TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144618.7 + phase: 0 /pseudo
         (1433 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2...    52  2e-06
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi...    42  0.001
AW686133                                                               32  1.4
TC88743 similar to GP|21593010|gb|AAM64959.1 minor allergen {Ara...    32  2.3
BG644690 weakly similar to GP|18542179|gb putative pol protein {...    31  3.0
BQ137242 similar to GP|9800281|gb|A pR69 {rat cytomegalovirus Ma...    31  3.9
TC86322 similar to GP|14517502|gb|AAK62641.1 At2g38310/T19C21.20...    30  6.7
BQ137233                                                               30  8.8
TC77540 similar to GP|21554004|gb|AAM63085.1 putative ubiquinol-...    30  8.8

>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
            [imported] - Arabidopsis thaliana, partial (10%)
          Length = 744

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 71/220 (32%), Positives = 90/220 (40%), Gaps = 5/220 (2%)
 Frame = +1

Query: 1071 IWFEASK*EMV*EVDIFIDSRRVYTVTIRLFTFHHSTRF*FYCLISICR*HYSCWFIYH* 1130
            IW +A K* MV  V        + T+    F F+   RF  Y ++SIC *H   W  Y *
Sbjct: 43   IWPQAGK*TMVF*VI*ISHFLWLSTILF*FFPFYKI*RFFIYYIVSIC**HCFSWK*YI* 222

Query: 1131 IH*NQSYT*CSFQDQRFGNSKVFFRIRGCSFQRGDLYFSKKVLS*PIGFFWTFSF*TCFY 1190
                  ++  SF +QR     +F R  GC  Q      SKK+ S*     W        Y
Sbjct: 223  NPTC*MFSY*SF*NQRPWFLTIFSRS*GC*KQTRHFT*SKKIYS*TFRG*W*SCCKIHSY 402

Query: 1191 SSGYFHQ-----IAPRQ*QTFC*CVLLQETHWKTSLSQYYKTRYHTSNSTTQSVFKCSYC 1245
            S  YF +      AP Q*    *     +TH +T L  YY + Y    ST + +   +  
Sbjct: 403  SL*YFFKTPQF*FAPLQ**NSI*-----KTHRQTYLFNYYSS*YILCCSTIKPICFETSA 567

Query: 1246 IALQSCL*GHQILET*PWTWFILS*TF*FTNPWLCRC*LG 1285
             +L  C *   I E  P    IL   F*F     CR *LG
Sbjct: 568  SSLSGCY*SFTISENCPCQRIILLSNF*FETF*FCRF*LG 687


>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
            partial (9%)
          Length = 675

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 50/188 (26%), Positives = 87/188 (45%), Gaps = 1/188 (0%)
 Frame = +3

Query: 941  SYGF*IRSIS*EWNLVYC*SSSQCEAYW**VGL*N*AQGRWQYRKIQS*TGG*RI*SS*R 1000
            SY  *++S  *  N+  C SSS  E+YW  VGL*+* + RW   +I S   G*   S+  
Sbjct: 105  SYEN*VQSFD**QNMGSCSSSSTQESYWLQVGL*S*RKPRWIC*QI*SQISG*GFQSNTW 284

Query: 1001 S*FF*YFFTSSQAYHSENFTCHSFNQKLAFTSVGCK*CFSTW*FARECLHEYTRRCL*C- 1059
             *  * F + ++  H +  + H ++  +  ++   + C   W  +R  ++  T     C 
Sbjct: 285  M*LH*NFLSCNKTCHYQAHSHHCYHL*MGNSTN*YQQCLFEWFSSRGSVYVSTSGI*SC* 464

Query: 1060 TKQGLQIT*EPIWFEASK*EMV*EVDIFIDSRRVYTVTIRLFTFHHSTRF*FYCLISICR 1119
               G+Q     +W +AS   MV*  +   +S   +  ++     +  +++  +   +IC 
Sbjct: 465  *ISGVQAEQITLWLKASTTCMV*XANQCTNSVWFH*KSL*SIITYLQSKWSLHLSXNICG 644

Query: 1120 *HYSCWFI 1127
            *H   WF+
Sbjct: 645  *HSHHWFL 668


>AW686133 
          Length = 551

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 887 FCIRTKILRYSLPYCIISFLCTSIIIPKVFFYVC 920
           F I+T ++R   P+C++    +SI I  + F++C
Sbjct: 23  FLIQTSLIRTVHPFCLLQLCVSSISITSILFFIC 124


>TC88743 similar to GP|21593010|gb|AAM64959.1 minor allergen {Arabidopsis
           thaliana}, partial (78%)
          Length = 1032

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 54  FV*SFFSCLESV*YADSLMDLEFSRFFNFSIYCFHGKRHGCV 95
           F+ SF+ CL SV*Y  S +  +    F F +YC   ++  C+
Sbjct: 786 FLISFYYCLSSV*YVFSFLCCQIDSGFFFPLYCDEERQFCCM 911


>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
            partial (22%)
          Length = 629

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 33/95 (34%), Positives = 41/95 (42%), Gaps = 2/95 (2%)
 Frame = -1

Query: 991  GG*RI*SS*RS*FF*YFFTSSQAYHSENFTCHSFNQKLAFTSVGCK*CFSTW*FARECLH 1050
            GG RI S  R+   * FFT  Q     NF        +     GC+ C   W   R  + 
Sbjct: 401  GGARIQSKRRNRL**GFFTCCQNGSY*NFNSFCCIHGVQAVPNGCEECIY*WRSQRGGVC 222

Query: 1051 EYTRRCL*C--TKQGLQIT*EPIWFEASK*EMV*E 1083
            + T     C  TK  +QI *+ IW EAS   MV*+
Sbjct: 221  QATSWI*RCRGTKSCVQIE*DTIWSEASSKSMV*K 117


>BQ137242 similar to GP|9800281|gb|A pR69 {rat cytomegalovirus Maastricht},
           partial (2%)
          Length = 1023

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/56 (28%), Positives = 26/56 (45%)
 Frame = -2

Query: 857 RHFFTINFQTCQN*KCTFLSDRLCM*FFICFCIRTKILRYSLPYCIISFLCTSIII 912
           R +F ++F       C   SDRLC  +FI FC+    +     +C +S   + + I
Sbjct: 965 RRWFVLSF-------CVCASDRLCSAYFILFCLHVFRVYRRAVHCTVSITLSLLFI 819


>TC86322 similar to GP|14517502|gb|AAK62641.1 At2g38310/T19C21.20
           {Arabidopsis thaliana}, partial (75%)
          Length = 956

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +2

Query: 865 QTCQN*KCTFLSDRLCM*FFICFCIRTKILRYSLPYCIISFLCTSIIIPKV 915
           QT +N     ++++ C *FF CF +   I+ +S  +C +S +   III ++
Sbjct: 773 QTAEN-----INNKCCS*FFFCFTLYNFII*FSW*FC*LSIVYIVIIITRL 910


>BQ137233 
          Length = 1097

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 434 SCIICA*ISFQSIICVKNI*FTKLHCHF*WFQMSYSGKE 472
           SC++C  +    ++CV     ++LHCH  W+  S SG++
Sbjct: 596 SCLVCLVL----VVCV-----SRLHCHRVWYTQSTSGED 507


>TC77540 similar to GP|21554004|gb|AAM63085.1 putative
           ubiquinol--cytochrome-c reductase {Arabidopsis
           thaliana}, complete
          Length = 583

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 12  FCNSYAIVEWF*LSFLGSFDAKSSWGKNEV*IC*WNY 48
           FCN  +   WF    LG+FD   + G N  * C W Y
Sbjct: 404 FCNQNSCPVWFLFCLLGNFDPMETLGDN--**CVWKY 508


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.380    0.168    0.727 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,402,439
Number of Sequences: 36976
Number of extensions: 1064841
Number of successful extensions: 18840
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3134
Number of HSP's successfully gapped in prelim test: 611
Number of HSP's that attempted gapping in prelim test: 15135
Number of HSP's gapped (non-prelim): 5085
length of query: 1433
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1325
effective length of database: 5,021,319
effective search space: 6653247675
effective search space used: 6653247675
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.8 bits)
S2: 65 (29.6 bits)