BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144720.3 + phase: 0 /pseudo
(949 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF004820 similar to GP|15055450|gb Hypothetical protein ZK370.4a... 232 8e-78
TC79927 similar to PIR|F84693|F84693 hypothetical protein At2g29... 245 5e-65
BG454416 similar to GP|6056191|gb putative RNA binding protein {... 170 4e-57
TC88869 similar to PIR|F84693|F84693 hypothetical protein At2g29... 161 1e-39
TC77512 similar to GP|22136912|gb|AAM91800.1 putative pumilio pr... 150 3e-36
TC81592 similar to GP|20465637|gb|AAM20149.1 putative pumilio/Mp... 134 2e-31
BQ751379 similar to GP|18376126|em conserved hypothetical protei... 59 9e-09
BF640841 similar to GP|8071634|gb|A pumilio domain-containing pr... 55 2e-07
TC89824 similar to GP|20465637|gb|AAM20149.1 putative pumilio/Mp... 50 4e-06
TC87936 similar to GP|15010674|gb|AAK73996.1 AT3g16810/K20I9_3 {... 40 0.004
TC79723 homologue to SP|Q01520|EF1A_PODAN Elongation factor 1-al... 33 0.68
TC82334 similar to GP|18252875|gb|AAL62364.1 unknown protein {Ar... 32 0.88
TC77175 weakly similar to PIR|C84713|C84713 probable dioxygenase... 32 1.5
TC91605 similar to GP|15809927|gb|AAL06891.1 At3g09760/F8A24.19 ... 31 2.0
TC86296 homologue to PIR|S46534|S46534 ubiquinol--cytochrome-c r... 30 3.4
CB894864 similar to PIR|D86201|D86 protein F12K11.6 [imported] -... 30 5.7
BM814968 similar to PIR|B96735|B96 unknown protein F23N20.6 [imp... 29 7.5
BI272955 weakly similar to PIR|T16995|T169 probable cinnamyl-alc... 29 9.8
TC78450 nodule-specific glycine-rich protein 3 [Medicago truncat... 29 9.8
TC91039 similar to PIR|C96640|C96640 hypothetical protein T25B24... 29 9.8
>BF004820 similar to GP|15055450|gb Hypothetical protein ZK370.4a
{Caenorhabditis elegans}, partial (1%)
Length = 459
Score = 232 bits (591), Expect(2) = 8e-78
Identities = 117/118 (99%), Positives = 117/118 (99%)
Frame = +1
Query: 339 MVSSLSGLNLSGARRAEQDNLLKSKLQVEVDNHANVMLSTPNNVNLPKHNELATDLNTFS 398
MVSSLSGLNLSGARRAEQDNLLKSKLQVEVDNHANVMLSTPNNVNLPKHNELATDLNTFS
Sbjct: 1 MVSSLSGLNLSGARRAEQDNLLKSKLQVEVDNHANVMLSTPNNVNLPKHNELATDLNTFS 180
Query: 399 LNERVNLLKKTASYANLRSNAHSTGNLTSIDFAGQVPSAYPANTTLNNVYNNHLETGL 456
LNERVNLLKKTASYANLRSNAHSTGNLTSIDFAGQVPSAYPANTTLNNVYNNHLET L
Sbjct: 181 LNERVNLLKKTASYANLRSNAHSTGNLTSIDFAGQVPSAYPANTTLNNVYNNHLETAL 354
Score = 78.2 bits (191), Expect(2) = 8e-78
Identities = 39/41 (95%), Positives = 39/41 (95%)
Frame = +2
Query: 487 IIQFQL*GVAEMDTI*MHWEIKYVLTSILQLWTHVSSNACS 527
II QL*GVAEMDTI*MHWEIKYVLTSILQLWTHVSSNACS
Sbjct: 335 IILRQL*GVAEMDTI*MHWEIKYVLTSILQLWTHVSSNACS 457
>TC79927 similar to PIR|F84693|F84693 hypothetical protein At2g29200
[imported] - Arabidopsis thaliana, partial (41%)
Length = 1844
Score = 245 bits (626), Expect = 5e-65
Identities = 138/264 (52%), Positives = 173/264 (65%), Gaps = 8/264 (3%)
Frame = +3
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETA+ EEK ++ EI PHA ALMTDVFGNYV+QKFFEHG SQR+ELAN+
Sbjct: 984 YGSRFIQQKLETATTEEKNMVYQEITPHALALMTDVFGNYVVQKFFEHGLASQRRELANK 1163
Query: 745 LTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVRAQWCNNEMC 796
L GHVL LSLQMYGCRVIQK + + ++ L G VR Q N+ +
Sbjct: 1164 LYGHVLTLSLQMYGCRVIQKAIEVVDLDQKIKMVQELDGNIM-----RCVRDQNGNHVI- 1325
Query: 797 T*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEE 856
+ C V S + + S + + + C++ TQ+ +M+E
Sbjct: 1326 -----QKCIECVPEDAIDFIISTFFDQVVTLSTHPYGCRVIQRVLEHCENPDTQQKVMDE 1490
Query: 857 IMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAF 916
I+ +V LAQDQYGNYV+QH+LEHGKP+ER+ +I +LAG IV+MSQQKFASNV+EKCL F
Sbjct: 1491 ILGAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGNIVQMSQQKFASNVVEKCLTF 1670
Query: 917 GSPEERQILVNEMLGTSDENEPLQ 940
G P ER +L NEMLGT+DENEPLQ
Sbjct: 1671 GGPSERLLLGNEMLGTTDENEPLQ 1742
Score = 55.5 bits (132), Expect = 1e-07
Identities = 51/256 (19%), Positives = 105/256 (40%), Gaps = 8/256 (3%)
Frame = +3
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ +E +++K K+ E+ + + D GN+VIQK E + +
Sbjct: 1191 LQMYGCRVIQKAIEVVDLDQKIKMVQELDGNIMRCVRDQNGNHVIQKCIECVPEDAIDFI 1370
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ V+ LS YGCRVIQ++L + C N
Sbjct: 1371 ISTFFDQVVTLSTHPYGCRVIQRVL----------------------EHCEN-------- 1460
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCT--FYSSLWVQSYSDCDDLKTQEIIMEEIMQ 859
P V + S Y + VQ + + I++E+
Sbjct: 1461 -----------PDTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAG 1607
Query: 860 SVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIEKC 913
++ ++Q ++ + V++ L G P+ER ++ +++ G + M + +FA+ V++K
Sbjct: 1608 NIVQMSQQKFASNVVEKCLTFGGPSERLLLGNEMLGTTDENEPLQAMMKDQFANYVVQKV 1787
Query: 914 LAFGSPEERQILVNEM 929
L ++R+++++ +
Sbjct: 1788 LETCDDQQRELILSRI 1835
Score = 31.2 bits (69), Expect = 2.0
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 714 RALMTDVFGNYVIQKFFEHGTDSQRKELANQLTGH 748
+A+M D F NYV+QK E D QR+ + +++ H
Sbjct: 1740 QAMMKDQFANYVVQKVLETCDDQQRELILSRI*VH 1844
>BG454416 similar to GP|6056191|gb putative RNA binding protein {Arabidopsis
thaliana}, partial (20%)
Length = 657
Score = 170 bits (430), Expect = 3e-42
Identities = 82/102 (80%), Positives = 83/102 (80%), Gaps = 4/102 (3%)
Frame = +2
Query: 772 GLGGG*C*SAEPNGVRAQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCT 831
GLGGG*C*SAEPNGVRAQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCT
Sbjct: 350 GLGGG*C*SAEPNGVRAQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCT 529
Query: 832 FYSSLWVQSYSDCDDL----KTQEIIMEEIMQSVCTLAQDQY 869
FYSSLWVQSYS+ K SVCTLAQDQY
Sbjct: 530 FYSSLWVQSYSEGSRTLR*SKNSRNYHGRNHASVCTLAQDQY 655
Score = 167 bits (422), Expect(2) = 4e-57
Identities = 104/182 (57%), Positives = 118/182 (64%), Gaps = 8/182 (4%)
Frame = +3
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 744
Y S FIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ
Sbjct: 111 YGSRFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQ 290
Query: 745 LTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVRAQWCNNEMC 796
LTGHVLPLSLQMYGCRVIQK L +++ L G A VR Q N+ +
Sbjct: 291 LTGHVLPLSLQMYGCRVIQKALEVVDVDQQSQMVSELSG-----AIMKCVRDQNGNHVI- 452
Query: 797 T*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEE 856
+ C V + + ++ + S + + + CDDLKTQEIIMEE
Sbjct: 453 -----QKCIESVPQNRIQFIITSFYGQVVALSTHPYGCRVIQRVLEHCDDLKTQEIIMEE 617
Query: 857 IM 858
IM
Sbjct: 618 IM 623
Score = 74.3 bits (181), Expect(2) = 4e-57
Identities = 34/36 (94%), Positives = 34/36 (94%)
Frame = +1
Query: 655 WRVDLLHPCSMSSRTTKPNLLNFQISLIMWYSSGFI 690
WRVDLLHPCSMSSRTTKPNLLNFQISLIMWYSS I
Sbjct: 1 WRVDLLHPCSMSSRTTKPNLLNFQISLIMWYSSVLI 108
Score = 58.9 bits (141), Expect = 9e-09
Identities = 33/119 (27%), Positives = 62/119 (51%)
Frame = +3
Query: 813 PSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNY 872
P E + + HV +++ Y S ++Q + ++ + I EI+ L D +GNY
Sbjct: 57 PFELSDIIDHVVQFST--DQYGSRFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNY 230
Query: 873 VIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEMLG 931
VIQ EHG ++R + ++L G ++ +S Q + VI+K L +++ +V+E+ G
Sbjct: 231 VIQKFFEHGTDSQRKELANQLTGHVLPLSLQMYGCRVIQKALEVVDVDQQSQMVSELSG 407
Score = 50.1 bits (118), Expect = 4e-06
Identities = 27/85 (31%), Positives = 45/85 (52%)
Frame = +3
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ LE V++++++ E+ + D GN+VIQK E ++ + +
Sbjct: 318 LQMYGCRVIQKALEVVDVDQQSQMVSELSGAIMKCVRDQNGNHVIQKCIESVPQNRIQFI 497
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLL 766
G V+ LS YGCRVIQ++L
Sbjct: 498 ITSFYGQVVALSTHPYGCRVIQRVL 572
Score = 48.1 bits (113), Expect = 2e-05
Identities = 49/229 (21%), Positives = 89/229 (38%), Gaps = 2/229 (0%)
Frame = +3
Query: 702 KTKIFP--EILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQLTGHVLPLSLQMYGC 759
KTK F +I+ H TD +G+ IQ+ E + ++ ++ ++ H L ++G
Sbjct: 48 KTKPFELSDIIDHVVQFSTDQYGSRFIQQKLETASVEEKTKIFPEILPHARALMTDVFGN 227
Query: 760 RVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSV 819
VIQK +G +Q E+ N +
Sbjct: 228 YVIQKFF----------------EHGTDSQ--RKELA--------------------NQL 293
Query: 820 YHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILE 879
HV + Y +Q + D+ Q ++ E+ ++ +DQ GN+VIQ +E
Sbjct: 294 TGHVLPLS--LQMYGCRVIQKALEVVDVDQQSQMVSELSGAIMKCVRDQNGNHVIQKCIE 467
Query: 880 HGKPNERTIVISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNE 928
N +I+ GQ+V +S + VI++ L + Q ++ E
Sbjct: 468 SVPQNRIQFIITSFYGQVVALSTHPYGCRVIQRVLEHCDDLKTQEIIME 614
>TC88869 similar to PIR|F84693|F84693 hypothetical protein At2g29200
[imported] - Arabidopsis thaliana, partial (26%)
Length = 1217
Score = 161 bits (408), Expect = 1e-39
Identities = 96/210 (45%), Positives = 127/210 (59%), Gaps = 8/210 (3%)
Frame = +3
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKLL--------LNLLTGLGGG*C*SAEPNGVRAQW 790
K ++ Q GHVL LSLQMYGCRVIQK + + ++ L G VR Q
Sbjct: 12 KRISKQAYGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVKELDGNIM-----RCVRDQN 176
Query: 791 CNNEMCT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQ 850
N+ + + C V S + + S + + + C+ TQ
Sbjct: 177 GNHVI------QKCIECVPEEAIDFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCESPATQ 338
Query: 851 EIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVI 910
+ +M+EI+ +V LAQDQYGNYV+QH+LEHGKP+ER+ +I +LAG+IV+MSQQKFASNV+
Sbjct: 339 QKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIKELAGKIVQMSQQKFASNVV 518
Query: 911 EKCLAFGSPEERQILVNEMLGTSDENEPLQ 940
EKCL F P ERQILV+EMLGT+DENEPLQ
Sbjct: 519 EKCLTFSGPAERQILVSEMLGTTDENEPLQ 608
Score = 53.5 bits (127), Expect = 4e-07
Identities = 51/254 (20%), Positives = 104/254 (40%), Gaps = 6/254 (2%)
Frame = +3
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ +E +++K ++ E+ + + D GN+VIQK E + +
Sbjct: 57 LQMYGCRVIQKAIEVVDLDQKIEMVKELDGNIMRCVRDQNGNHVIQKCIECVPEEAIDFI 236
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ V+ LS YGCRVIQ++L E C P
Sbjct: 237 VSTFFDQVVTLSTHPYGCRVIQRVL---------------------------EHCESPAT 335
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSV 861
+ + + V + A Y + VQ + + I++E+ +
Sbjct: 336 QQKVMD----------EILGAVSMLAQ--DQYGNYVVQHVLEHGKPHERSTIIKELAGKI 479
Query: 862 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIEKCLA 915
++Q ++ + V++ L P ER I++S++ G + M + +FA+ V++K L
Sbjct: 480 VQMSQQKFASNVVEKCLTFSGPAERQILVSEMLGTTDENEPLQAMMKDQFANYVVQKVLE 659
Query: 916 FGSPEERQILVNEM 929
+R+++++ +
Sbjct: 660 TCDDHQRELILSRI 701
Score = 51.6 bits (122), Expect = 1e-06
Identities = 28/83 (33%), Positives = 42/83 (49%), Gaps = 1/83 (1%)
Frame = +3
Query: 685 YSSGFIQQKLETA-SVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELAN 743
Y IQ+ LE S + K+ EIL L D +GNYV+Q EHG +R +
Sbjct: 282 YGCRVIQRVLEHCESPATQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSTIIK 461
Query: 744 QLTGHVLPLSLQMYGCRVIQKLL 766
+L G ++ +S Q + V++K L
Sbjct: 462 ELAGKIVQMSQQKFASNVVEKCL 530
Score = 38.1 bits (87), Expect = 0.016
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Frame = +3
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHA------RALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ L + E+ + E+L +A+M D F NYV+QK E D QR
Sbjct: 501 FASNVVEKCLTFSGPAERQILVSEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDHQR 680
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
+ + +++ H+ L YG ++ ++
Sbjct: 681 ELILSRIKVHLNALKKYTYGKHIVARV 761
Score = 33.9 bits (76), Expect = 0.30
Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +3
Query: 864 LAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNV---IEKCLAFG 917
+ +DQ+ NYV+Q +LE ++R +++S++ + + + + ++ +EK +A G
Sbjct: 612 MMKDQFANYVVQKVLETCDDHQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAG 782
>TC77512 similar to GP|22136912|gb|AAM91800.1 putative pumilio protein
{Arabidopsis thaliana}, partial (37%)
Length = 1826
Score = 150 bits (378), Expect = 3e-36
Identities = 100/291 (34%), Positives = 139/291 (47%), Gaps = 36/291 (12%)
Frame = +3
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVI------------------ 726
+ S FIQQKLE+ EEK +F E+LPHA LMTDVFGNYVI
Sbjct: 405 HGSRFIQQKLESCGAEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGNPEQRKELAEK 584
Query: 727 ------------------QKFFEHGTDSQRKELANQLTGHVLPLSLQMYGCRVIQKLLLN 768
QK E Q+ +L +L G+++ G VIQK + +
Sbjct: 585 LAGQILPLSLQMYGCRVIQKALEVIEHEQKAQLVRELDGNIMRCVRDQNGNHVIQKCIES 764
Query: 769 LLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKWKPCYSEVYRVCPSE*NSVYHHVFLWAS 828
+ T G + R Q N M H +
Sbjct: 765 IPTNKIGFIL-----SAFRGQVANLSM--------------------------HPY---G 842
Query: 829 CCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTI 888
C L C D + I++EI++SVC+LAQDQYGNYV QH+LE G+P ER+
Sbjct: 843 CRVIQRIL-----EHCTDEVQCQFIVDEILESVCSLAQDQYGNYVTQHVLERGRPQERSQ 1007
Query: 889 VISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEMLGTSDENEPL 939
+ISKL+G +V++SQ KFASNV+EKCL +G ER++L+ E++ ++N+ L
Sbjct: 1008IISKLSGHVVQLSQHKFASNVVEKCLEYGDASEREVLIVEIIAHDEQNDNL 1160
Score = 56.6 bits (135), Expect = 4e-08
Identities = 55/254 (21%), Positives = 107/254 (41%), Gaps = 6/254 (2%)
Frame = +3
Query: 682 IMWYSSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKEL 741
+ Y IQ+ LE E+K ++ E+ + + D GN+VIQK E ++ +
Sbjct: 612 LQMYGCRVIQKALEVIEHEQKAQLVRELDGNIMRCVRDQNGNHVIQKCIESIPTNKIGFI 791
Query: 742 ANQLTGHVLPLSLQMYGCRVIQKLLLNLLTGLGGG*C*SAEPNGVRAQWCNNEMCT*PKW 801
+ G V LS+ YGCRVIQ++L + C +E+
Sbjct: 792 LSAFRGQVANLSMHPYGCRVIQRIL----------------------EHCTDEV------ 887
Query: 802 KPCYSEVYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLKTQEIIMEEIMQSV 861
C V + S + + Y + Q + + + I+ ++ V
Sbjct: 888 -QCQFIVDEILES----------VCSLAQDQYGNYVTQHVLERGRPQERSQIISKLSGHV 1034
Query: 862 CTLAQDQYGNYVIQHILEHGKPNERTIVISKLAG------QIVKMSQQKFASNVIEKCLA 915
L+Q ++ + V++ LE+G +ER ++I ++ ++ M + +FA+ VI+K +
Sbjct: 1035VQLSQHKFASNVVEKCLEYGDASEREVLIVEIIAHDEQNDNLLTMMKDQFANYVIQKVID 1214
Query: 916 FGSPEERQILVNEM 929
S +R L++ +
Sbjct: 1215ICSENQRARLLSHI 1256
Score = 44.3 bits (103), Expect = 2e-04
Identities = 23/87 (26%), Positives = 42/87 (47%), Gaps = 6/87 (6%)
Frame = +3
Query: 685 YSSGFIQQKLETASVEEKTKIFPEILPHAR------ALMTDVFGNYVIQKFFEHGTDSQR 738
++S +++ LE E+ + EI+ H +M D F NYVIQK + +++QR
Sbjct: 1056 FASNVVEKCLEYGDASEREVLIVEIIAHDEQNDNLLTMMKDQFANYVIQKVIDICSENQR 1235
Query: 739 KELANQLTGHVLPLSLQMYGCRVIQKL 765
L + + H L YG ++ ++
Sbjct: 1236 ARLLSHIRAHANALKKYTYGKHIVARM 1316
Score = 35.8 bits (81), Expect = 0.080
Identities = 17/86 (19%), Positives = 45/86 (51%), Gaps = 6/86 (6%)
Frame = +3
Query: 833 YSSLWVQSYSDCDDLKTQEIIMEEIM------QSVCTLAQDQYGNYVIQHILEHGKPNER 886
++S V+ + D +E+++ EI+ ++ T+ +DQ+ NYVIQ +++ N+R
Sbjct: 1056 FASNVVEKCLEYGDASEREVLIVEIIAHDEQNDNLLTMMKDQFANYVIQKVIDICSENQR 1235
Query: 887 TIVISKLAGQIVKMSQQKFASNVIEK 912
++S + + + + +++ +
Sbjct: 1236 ARLLSHIRAHANALKKYTYGKHIVAR 1313
>TC81592 similar to GP|20465637|gb|AAM20149.1 putative pumilio/Mpt5 family
RNA-binding protein {Arabidopsis thaliana}, partial
(11%)
Length = 1064
Score = 134 bits (337), Expect = 2e-31
Identities = 77/190 (40%), Positives = 111/190 (57%), Gaps = 1/190 (0%)
Frame = +2
Query: 21 DTLQSELERILQEQRNQQFINRERGYDIYRSGSAPPTVEGSLSAFGSLRNFDYRANNSGR 80
D + E+ +L++QR + + E ++YRSGSAPPTVEGSLSA G L A +
Sbjct: 515 DEFEKEIGMLLRDQRRHEVDDHEPELNMYRSGSAPPTVEGSLSAVGGLFGGGSTAAAAVS 694
Query: 81 SNNNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQAGGGSSSIER 140
+ +G +E+E+RS PAYL YYYS+ ++NPRLPPPLLSKEDWR +QR + GG+S+I
Sbjct: 695 EFSGNGFGSEEELRSDPAYLQYYYSNVNLNPRLPPPLLSKEDWRFSQRLK--GGASAIGG 868
Query: 141 FGDWRK-NATSNGDSSSLFSMQPGFSVQQAENDLMELRKASGRNLPRQSSTQLLDRHMDG 199
GD RK N ++F+ PGF+ ++ E +++ K G + DG
Sbjct: 869 IGDRRKVNGADENGGRAVFATPPGFNNRKRETEVVADEKIRGS----------AEWGGDG 1018
Query: 200 MTRMPGTSLG 209
+ +PG LG
Sbjct: 1019LIGLPGLGLG 1048
>BQ751379 similar to GP|18376126|em conserved hypothetical protein
{Neurospora crassa}, partial (30%)
Length = 771
Score = 58.9 bits (141), Expect = 9e-09
Identities = 27/78 (34%), Positives = 48/78 (60%)
Frame = +1
Query: 853 IMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVIEK 912
++ +I + L QD +GNYV+Q+I++ +P ++ +I ++S+ KF+SNVIEK
Sbjct: 244 LIAKITEHAPILVQDPFGNYVVQYIIDLNEPAFTEPIVRMFQSRIGQLSRHKFSSNVIEK 423
Query: 913 CLAFGSPEERQILVNEML 930
CL R ++V+E+L
Sbjct: 424 CLRCAQDPSRDMIVDELL 477
Score = 40.0 bits (92), Expect = 0.004
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +1
Query: 690 IQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQLTGHV 749
+Q+ ++ AS ++K + +I HA L+ D FGNYV+Q + + + + +
Sbjct: 199 LQRCIDHASGDQKVWLIAKITEHAPILVQDPFGNYVVQYIIDLNEPAFTEPIVRMFQSRI 378
Query: 750 LPLSLQMYGCRVIQKLL 766
LS + VI+K L
Sbjct: 379 GQLSRHKFSSNVIEKCL 429
Score = 39.7 bits (91), Expect = 0.006
Identities = 51/250 (20%), Positives = 99/250 (39%), Gaps = 6/250 (2%)
Frame = +1
Query: 673 NLLNFQISLIMWYSSG--FIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFF 730
N L FQ+ ++ +G IQ+ L S ++ IF + + + T G V+Q+
Sbjct: 34 NALRFQVVELIQDLNGNHVIQKCLNKLSAQDAQFIFDAVGTNCVDVGTHRHGCCVLQRCI 213
Query: 731 EHGTDSQRKELANQLTGHVLPLSLQMYGCRVIQKLL-LNLLTGLGGG*C*SAEPNGVRAQ 789
+H + Q+ L ++T H L +G V+Q ++ LN
Sbjct: 214 DHASGDQKVWLIAKITEHAPILVQDPFGNYVVQYIIDLN--------------------- 330
Query: 790 WCNNEMCT*PKWKPCYSE-VYRVCPSE*NSVYHHVFLWASCCTFYSSLWVQSYSDCDDLK 848
+P ++E + R+ S + H F SS ++ C
Sbjct: 331 ------------EPAFTEPIVRMFQSRIGQLSRHKF---------SSNVIEKCLRCAQDP 447
Query: 849 TQEIIMEEIMQ--SVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFA 906
++++I++E++ + L +D Y NYVIQ LE+ P + ++ + + + +
Sbjct: 448 SRDMIVDELLVPGEMERLLRDSYANYVIQTALEYSTPRSKFRLVDVIRPILPSIRSTPYG 627
Query: 907 SNVIEKCLAF 916
+ K AF
Sbjct: 628 RRIQAKIQAF 657
Score = 35.4 bits (80), Expect = 0.10
Identities = 22/95 (23%), Positives = 43/95 (45%)
Frame = +1
Query: 851 EIIMEEIMQSVCTLAQDQYGNYVIQHILEHGKPNERTIVISKLAGQIVKMSQQKFASNVI 910
E+I+ + V L QD GN+VIQ L + + + V + + V+
Sbjct: 22 EMIINALRFQVVELIQDLNGNHVIQKCLNKLSAQDAQFIFDAVGTNCVDVGTHRHGCCVL 201
Query: 911 EKCLAFGSPEERQILVNEMLGTSDENEPLQVCPPF 945
++C+ S +++ L+ ++ E+ P+ V PF
Sbjct: 202 QRCIDHASGDQKVWLIAKI----TEHAPILVQDPF 294
>BF640841 similar to GP|8071634|gb|A pumilio domain-containing protein PPD1
{Populus tremula x Populus tremuloides}, partial (6%)
Length = 575
Score = 54.7 bits (130), Expect = 2e-07
Identities = 31/75 (41%), Positives = 45/75 (59%), Gaps = 2/75 (2%)
Frame = +1
Query: 50 RSGSAPPTVEGSLSAFGSLRNFDYR--ANNSGRSNNNDGVLTEDEIRSHPAYLSYYYSHE 107
RSGSAPP++EGS A +L A+ +G S +E ++ + P YL+YY S+
Sbjct: 307 RSGSAPPSMEGSFLAIENLLPLXNTQDASLTGLSXAVKNCESEXQLXADPXYLAYYNSNV 486
Query: 108 SINPRLPPPLLSKED 122
++NP LPPPL S E+
Sbjct: 487 NLNPXLPPPLTSWEN 531
>TC89824 similar to GP|20465637|gb|AAM20149.1 putative pumilio/Mpt5 family
RNA-binding protein {Arabidopsis thaliana}, partial (4%)
Length = 786
Score = 50.1 bits (118), Expect = 4e-06
Identities = 38/141 (26%), Positives = 69/141 (47%), Gaps = 16/141 (11%)
Frame = +2
Query: 327 NGHSSNMTDLADMVSSLSGLNLSGARRAEQDNLLKSKLQVEVDNHANVM----------- 375
NG SS M + AD+V++LSG+NLS A+ ++ L S+++ +VDNH +
Sbjct: 14 NGVSSGMNESADLVAALSGMNLS----ADDEDHLPSQVESDVDNHQRYLFGMQGGQDHGK 181
Query: 376 ----LSTPNNVNLPKHNELATDLNTFSLNERVNLLKKTASYANLRSNAHSTGNLTS-IDF 430
L + +L + ++LN SL+ + L TA +N++ G+ TS
Sbjct: 182 QHPYLKKSESGHLQSSGKSRSELNNLSLHRQAELQNSTAPL----NNSYFKGSPTSHFSG 349
Query: 431 AGQVPSAYPANTTLNNVYNNH 451
G + + Y + +N+ + N+
Sbjct: 350 GGNMQAQYQSIDGMNSSFTNY 412
>TC87936 similar to GP|15010674|gb|AAK73996.1 AT3g16810/K20I9_3 {Arabidopsis
thaliana}, partial (36%)
Length = 982
Score = 40.0 bits (92), Expect = 0.004
Identities = 20/78 (25%), Positives = 39/78 (49%)
Frame = +1
Query: 686 SSGFIQQKLETASVEEKTKIFPEILPHARALMTDVFGNYVIQKFFEHGTDSQRKELANQL 745
+S +Q ++ S E+ ++F E+ PH L + ++++K ++ + Q + L
Sbjct: 433 TSRVLQTCVKHCSQAERDQVFEELRPHFLNLAYSAYAVHLVKKMLDNASKKQLAGFISTL 612
Query: 746 TGHVLPLSLQMYGCRVIQ 763
GHV PL M G V++
Sbjct: 613 RGHVAPLLRHMVGSVVVE 666
>TC79723 homologue to SP|Q01520|EF1A_PODAN Elongation factor 1-alpha
(EF-1-alpha). {Podospora anserina}, complete
Length = 1537
Score = 32.7 bits (73), Expect = 0.68
Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 9/218 (4%)
Frame = -1
Query: 132 GGGSSSIERFGDWRKNATSNGDSSSLFSMQPGFSVQQAE-NDLMELRKASGRNLPRQSST 190
G G + G N + DS L + G + Q+ + + G +L T
Sbjct: 1441 GSGLGDLATGGSGLVNGLDDTDSDGLTHVTDGETAQRGVVGESLNAHGLGGNHLDDSGVT 1262
Query: 191 QLLDRHMDGMTRMPGTSLGVRRTCYSDILQDGFDQPTLSSNMSRPASHNAFVDIRDSTGI 250
+L D + R+ GT++ D+L+D + L+ N+ A + V D TG+
Sbjct: 1261 RL-DELGVVLDRLAGTAV--------DLLEDLGE---LAGNVGSVAVEDRGVTSTDLTGV 1118
Query: 251 VDREPLEGLRSSASTPGLVGLQNHGVNSH-------NFSSVVGSSLSRSTTPESHVIGRP 303
V L SSA ++G+ ++ + + + + L+ S H+ G
Sbjct: 1117 VKDNDLSVEGSSAGRGVVLGVTGDVATANVLDGDVLHVETNIVTGLALSELLVVHLDGLD 938
Query: 304 VGSGVPQM-GSKVFSAENIGLGNHNGHSSNMTDLADMV 340
V + G E+ L +GHS++ TDL D++
Sbjct: 937 FSGDVGRSEGDDHAGLEDTSLDTADGHSADTTDLVDIL 824
>TC82334 similar to GP|18252875|gb|AAL62364.1 unknown protein {Arabidopsis
thaliana}, partial (73%)
Length = 585
Score = 32.3 bits (72), Expect = 0.88
Identities = 21/58 (36%), Positives = 29/58 (49%)
Frame = +2
Query: 83 NNDGVLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFQAGGGSSSIER 140
NNDGVL+ E+R + SH I+ PP L++ V F G GS S++R
Sbjct: 104 NNDGVLSRAELRKAFESMRLIESHFGIDVTTPPEQLTRLYDSVFDTFD-GDGSGSVDR 274
>TC77175 weakly similar to PIR|C84713|C84713 probable dioxygenase [imported]
- Arabidopsis thaliana, partial (40%)
Length = 1425
Score = 31.6 bits (70), Expect = 1.5
Identities = 21/56 (37%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
Frame = +3
Query: 256 LEGLRSSASTPGLVGLQNHGVNSHNFSSVVGSSLSRSTTP---ESHVIGRPVGSGV 308
+E LRS+AST G + NHGV SV+G+ P V R +G+GV
Sbjct: 357 VEQLRSAASTVGFFQVINHGVAPELMRSVIGAMKKFHEQPADERKKVYCREMGTGV 524
>TC91605 similar to GP|15809927|gb|AAL06891.1 At3g09760/F8A24.19
{Arabidopsis thaliana}, partial (21%)
Length = 948
Score = 31.2 bits (69), Expect = 2.0
Identities = 26/114 (22%), Positives = 46/114 (39%), Gaps = 10/114 (8%)
Frame = +3
Query: 211 RRTCYSDILQDGF-----DQPTLSSNMSRPASHNAFVD-----IRDSTGIVDREPLEGLR 260
RR +S G+ D P+ SS+ +R F+ +++T +++ L
Sbjct: 96 RRVIFSPCTSPGYFVETNDSPSTSSSKNRSTLKKTFIPKLSFKYKNTTSEIEKAAFLALE 275
Query: 261 SSASTPGLVGLQNHGVNSHNFSSVVGSSLSRSTTPESHVIGRPVGSGVPQMGSK 314
S++ P + ++ SSL S P S+ + G G P MGS+
Sbjct: 276 GSSTLPSKKPFLSRTLSRMKSRGRKTSSLPVSPVPRSNPVYVHGGKGFPAMGSE 437
>TC86296 homologue to PIR|S46534|S46534 ubiquinol--cytochrome-c reductase
(EC 1.10.2.2) Rieske iron-sulfur protein - potato,
partial (73%)
Length = 1191
Score = 30.4 bits (67), Expect = 3.4
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -1
Query: 237 SHNAFVDIRDSTGIVDREPLEGLRSSASTPGLVGLQNHGVNSHNFSSVV-GSSLSRSTTP 295
SH+ F+ + +S R+P L ++ ++ ++ L N G H +VV GS L RST+
Sbjct: 717 SHSGFLTLSESC*GSRRDPTSTLFANFTSSSVLRLMNTGFPRHLTVTVVPGSMLDRSTSS 538
Query: 296 ES 297
E+
Sbjct: 537 EA 532
>CB894864 similar to PIR|D86201|D86 protein F12K11.6 [imported] - Arabidopsis
thaliana, partial (4%)
Length = 786
Score = 29.6 bits (65), Expect = 5.7
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = +1
Query: 256 LEGLRSSASTPGLVGLQNHGVNSHNFSSVVGS 287
+E LRS+AST G + NHGV SV+G+
Sbjct: 151 VEQLRSAASTVGFFQVINHGVAPELMRSVIGA 246
>BM814968 similar to PIR|B96735|B96 unknown protein F23N20.6 [imported] -
Arabidopsis thaliana, partial (34%)
Length = 742
Score = 29.3 bits (64), Expect = 7.5
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 440 ANTTLNNVYNNHLETGLLSLSLS 462
A TTL N + NH++ G++SL LS
Sbjct: 316 ATTTLENFFVNHIQHGVISLELS 248
>BI272955 weakly similar to PIR|T16995|T169 probable cinnamyl-alcohol
dehydrogenase (EC 1.1.1.195) - apple tree, partial (16%)
Length = 335
Score = 28.9 bits (63), Expect = 9.8
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 551 MLHNMET*RDFRKHISRLFLVNKS--NSMNFHFLANLGFLIK 590
ML + ++* H LFL+NK+ N +FHFL + FL++
Sbjct: 210 MLVSFDS*SGSETHFRLLFLLNKNVDNFDHFHFLIIINFLVE 335
>TC78450 nodule-specific glycine-rich protein 3 [Medicago truncatula]
Length = 941
Score = 28.9 bits (63), Expect = 9.8
Identities = 25/103 (24%), Positives = 43/103 (41%)
Frame = -1
Query: 582 LANLGFLIKGYLGVSHMVLECHIQESRYQIPHFLLLDLEIHCLRMNKSHT*IL**EVLWE 641
L +L L+ + G+ +L ++ + + H+ L+ L L +H + + W
Sbjct: 530 LPSLSNLLLHFHGLHLFLLHLYLVHYFFYLHHYSLVHLPKMILPNPANHRFLF---LFWI 360
Query: 642 GLAAHGMLILAITWRVDLLHPCSMSSRTTKPNLLNFQISLIMW 684
L H +L+L LLH M PNL N+Q + W
Sbjct: 359 LLLHHLVLLLPHLHHYSLLHIPKM----ILPNLANYQFLFLFW 243
>TC91039 similar to PIR|C96640|C96640 hypothetical protein T25B24.14
[imported] - Arabidopsis thaliana, partial (4%)
Length = 732
Score = 28.9 bits (63), Expect = 9.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 376 LSTPNNVNLPKHNELATDLNTFSLNERVNLLKKTASYANLRSNA 419
+STP + H +L +N N+R N +K A Y N+RS+A
Sbjct: 31 VSTPAVPLIRFHTQLKVGVNVIMDNKRENKRRKYAFYWNIRSSA 162
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.326 0.139 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,402,533
Number of Sequences: 36976
Number of extensions: 457685
Number of successful extensions: 3147
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 2289
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 770
Number of HSP's gapped (non-prelim): 2505
length of query: 949
length of database: 9,014,727
effective HSP length: 105
effective length of query: 844
effective length of database: 5,132,247
effective search space: 4331616468
effective search space used: 4331616468
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Medicago: description of AC144720.3