TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144645.10 - phase: 0 /pseudo
         (70 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG588495                                                               42  6e-05
TC80591                                                                36  0.003
TC88749                                                                29  0.30
TC90541 homologue to GP|11862963|dbj|BAB19344. putative curly le...    28  0.88
AJ496898 similar to GP|23171295|gb CG3731-PA {Drosophila melanog...    25  5.7
TC78550 weakly similar to GP|21689669|gb|AAM67456.1 unknown prot...    24  9.8

>BG588495 
          Length = 540

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 42 LSRKIEKNCLNGHVVKQIRWDLQLL 66
          LSRKIE NCL+G V+KQIR DLQL+
Sbjct: 13 LSRKIEMNCLSGRVIKQIRRDLQLM 87


>TC80591 
          Length = 734

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +1

Query: 1   VEAKPNTDGASVHVEASKYV 20
           VEAK N DGA VHVEASKYV
Sbjct: 664 VEAKSNIDGAFVHVEASKYV 723


>TC88749 
          Length = 1221

 Score = 29.3 bits (64), Expect = 0.30
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +3

Query: 37  FFQTTLSRKIEKNCLNGHVVKQIRWDLQLLHKD 69
           ++ T L  KI+K CL  +  KQI  DLQL+ KD
Sbjct: 531 YYTTKLHGKIKKTCLVRYGDKQIGPDLQLV*KD 629


>TC90541 homologue to GP|11862963|dbj|BAB19344. putative curly leaf protein
           {Oryza sativa (japonica cultivar-group)}, partial (36%)
          Length = 788

 Score = 27.7 bits (60), Expect = 0.88
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
 Frame = +2

Query: 10  ASVHVEASKYVDSSVL-----PLQAHEVDTARF----FQTTLSRKIEKNCLNGHVVKQI 59
           +++HV+A++ V+ SVL     P     VD  R     F+  + R++    +N H + QI
Sbjct: 101 STIHVDANQLVERSVLVF*MEPAVRSTVDAPRVVKIDFEAVIVRRVNAEVVNVHALLQI 277


>AJ496898 similar to GP|23171295|gb CG3731-PA {Drosophila melanogaster},
           partial (35%)
          Length = 698

 Score = 25.0 bits (53), Expect = 5.7
 Identities = 18/64 (28%), Positives = 25/64 (38%), Gaps = 9/64 (14%)
 Frame = -1

Query: 13  HVEASKYVDSSVLPLQAHEVDTARFFQTTLSRKIEKNCL---------NGHVVKQIRWDL 63
           H+  SK   S  +PL+     +   F    SR  +  CL         NGH   Q +W L
Sbjct: 320 HLVLSKKCTSFSMPLECSRPYSQLSFHLKQSRLPKGPCLCSRY*MIGKNGHNYPQQQWQL 141

Query: 64  QLLH 67
             +H
Sbjct: 140 SQMH 129


>TC78550 weakly similar to GP|21689669|gb|AAM67456.1 unknown protein
           {Arabidopsis thaliana}, partial (69%)
          Length = 1486

 Score = 24.3 bits (51), Expect = 9.8
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 2   EAKPNTDGASVHVEASKYVDSSVLPLQAHEV-DTARFFQTTLSRKIEKNCL 51
           EA+P+++    ++ +SKY ++S L LQ   + D   + ++ L + I   CL
Sbjct: 847 EARPSSEV*YQYLHSSKYPEASNLHLQHRTIPDWLNYSESKLKQHIML*CL 695


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.316    0.130    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,143,190
Number of Sequences: 36976
Number of extensions: 20912
Number of successful extensions: 90
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of query: 70
length of database: 9,014,727
effective HSP length: 46
effective length of query: 24
effective length of database: 7,313,831
effective search space: 175531944
effective search space used: 175531944
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)