = 31/46 (66%)
Frame = +3
Query: 667 GGCPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEAEYRGVAN 712
G CP + R T+ +C +L +LISW +K+Q +SRS +EA R +AN
Sbjct: 84 GSCPYSIR*TTEFC-FLSSSLISWKSKKQCVVSRSFSEA**RALAN 218
Score = 38.1 bits (87), Expect(2) = 4e-09
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +2
Query: 712 NVVAESCWLRNLLLELHCPISKATVVYCDNVSAIYLSGNPVNHQRTKHIEMDIHFVR 768
N+ C++ ++ H S + YCDN+SA++++ N V H+RT H E D + V+
Sbjct: 221 NLRLHGCFIFYMISAKH---ST*VLQYCDNISALHIAANMVFHERT*HRETDPYIVQ 382
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 54.3 bits (129), Expect = 2e-07
Identities = 30/102 (29%), Positives = 52/102 (50%)
Frame = -3
Query: 604 LTFTRPDISYAVQQICLYMHDPRTSHFAALKRIIRYIQGTKEFGLHLSPSTVTNLSAYSD 663
LT P+I++++ + Y P H +K I +Y++G + GL S +L Y +
Sbjct: 525 LTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGYVN 346
Query: 664 ADWGGCPDTRRSTSGYCVYLGDNLISWSAKRQATLSRSSAEA 705
A + P RS +GY G+ +ISW + + +T++ SS A
Sbjct: 345 A*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>BF519055 similar to GP|21592754|gb| unknown {Arabidopsis thaliana}, partial
(30%)
Length = 675
Score = 53.5 bits (127), Expect = 3e-07
Identities = 30/79 (37%), Positives = 46/79 (57%), Gaps = 2/79 (2%)
Frame = -3
Query: 590 DSTLYRSLAGALQYLTFTRPDISYAVQQICLYMHDPRTSHFAALKRIIRYIQGT--KEFG 647
DS L S+ GAL Y+T T PD+S+++ + +MH P +F LK+++R+ + T K F
Sbjct: 646 DSKLVHSIVGALLYITVTCPDLSFSINKPSQFMHKPTQINFQQLKKVMRHPKLTIKKLFD 467
Query: 648 LHLSPSTVTNLSAYSDADW 666
L + A+SDADW
Sbjct: 466 L--------QIYAFSDADW 434
>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse
transcriptase homolog - rape retrotransposon copia-like
(fragment), partial (84%)
Length = 249
Score = 53.1 bits (126), Expect = 4e-07
Identities = 31/65 (47%), Positives = 40/65 (60%), Gaps = 3/65 (4%)
Frame = -1
Query: 443 DHVCLLKKSLYGLKQAPRAWYQRFASFLS---TIGFVNSKTDHSLFISTHGDDTTYILLY 499
DHVC L+KSLYGLKQ+PR WY+RF S+ S T G + T S Y++LY
Sbjct: 189 DHVCKLRKSLYGLKQSPRQWYKRFDSYRSSWATTGVL--MTVVST*TR*RMSRYIYLVLY 16
Query: 500 VDDII 504
VDD++
Sbjct: 15 VDDML 1
>BG452576 weakly similar to GP|12005223|gb|A reverse transcriptase-like
protein {Spiranthes hongkongensis}, partial (25%)
Length = 676
Score = 46.2 bits (108), Expect(2) = 6e-07
Identities = 29/100 (29%), Positives = 48/100 (48%)
Frame = +2
Query: 463 YQRFASFLSTIGFVNSKTDHSLFISTHGDDTTYILLYVDDIILTTSSHSLRDTIIAALRS 522
Y + S L ++G+ S DHS+F + G T L+Y+DDI+ HS + + L
Sbjct: 245 Y*KLLSTLISLGYKQSPNDHSIF--SFGRRFTIFLVYLDDIVFARDDHSETQLVKSHLDK 418
Query: 523 EFSLTDLGPLNYFLGVSATRHSGGLFLHQSKYAEDIISRA 562
F + LG L+Y +GV + Q KY +++ +
Sbjct: 419 NFIIIGLGTLHY-VGVKIA*SES*IIDDQCKYTIELLEES 535
Score = 25.8 bits (55), Expect(2) = 6e-07
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 445 VCLLKKSLYGLKQAPRAWYQRF 466
VC S+YGLK A R Y +F
Sbjct: 165 VCKFHNSIYGLKHAHRQ*YSKF 230
>CB894419 weakly similar to GP|10177935|db copia-type polyprotein
{Arabidopsis thaliana}, partial (2%)
Length = 170
Score = 52.0 bits (123), Expect = 9e-07
Identities = 28/55 (50%), Positives = 36/55 (64%)
Frame = +3
Query: 553 KYAEDIISRAKMVNCKPALTPVDTKSKLSATSGEKFDDSTLYRSLAGALQYLTFT 607
K A DI+ + KM + KP TPV+ K KL+ S K DST Y+SL G+L+YLT T
Sbjct: 6 KCASDILKKFKMEHSKPISTPVEEKLKLTRESDGKRVDSTHYKSLIGSLRYLTAT 170
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 52.0 bits (123), Expect = 9e-07
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = -1
Query: 444 HVCLLKKSLYGLKQAPRAWYQRFASFLSTIGFVNSKTDHSLFIST 488
+V LKK++YGLKQ+PRAWY + ++ L+ GF S+ DH+LF T
Sbjct: 144 NVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLFTLT 10
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.333 0.143 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,297,121
Number of Sequences: 36976
Number of extensions: 536257
Number of successful extensions: 4396
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 2421
Number of HSP's successfully gapped in prelim test: 262
Number of HSP's that attempted gapping in prelim test: 1881
Number of HSP's gapped (non-prelim): 2825
length of query: 813
length of database: 9,014,727
effective HSP length: 104
effective length of query: 709
effective length of database: 5,169,223
effective search space: 3664979107
effective search space used: 3664979107
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 62 (28.5 bits)
Medicago: description of AC144721.10