BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144609.1 + phase: 0
(269 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC89125 similar to PIR|H86253|H86253 hypothetical protein [impor... 233 8e-62
TC85869 homologue to GP|14531296|gb|AAK66161.1 pectate lyase {Fr... 147 1e-60
TC80800 similar to GP|6606532|gb|AAF19195.1| pectate lyase 1 {Mu... 228 2e-60
TC90147 similar to GP|21537059|gb|AAM61400.1 pectate lyase-like ... 211 3e-55
TC85871 similar to GP|7547009|gb|AAF63756.1| pectate lyase {Viti... 210 4e-55
TC87959 similar to SP|P24396|9612_LYCES Style development-specif... 206 6e-54
TC85870 similar to GP|18087517|gb|AAL58893.1 At1g67750/F12A21_12... 181 2e-46
BI272128 similar to PIR|T09524|T09 probable pectate lyase (EC 4.... 152 1e-43
BQ147652 homologue to PIR|T09524|T09 probable pectate lyase (EC ... 138 3e-33
TC85009 similar to GP|14531294|gb|AAK66160.1 pectate lyase B {Fr... 117 6e-27
BF004635 similar to PIR|H86253|H86 hypothetical protein [importe... 86 1e-17
BG645082 similar to GP|20466073|gb At5g04300/At5g04300 {Arabidop... 83 1e-16
BF519432 similar to GP|6682233|gb| putative pectate lyase {Arabi... 82 2e-16
AW688239 similar to GP|21537059|gb pectate lyase-like protein {A... 60 1e-09
TC90888 similar to GP|14289169|dbj|BAB59066. pectate lyase {Sali... 52 2e-07
BF518692 similar to PIR|S51509|S515 pectase lyase - Aspergillus ... 32 0.33
TC78874 similar to PIR|T49098|T49098 hypothetical protein F4F15.... 28 2.8
TC87525 similar to GP|9294498|dbj|BAB02717.1 aldose 1-epimerase-... 28 3.7
TC81101 similar to GP|22136262|gb|AAM91209.1 unknown protein {Ar... 27 6.3
>TC89125 similar to PIR|H86253|H86253 hypothetical protein [imported] -
Arabidopsis thaliana, partial (70%)
Length = 1334
Score = 233 bits (593), Expect = 8e-62
Identities = 119/239 (49%), Positives = 154/239 (63%), Gaps = 1/239 (0%)
Frame = +3
Query: 28 YKVTDPSDHPLNSTPGTLRYGASKIQGK-VWITFKRNMNIKLVRPLLISSFTTIDGRGVD 86
Y VTD SD P N PGTLRYGA IQ K +WI F+RNM + L L+++S+ TIDGRGV
Sbjct: 237 YIVTDSSDDPANPKPGTLRYGA--IQTKPLWIIFERNMVLTLKNELIMNSYKTIDGRGVK 410
Query: 87 VHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPDGKIISLGQVDGDAIRLVSASK 146
V I + C+ I +++IIHGI +H C+P G+V + DGDAI + ++S
Sbjct: 411 VEIGNGPCITIQGVSHVIIHGISIHDCKPSKAGLVRSTPDHVGRRRGADGDAISIFASSN 590
Query: 147 IWIDHNTLYDCQDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYN 206
IWIDH L DGL+D+ ST ITISNN+F + +KVMLLGH+D + DK MKVT+V+N
Sbjct: 591 IWIDHCFLARSTDGLIDIIHASTAITISNNYFTQHDKVMLLGHNDEYTADKIMKVTIVFN 770
Query: 207 YFGPNCHQRMPRIRHGYAHVANNMYMGWVQYAIGGSMEPSLKSQSNLFIAPVTGKKEVI 265
FG +RMPR+R GYAHV NN Y W YAIGGS P++ S+ N + AP K+ I
Sbjct: 771 RFGSGLIERMPRVRFGYAHVVNNKYDQWQMYAIGGSANPTILSEGNFYNAPNDHTKKQI 947
>TC85869 homologue to GP|14531296|gb|AAK66161.1 pectate lyase {Fragaria x
ananassa}, complete
Length = 2263
Score = 147 bits (370), Expect(2) = 1e-60
Identities = 74/156 (47%), Positives = 100/156 (63%), Gaps = 2/156 (1%)
Frame = +3
Query: 23 KDLIHYKVTDP-SDHPLNSTPGTLRYGASKIQGK-VWITFKRNMNIKLVRPLLISSFTTI 80
+D +Y VTDP D P+N PGTLR+ IQ + +WI FKR+M I+ + L+++SF TI
Sbjct: 561 RDGKYYVVTDPRDDDPVNPRPGTLRHAV--IQDRPLWIVFKRDMVIQFKQELIVNSFKTI 734
Query: 81 DGRGVDVHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPDGKIISLGQVDGDAIR 140
DGRG +VHIA+ C+ I TN+IIHG+ +H C+P MV + DGDA+
Sbjct: 735 DGRGANVHIANGGCITIQYVTNVIIHGLHIHDCKPTGNAMVRSSETHFGWRTMADGDAVS 914
Query: 141 LVSASKIWIDHNTLYDCQDGLLDVTRGSTDITISNN 176
+ +S IW+DHN+L C DGL+D GST ITISNN
Sbjct: 915 IFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNN 1022
Score = 103 bits (258), Expect(2) = 1e-60
Identities = 46/81 (56%), Positives = 56/81 (68%)
Frame = +1
Query: 178 FREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNMYMGWVQY 237
F N+V+LLGH D + RDK M+VT+ YN+FG QRMPR RHGY HV NN Y W Y
Sbjct: 1027 FTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMY 1206
Query: 238 AIGGSMEPSLKSQSNLFIAPV 258
AIGGS +P++ SQ N + APV
Sbjct: 1207 AIGGSADPTINSQGNRYNAPV 1269
>TC80800 similar to GP|6606532|gb|AAF19195.1| pectate lyase 1 {Musa
acuminata}, partial (86%)
Length = 1216
Score = 228 bits (581), Expect = 2e-60
Identities = 112/231 (48%), Positives = 144/231 (61%), Gaps = 1/231 (0%)
Frame = +1
Query: 28 YKVTDPSDH-PLNSTPGTLRYGASKIQGKVWITFKRNMNIKLVRPLLISSFTTIDGRGVD 86
Y VTD D P+ PGTLR+ + + +WI F R+M I+L L+++SF TIDGRG
Sbjct: 310 YVVTDSGDDDPVTPKPGTLRFAVIQDE-PLWIIFARDMVIQLKEELIMNSFKTIDGRGAS 486
Query: 87 VHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPDGKIISLGQVDGDAIRLVSASK 146
VHIA C+ I TN+IIHGI +H C+ MV G DGD + + S
Sbjct: 487 VHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPGHYGWRTVSDGDGVSIFGGSH 666
Query: 147 IWIDHNTLYDCQDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYN 206
+W+DH +L +C DGL+D GST ITISNN+ +KVMLLGH D + +DKNM+VT+ +N
Sbjct: 667 VWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFN 846
Query: 207 YFGPNCHQRMPRIRHGYAHVANNMYMGWVQYAIGGSMEPSLKSQSNLFIAP 257
+FG QRMPR RHGY HV NN Y W YAIGGS P++ SQ N F+AP
Sbjct: 847 HFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAP 999
>TC90147 similar to GP|21537059|gb|AAM61400.1 pectate lyase-like protein
{Arabidopsis thaliana}, partial (55%)
Length = 1093
Score = 211 bits (536), Expect = 3e-55
Identities = 113/246 (45%), Positives = 145/246 (58%), Gaps = 2/246 (0%)
Frame = +3
Query: 3 ETSTTTCRLLSGICRENDKRKDLIH-YKVTDPSDHP-LNSTPGTLRYGASKIQGKVWITF 60
+ S+ RL + + + +RK + Y VTD SD+ +N PGTLRY + + +WI F
Sbjct: 357 QQSSKVSRLCNRVWTKCQRRKRCVKFYIVTDSSDNDAVNPKPGTLRYAVIQNE-PLWIVF 533
Query: 61 KRNMNIKLVRPLLISSFTTIDGRGVDVHIADNACLMIYKATNIIIHGIRVHHCRPQAPGM 120
NM IKL + L+ +SF TIDGRG DVHI C+ + +N+IIH I VHHC P
Sbjct: 534 PSNMMIKLSQELIFNSFKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTN 713
Query: 121 VMGPDGKIISLGQVDGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTDITISNNWFRE 180
V + DGD I + + IWIDH TL C+DGL+DV GST ITISNN F
Sbjct: 714 VRSSPEHYGYRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDVVMGSTAITISNNHFSH 893
Query: 181 QNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNMYMGWVQYAIG 240
N+VMLLGH D + D M+VT+ +N+FG QRMPR R GY HV NN + W YAIG
Sbjct: 894 HNEVMLLGHSDHYKPDSAMQVTIAFNHFGQQLVQRMPRCRLGYIHVVNNDFTRWEMYAIG 1073
Query: 241 GSMEPS 246
GS P+
Sbjct: 1074GSGGPT 1091
>TC85871 similar to GP|7547009|gb|AAF63756.1| pectate lyase {Vitis
vinifera}, partial (84%)
Length = 1481
Score = 210 bits (535), Expect = 4e-55
Identities = 101/202 (50%), Positives = 127/202 (62%)
Frame = +1
Query: 56 VWITFKRNMNIKLVRPLLISSFTTIDGRGVDVHIADNACLMIYKATNIIIHGIRVHHCRP 115
+WI F R+M IKL L+++SF TIDGRG VHIA C+ I TNIIIHGI +H C+
Sbjct: 256 LWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQ 435
Query: 116 QAPGMVMGPDGKIISLGQVDGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTDITISN 175
MV DGD + + S +W+DH +L +C+DGL+D GST ITISN
Sbjct: 436 GGNAMVRDSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIYGSTAITISN 615
Query: 176 NWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNMYMGWV 235
N+ +KVMLLGH D + DKNM+VT+ +N+FG QRMPR R GY HV NN Y W
Sbjct: 616 NYMTHHDKVMLLGHSDSYTHDKNMQVTIAFNHFGERLVQRMPRCRLGYFHVVNNDYTHWE 795
Query: 236 QYAIGGSMEPSLKSQSNLFIAP 257
YAIGGS P++ SQ N F+AP
Sbjct: 796 MYAIGGSANPTINSQGNRFVAP 861
>TC87959 similar to SP|P24396|9612_LYCES Style development-specific protein
9612 precursor. [Tomato] {Lycopersicon esculentum},
partial (68%)
Length = 1340
Score = 206 bits (525), Expect = 6e-54
Identities = 99/198 (50%), Positives = 129/198 (65%)
Frame = +1
Query: 60 FKRNMNIKLVRPLLISSFTTIDGRGVDVHIADNACLMIYKATNIIIHGIRVHHCRPQAPG 119
FKR+M I+L + LL++S+ TIDGRG VHIA+ C+ I+ N+IIHGI VH C P
Sbjct: 1 FKRDMVIQLKQELLVNSYKTIDGRGASVHIANGGCITIHYVNNVIIHGIHVHDCVPTGNT 180
Query: 120 MVMGPDGKIISLGQVDGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTDITISNNWFR 179
+ DGD I + ++ IWIDH +L +C+DGL+DV GS ITISNN+
Sbjct: 181 NIRDSPEHSGFWTVSDGDGISVFNSQHIWIDHCSLSNCRDGLIDVIHGSNAITISNNYMT 360
Query: 180 EQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNMYMGWVQYAI 239
+KVMLLGH D + +DK+M+VT+ +N+FG QRMPR RHGY HV NN Y W YAI
Sbjct: 361 HHDKVMLLGHSDSYTQDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAI 540
Query: 240 GGSMEPSLKSQSNLFIAP 257
GGS P++ SQ N F+AP
Sbjct: 541 GGSANPTINSQGNRFLAP 594
>TC85870 similar to GP|18087517|gb|AAL58893.1 At1g67750/F12A21_12
{Arabidopsis thaliana}, partial (73%)
Length = 1521
Score = 181 bits (460), Expect = 2e-46
Identities = 91/192 (47%), Positives = 120/192 (62%), Gaps = 1/192 (0%)
Frame = +2
Query: 28 YKVTDPSD-HPLNSTPGTLRYGASKIQGKVWITFKRNMNIKLVRPLLISSFTTIDGRGVD 86
Y VTD SD +P+ PGTLR+ +++ +WI F R+M IKL L+++SF TIDGRG
Sbjct: 338 YVVTDASDDNPVTPKPGTLRHAVIQVE-PLWIIFARDMVIKLKEELIMNSFKTIDGRGAS 514
Query: 87 VHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPDGKIISLGQVDGDAIRLVSASK 146
VHIA C+ I TNIIIHGI +H C+ MV DGD + + S
Sbjct: 515 VHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRDSPRHFGWRTISDGDGVSIFGGSH 694
Query: 147 IWIDHNTLYDCQDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYN 206
+W+DH +L +C+DGL+D GST ITISNN+ +KVMLLGH D + DKNM+VT+ +N
Sbjct: 695 VWVDHCSLSNCEDGLIDAIYGSTAITISNNYMTHHDKVMLLGHSDSYTHDKNMQVTIAFN 874
Query: 207 YFGPNCHQRMPR 218
+FG QRMPR
Sbjct: 875 HFGEGLVQRMPR 910
Score = 43.1 bits (100), Expect = 1e-04
Identities = 19/33 (57%), Positives = 21/33 (63%)
Frame = +3
Query: 218 RIRHGYAHVANNMYMGWVQYAIGGSMEPSLKSQ 250
R R GY HV NN Y W YAIGGS P++ SQ
Sbjct: 1419 RCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQ 1517
>BI272128 similar to PIR|T09524|T09 probable pectate lyase (EC 4.2.2.2) -
alfalfa, partial (47%)
Length = 682
Score = 152 bits (383), Expect(3) = 1e-43
Identities = 74/171 (43%), Positives = 109/171 (63%)
Frame = +3
Query: 53 QGKVWITFKRNMNIKLVRPLLISSFTTIDGRGVDVHIADNACLMIYKATNIIIHGIRVHH 112
+G +WITF R+M I+L + L++SS TIDGRG +V I D A + + N+IIHG+ + +
Sbjct: 72 KGPLWITFARSMVIRLNQELMVSSDKTIDGRGANVQIRDGAGITMQFVNNVIIHGLHIQN 251
Query: 113 CRPQAPGMVMGPDGKIISLGQVDGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTDIT 172
+ + G++ + DGDAI + +S IWIDH +L +C+DGL+D+ +GST IT
Sbjct: 252 IKAKPGGLIRDSFDHTGQRTRSDGDAISIYGSSNIWIDHLSLSECEDGLVDIIQGSTGIT 431
Query: 173 ISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGY 223
ISN + N VML G D + DK M++TV +N+FG QRMPR R+G+
Sbjct: 432 ISNCHMTKHNDVMLFGASDSYTGDKLMQITVAFNHFGQGLIQRMPRCRYGF 584
Score = 35.4 bits (80), Expect(3) = 1e-43
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 222 GYAHVANNMYMGWVQYAIGGSM 243
G+ HV NN Y W+ YAIGGS+
Sbjct: 580 GFVHVLNNDYTHWIMYAIGGSL 645
Score = 26.9 bits (58), Expect(3) = 1e-43
Identities = 13/21 (61%), Positives = 16/21 (75%), Gaps = 1/21 (4%)
Frame = +2
Query: 30 VTDPSDHPL-NSTPGTLRYGA 49
VTD SD+ + N PGTLR+GA
Sbjct: 2 VTDESDNDMVNPKPGTLRFGA 64
>BQ147652 homologue to PIR|T09524|T09 probable pectate lyase (EC 4.2.2.2) -
alfalfa, partial (46%)
Length = 716
Score = 138 bits (347), Expect = 3e-33
Identities = 67/123 (54%), Positives = 84/123 (67%)
Frame = +1
Query: 135 DGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDGFV 194
DGDAI + +S IWIDH +L +C+DGL+DV +GST +TISN + N VML G D +
Sbjct: 16 DGDAISVFGSSNIWIDHISLSNCEDGLVDVIQGSTAVTISNCHMTKHNDVMLFGASDTYQ 195
Query: 195 RDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNMYMGWVQYAIGGSMEPSLKSQSNLF 254
DK M+VTV +N+FG QRMPR R G+ HV NN Y W+ YAIGGS P++ SQ N F
Sbjct: 196 DDKIMQVTVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWIMYAIGGSSAPTILSQGNRF 375
Query: 255 IAP 257
IAP
Sbjct: 376 IAP 384
>TC85009 similar to GP|14531294|gb|AAK66160.1 pectate lyase B {Fragaria x
ananassa}, partial (55%)
Length = 914
Score = 117 bits (292), Expect = 6e-27
Identities = 66/151 (43%), Positives = 88/151 (57%), Gaps = 2/151 (1%)
Frame = +3
Query: 23 KDLIHYKVTDP-SDHPLNSTPGTLRYGASKIQGK-VWITFKRNMNIKLVRPLLISSFTTI 80
+D +Y V +P D P+N PGTLR+ IQ + +WI FKR+M I L + L+++SF TI
Sbjct: 468 RDGRYYVVNNPRDDDPVNPRPGTLRHAV--IQDRPLWIVFKRDMVITLKQELIMNSFKTI 641
Query: 81 DGRGVDVHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPDGKIISLGQVDGDAIR 140
DGRG +VHIA AC+ I TN+IIHG+ +H C+P MV DGD I
Sbjct: 642 DGRGANVHIAFGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPFHFGWRTMADGDGIS 821
Query: 141 LVSASKIWIDHNTLYDCQDGLLDVTRGSTDI 171
+ S IW ++L +C DGL D GST I
Sbjct: 822 IFGFSHIWD*PHSLSNCADGLCDAIMGSTAI 914
>BF004635 similar to PIR|H86253|H86 hypothetical protein [imported] -
Arabidopsis thaliana, partial (30%)
Length = 538
Score = 85.9 bits (211), Expect = 1e-17
Identities = 41/84 (48%), Positives = 55/84 (64%)
Frame = +3
Query: 28 YKVTDPSDHPLNSTPGTLRYGASKIQGKVWITFKRNMNIKLVRPLLISSFTTIDGRGVDV 87
Y+VTDPSD P+N GTLRYG + + VWI F +M IKL L+++S+ TIDGRG V
Sbjct: 285 YEVTDPSDDPINPKKGTLRYGVIQAE-PVWIIFSNDMVIKLKNELIVNSYKTIDGRGAKV 461
Query: 88 HIADNACLMIYKATNIIIHGIRVH 111
I + C+ I +++I HGI VH
Sbjct: 462 EIGNGPCITIQGVSHVIAHGISVH 533
>BG645082 similar to GP|20466073|gb At5g04300/At5g04300 {Arabidopsis
thaliana}, partial (41%)
Length = 782
Score = 83.2 bits (204), Expect = 1e-16
Identities = 36/71 (50%), Positives = 47/71 (65%)
Frame = +3
Query: 187 LGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNMYMGWVQYAIGGSMEPS 246
LGH+D + D+ M+VT+ +N+FG QRMPR R GY HV NN + W YAIGGS P+
Sbjct: 3 LGHNDKYTPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPT 182
Query: 247 LKSQSNLFIAP 257
+ SQ N + AP
Sbjct: 183 INSQGNRYTAP 215
>BF519432 similar to GP|6682233|gb| putative pectate lyase {Arabidopsis
thaliana}, partial (45%)
Length = 531
Score = 82.0 bits (201), Expect = 2e-16
Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 1/152 (0%)
Frame = +2
Query: 38 LNSTPGTLRYGASKIQGKVWITFKRNMNIKLVRPLLISSFTTIDGRGVDVHIADNACLMI 97
L+ PG+LR K + +WI F+ + I L L +SS+ TIDGRG + + L +
Sbjct: 134 LDDGPGSLRDACRKKE-PLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQKIKLTGKG-LRL 307
Query: 98 YKATNIIIHGIRVHHCRPQAPGMVMGPDGKIISLGQVDGDAIRLVSASK-IWIDHNTLYD 156
+ ++II + + R GPD DAI++ SK IWID TL D
Sbjct: 308 KECEHVIICNLEIEGGR--------GPDV----------DAIQIKPNSKHIWIDRCTLSD 433
Query: 157 CQDGLLDVTRGSTDITISNNWFREQNKVMLLG 188
+DGL+D+TRGSTDITIS F + +K +L+G
Sbjct: 434 FEDGLIDITRGSTDITISRCHFHQHDKTILIG 529
>AW688239 similar to GP|21537059|gb pectate lyase-like protein {Arabidopsis
thaliana}, partial (23%)
Length = 625
Score = 59.7 bits (143), Expect = 1e-09
Identities = 33/63 (52%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Frame = +1
Query: 28 YKVTDPSDHP-LNSTPGTLRYGASKIQGKVWITFKRNMNIKLVRPLLISSFTTIDGRGVD 86
Y VTD SD + PGTLRYG K + +WI F NM IKL + L+ +S+ TID RG D
Sbjct: 412 YVVTDSSDDDAVTPKPGTLRYGVIKNE-PLWIVFPXNMMIKLKQELIFNSYKTIDXRGAD 588
Query: 87 VHI 89
VHI
Sbjct: 589 VHI 597
>TC90888 similar to GP|14289169|dbj|BAB59066. pectate lyase {Salix
gilgiana}, partial (31%)
Length = 481
Score = 52.4 bits (124), Expect = 2e-07
Identities = 25/48 (52%), Positives = 34/48 (70%)
Frame = +1
Query: 28 YKVTDPSDHPLNSTPGTLRYGASKIQGKVWITFKRNMNIKLVRPLLIS 75
Y VTDP DH +N PGTLRYG + + +WI FKR+M IKL + L+++
Sbjct: 340 YVVTDPGDHAVNPKPGTLRYGVIQ-EEPLWIIFKRDMVIKLKQELMMN 480
>BF518692 similar to PIR|S51509|S515 pectase lyase - Aspergillus sp., partial
(7%)
Length = 361
Score = 31.6 bits (70), Expect = 0.33
Identities = 19/56 (33%), Positives = 28/56 (49%)
Frame = +1
Query: 97 IYKATNIIIHGIRVHHCRPQAPGMVMGPDGKIISLGQVDGDAIRLVSASKIWIDHN 152
I K +N+I+ ++ H PDGK Q+D DA ++K+WIDHN
Sbjct: 247 IRKVSNVIVRNLKFHDA----------PDGK----DQIDIDA-----STKVWIDHN 357
>TC78874 similar to PIR|T49098|T49098 hypothetical protein F4F15.300 -
Arabidopsis thaliana, partial (74%)
Length = 1630
Score = 28.5 bits (62), Expect = 2.8
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 114 RPQAPGMVMGPDGKIISLGQVDGDAIRLVSASKIWIDH 151
R A M + DGK +SL DGD I +V K+ I H
Sbjct: 914 RKSASAMAVSHDGKYLSLASKDGD-ICVVEVKKMQIHH 1024
>TC87525 similar to GP|9294498|dbj|BAB02717.1 aldose 1-epimerase-like
protein {Arabidopsis thaliana}, partial (94%)
Length = 1331
Score = 28.1 bits (61), Expect = 3.7
Identities = 42/163 (25%), Positives = 63/163 (37%), Gaps = 42/163 (25%)
Frame = +3
Query: 37 PLNSTPGTLRYGASKIQGKVW------------ITFKRNM---------NIKLVRPLLIS 75
PLN P TL G KVW ITFK + +I + ++
Sbjct: 297 PLNKAPNTLHGGNVGFDKKVWDVLEYKKGETPSITFKYDSHDGEEGYPGDITVTATYTLT 476
Query: 76 SFTT--IDGRGVD------VHIADNAC--LMIYKATNIIIHGIRV--HHCRPQAPGMVMG 123
S TT +D GV +++A + L + + NI+ H I++ +H P V
Sbjct: 477 SSTTMRLDMEGVAKNKPTIINLAQHTYWNLAGHSSGNILDHSIKISANHVTPVDQNTV-- 650
Query: 124 PDGKIISLGQVD---------GDAIRLVSASKIWIDHNTLYDC 157
P G+I+ + GD I V + DHN + DC
Sbjct: 651 PTGEIVPVKGTPFDFTSEKRIGDTINQVG---LGYDHNYVLDC 770
>TC81101 similar to GP|22136262|gb|AAM91209.1 unknown protein {Arabidopsis
thaliana}, partial (37%)
Length = 1188
Score = 27.3 bits (59), Expect = 6.3
Identities = 17/35 (48%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Frame = +2
Query: 197 KNMKVTVVYNYFGPNCHQRMPRIR-HGYAHVANNM 230
KN +T N FG N HQ+ P R HG A+ ANN+
Sbjct: 875 KNSSITRSSNSFGSNNHQKAPIKRCHGGAY-ANNV 976
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,017,222
Number of Sequences: 36976
Number of extensions: 124526
Number of successful extensions: 546
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of query: 269
length of database: 9,014,727
effective HSP length: 95
effective length of query: 174
effective length of database: 5,502,007
effective search space: 957349218
effective search space used: 957349218
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Medicago: description of AC144609.1