BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144592.7 + phase: 0
(129 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC78257 similar to PIR|T47981|T47981 homeobox-leucine zipper pro... 242 3e-65
TC77101 similar to GP|15148920|gb|AAK84887.1 homeodomain leucine... 114 1e-26
TC79046 similar to PIR|T12634|T12634 homeotic protein - common s... 105 5e-24
TC85738 similar to GP|6091551|gb|AAF01764.2| homeodomain-leucine... 105 5e-24
TC77076 similar to PIR|T07734|T07734 homeotic protein VAHOX1 - t... 104 8e-24
TC90396 similar to PIR|H96719|H96719 homeobox gene 13 protein 1... 100 1e-22
TC86963 similar to GP|15148918|gb|AAK84886.1 homeodomain leucine... 100 2e-22
TC85737 similar to GP|6091551|gb|AAF01764.2| homeodomain-leucine... 99 5e-22
TC91273 similar to GP|1435022|dbj|BAA05625.1 DNA-binding protein... 97 2e-21
TC79846 similar to GP|8843728|dbj|BAA97276.1 homeodomain transcr... 84 2e-17
AW776579 similar to GP|15148918|gb| homeodomain leucine zipper p... 74 2e-14
TC88711 similar to PIR|T07614|T07614 homeobox-leucine zipper pro... 71 1e-13
TC86390 similar to PIR|T52371|T52371 homeobox protein HAT9 [impo... 70 2e-13
TC87859 similar to SP|P46604|HT22_ARATH Homeobox-leucine zipper ... 69 7e-13
BM813592 similar to GP|20161555|db putative homeodomain-leucine ... 65 7e-12
TC84739 homologue to PIR|T52367|T52367 homeobox protein HAT14 [i... 60 2e-10
BQ141208 similar to PIR|S71477|S71 homeotic protein ovule-speci... 56 3e-09
TC88555 similar to PIR|T07614|T07614 homeobox-leucine zipper pro... 54 1e-08
BG584873 similar to GP|20161555|dbj putative homeodomain-leucine... 54 2e-08
BG647110 homologue to PIR|T10695|T10 transcription factor HD-zip... 47 2e-06
>TC78257 similar to PIR|T47981|T47981 homeobox-leucine zipper protein
ATHB-12 - Arabidopsis thaliana, partial (45%)
Length = 994
Score = 242 bits (618), Expect = 3e-65
Identities = 122/123 (99%), Positives = 123/123 (99%)
Frame = +2
Query: 1 MEYSQYSSYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRK 60
MEYSQYSSYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRK
Sbjct: 146 MEYSQYSSYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRK 325
Query: 61 KLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLL 120
KLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLL
Sbjct: 326 KLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLL 505
Query: 121 IQV 123
IQ+
Sbjct: 506 IQL 514
>TC77101 similar to GP|15148920|gb|AAK84887.1 homeodomain leucine zipper
protein HDZ3 {Phaseolus vulgaris}, complete
Length = 1532
Score = 114 bits (284), Expect = 1e-26
Identities = 51/91 (56%), Positives = 73/91 (80%)
Frame = +1
Query: 36 KRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREY 95
+R T EQ+ LE FE E +LEP +K QLA++LGLQPRQVA+WFQN+RARWK+KQLER+Y
Sbjct: 637 RRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDY 816
Query: 96 NKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
+ L++SY++L S ++S+ KE + L +V+S+
Sbjct: 817 DVLKSSYDSLLSTYDSINKENEKLKSEVVSL 909
>TC79046 similar to PIR|T12634|T12634 homeotic protein - common sunflower,
partial (56%)
Length = 1136
Score = 105 bits (262), Expect = 5e-24
Identities = 50/119 (42%), Positives = 76/119 (63%)
Frame = +2
Query: 8 SYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARE 67
S E GEE +S + + +R EQ+K+LE FE +LEP +K+QLAR
Sbjct: 323 SSGIELGEEANIPEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARA 502
Query: 68 LGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
L LQPRQVAIWFQN+RARWK+KQLE++Y+ L+ Y+ + ++++ + Q L ++L++
Sbjct: 503 LNLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQYDAIKLDNDALQAQNQKLQAEILAL 679
>TC85738 similar to GP|6091551|gb|AAF01764.2| homeodomain-leucine zipper
protein 56 {Glycine max}, partial (77%)
Length = 2144
Score = 105 bits (262), Expect = 5e-24
Identities = 47/88 (53%), Positives = 71/88 (80%)
Frame = +3
Query: 36 KRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREY 95
+R + +Q+K+LE FE E +LEP +K++LA+ELGLQPRQVA+WFQN+RARWK+KQLER+Y
Sbjct: 1056 RRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDY 1235
Query: 96 NKLQNSYNNLASKFESMKKERQTLLIQV 123
L+ +Y+ L E ++++++TLL +V
Sbjct: 1236 GVLKANYDALKLNCEDLQRDKETLLKEV 1319
>TC77076 similar to PIR|T07734|T07734 homeotic protein VAHOX1 - tomato,
partial (43%)
Length = 1664
Score = 104 bits (260), Expect = 8e-24
Identities = 44/98 (44%), Positives = 75/98 (75%)
Frame = +1
Query: 31 KNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQ 90
+++ +R + +Q++ LE FE + +LEP +K +LA++LGLQPRQVAIWFQN+RARWK+KQ
Sbjct: 631 QSEKKRRLSVDQVQFLEKSFEEDNKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQ 810
Query: 91 LEREYNKLQNSYNNLASKFESMKKERQTLLIQVLSIVQ 128
LE++Y+ L + Y +L ++++++ KE+ L +V S+ +
Sbjct: 811 LEKDYDSLNDGYESLKTEYDNLLKEKDRLQSEVASLTE 924
>TC90396 similar to PIR|H96719|H96719 homeobox gene 13 protein 11736-10437
[imported] - Arabidopsis thaliana, partial (41%)
Length = 997
Score = 100 bits (250), Expect = 1e-22
Identities = 50/105 (47%), Positives = 71/105 (67%)
Frame = +1
Query: 15 EEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQ 74
E++ S M +KK KR + EQ+K+LE FE +LEP +K+QLA+ LGLQPRQ
Sbjct: 217 EDQLSDEEGYSQMGEKK----KRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQ 384
Query: 75 VAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTL 119
VAIWFQN+RARWK+KQLE+EY L+ +++L + ++K + L
Sbjct: 385 VAIWFQNRRARWKTKQLEKEYEVLKKQFDSLKADNNTLKAQNNKL 519
>TC86963 similar to GP|15148918|gb|AAK84886.1 homeodomain leucine zipper
protein HDZ2 {Phaseolus vulgaris}, partial (87%)
Length = 1519
Score = 100 bits (248), Expect = 2e-22
Identities = 46/91 (50%), Positives = 70/91 (76%)
Frame = +1
Query: 36 KRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREY 95
+R + EQ++ LE FE E +LEP +K+QLA+ELGLQPRQVAIWFQN+RAR+K+KQLE++Y
Sbjct: 739 RRLSSEQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDY 918
Query: 96 NKLQNSYNNLASKFESMKKERQTLLIQVLSI 126
L+ S+++L ++++ +E L +V S+
Sbjct: 919 GTLKASFDSLKDDYDNLLQENDKLKEEVNSL 1011
>TC85737 similar to GP|6091551|gb|AAF01764.2| homeodomain-leucine zipper
protein 56 {Glycine max}, partial (63%)
Length = 1622
Score = 99.0 bits (245), Expect = 5e-22
Identities = 50/113 (44%), Positives = 74/113 (65%)
Frame = +2
Query: 5 QYSSYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQL 64
++ S + EEE + KK+ R +Q+K+LE FE E +LEP +K +L
Sbjct: 482 EFQSMMLDGFEEEGCVEETGHHSEKKR-----RLRVDQVKALEKNFEVENKLEPERKEKL 646
Query: 65 ARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQ 117
A ELGLQPRQVA+WFQN+RARWK+KQLER+Y L+ +Y+ L KF+++ ++ +
Sbjct: 647 AIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKFDAIAQDNK 805
>TC91273 similar to GP|1435022|dbj|BAA05625.1 DNA-binding protein {Daucus
carota}, partial (33%)
Length = 722
Score = 97.1 bits (240), Expect = 2e-21
Identities = 46/98 (46%), Positives = 64/98 (64%)
Frame = +1
Query: 8 SYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARE 67
S+S EE +S + + +R EQ+K+LE FE +LEP +K+QLAR
Sbjct: 424 SFSGIELGEEANVEEELSDDGSQLGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARA 603
Query: 68 LGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNL 105
LGLQPRQ+AIWFQN+RARWK+KQLE++Y+ L Y+ +
Sbjct: 604 LGLQPRQIAIWFQNRRARWKTKQLEKDYDVLXRQYDTI 717
>TC79846 similar to GP|8843728|dbj|BAA97276.1 homeodomain transcription
factor-like {Arabidopsis thaliana}, partial (42%)
Length = 679
Score = 84.0 bits (206), Expect = 2e-17
Identities = 48/110 (43%), Positives = 66/110 (59%), Gaps = 10/110 (9%)
Frame = +2
Query: 5 QYSSYSAEAGEEETYTTSSISSMRKKKNK---------NTKR-FTDEQIKSLETMFETET 54
+Y+ ++ GE++ R KKNK N KR +DEQ+ LE F E
Sbjct: 155 EYTQIISQQGEKKPKPRRK----RSKKNKGGENSANDMNKKRKLSDEQVNILEENFGNEH 322
Query: 55 RLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNN 104
+LE KK +LA ELGL PRQVA+WFQN+RARWK+K+LE EY L+ ++ +
Sbjct: 323 KLESEKKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYFSLKKNHES 472
>AW776579 similar to GP|15148918|gb| homeodomain leucine zipper protein HDZ2
{Phaseolus vulgaris}, partial (21%)
Length = 667
Score = 73.6 bits (179), Expect = 2e-14
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = +1
Query: 1 MEYSQYSSYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRK 60
ME S + A EE + ++ +R T+EQ+ LE+ FE E +LEP +
Sbjct: 415 MEVKSSSFFQASEKEENNDDDDENYEVCLQQPGKKRRLTNEQVHFLESNFEIENKLEPER 594
Query: 61 KLQLARELGLQPRQVAIWFQNKRA 84
K+QLA+EL LQPRQVAIWFQN+RA
Sbjct: 595 KVQLAKELSLQPRQVAIWFQNRRA 666
>TC88711 similar to PIR|T07614|T07614 homeobox-leucine zipper protein
homolog h1 - soybean, partial (73%)
Length = 1238
Score = 71.2 bits (173), Expect = 1e-13
Identities = 38/89 (42%), Positives = 53/89 (58%)
Frame = +1
Query: 37 RFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYN 96
R + +Q LE F+ L P++KL LA++LGL+PRQV +WFQN+RAR K KQ E +
Sbjct: 511 RLSKDQSAILEETFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCE 690
Query: 97 KLQNSYNNLASKFESMKKERQTLLIQVLS 125
L+ NL + ++KE Q L LS
Sbjct: 691 VLKRCCENLTEENRRLQKEVQELRALKLS 777
>TC86390 similar to PIR|T52371|T52371 homeobox protein HAT9 [imported] -
Arabidopsis thaliana, partial (58%)
Length = 1288
Score = 70.1 bits (170), Expect = 2e-13
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Frame = +2
Query: 16 EETYTTSSISSMRKKKNKNTK--RFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPR 73
EE +S +S + K R T EQ LE F+ + L P++K LAR+L L+PR
Sbjct: 551 EEERVSSRVSDEDEDATNARKKLRLTKEQSLLLEESFKLHSTLNPKQKQALARQLNLRPR 730
Query: 74 QVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTL 119
QV +WFQN+RAR K KQ E + L+ L + +KKE Q L
Sbjct: 731 QVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQEL 868
>TC87859 similar to SP|P46604|HT22_ARATH Homeobox-leucine zipper protein
HAT22 (HD-ZIP protein 22). [Mouse-ear cress]
{Arabidopsis thaliana}, partial (48%)
Length = 1109
Score = 68.6 bits (166), Expect = 7e-13
Identities = 43/119 (36%), Positives = 62/119 (51%)
Frame = +2
Query: 1 MEYSQYSSYSAEAGEEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRK 60
ME ++ S+ +E+ ++ RKK R T +Q LE F+ + L P++
Sbjct: 356 METTEMERVSSRISDEDE---DGATAARKKL-----RLTKDQSAMLEESFKEHSTLNPKQ 511
Query: 61 KLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTL 119
K LAREL L PRQV +WFQN+RAR K KQ E + L+ L + ++KE Q L
Sbjct: 512 KQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLQKEVQEL 688
>BM813592 similar to GP|20161555|db putative homeodomain-leucine zipper
{Oryza sativa (japonica cultivar-group)}, partial (42%)
Length = 683
Score = 65.1 bits (157), Expect = 7e-12
Identities = 40/105 (38%), Positives = 58/105 (55%)
Frame = +2
Query: 15 EEETYTTSSISSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQ 74
EEE ++ + + RKK R T EQ LE F L P++K LA +L L+PRQ
Sbjct: 140 EEEEESSVNGDTPRKKL-----RLTKEQSHLLEESFRKNHTLNPKQKECLAMQLKLRPRQ 304
Query: 75 VAIWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTL 119
V +WFQN+RAR K KQ E E L+ + +L + +++E + L
Sbjct: 305 VEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEEL 439
>TC84739 homologue to PIR|T52367|T52367 homeobox protein HAT14 [imported] -
Arabidopsis thaliana (fragment), partial (70%)
Length = 737
Score = 60.5 bits (145), Expect = 2e-10
Identities = 32/79 (40%), Positives = 47/79 (58%), Gaps = 3/79 (3%)
Frame = +1
Query: 33 KNTK---RFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSK 89
+NT+ R + +Q LE F+ L P++KL LA++L L+PRQV +WFQN+RAR K K
Sbjct: 64 RNTRKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLK 243
Query: 90 QLEREYNKLQNSYNNLASK 108
Q E + L+ L +
Sbjct: 244 QTEVDCEYLKRCCETLTEE 300
>BQ141208 similar to PIR|S71477|S71 homeotic protein ovule-specific -
Phalaenopsis sp., partial (19%)
Length = 661
Score = 56.2 bits (134), Expect = 3e-09
Identities = 26/71 (36%), Positives = 44/71 (61%)
Frame = +3
Query: 29 KKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKS 88
+ K K R T QI+ +E+ F+ + +++ +L+RELGL+P QV WFQNKR + K+
Sbjct: 126 RPKRKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKT 305
Query: 89 KQLEREYNKLQ 99
+ E ++L+
Sbjct: 306 QHERSENSQLR 338
>TC88555 similar to PIR|T07614|T07614 homeobox-leucine zipper protein
homolog h1 - soybean, partial (47%)
Length = 704
Score = 54.3 bits (129), Expect = 1e-08
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = +3
Query: 37 RFTDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRAR 85
R T +Q LE F+ L P++KL LA++LGL+ RQV +WFQN+RAR
Sbjct: 555 RLTKDQSIILEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRAR 701
>BG584873 similar to GP|20161555|dbj putative homeodomain-leucine zipper
{Oryza sativa (japonica cultivar-group)}, partial (31%)
Length = 737
Score = 53.5 bits (127), Expect = 2e-08
Identities = 36/103 (34%), Positives = 53/103 (50%), Gaps = 8/103 (7%)
Frame = +1
Query: 25 SSMRKKKNKNTKRFTDEQIKSLETMFETETRLEPRKKLQL--------ARELGLQPRQVA 76
SS KK + N +E + E + PRKKL+L A +L L+PRQV
Sbjct: 172 SSSVKKLDVNRVTIEEEWMALEEEEESSVNGDTPRKKLRLTKKQKECLAMQLKLRPRQVE 351
Query: 77 IWFQNKRARWKSKQLEREYNKLQNSYNNLASKFESMKKERQTL 119
+WFQN+RAR K KQ E E L+ + +L + +++E + L
Sbjct: 352 VWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEEL 480
>BG647110 homologue to PIR|T10695|T10 transcription factor HD-zip -
Arabidopsis thaliana, partial (16%)
Length = 844
Score = 47.4 bits (111), Expect = 2e-06
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Frame = +1
Query: 37 RFTDEQIKSLETMFETETRLEPRKKLQLARELGL----QPRQVAIWFQNKRARWKSKQLE 92
R+T EQ+++LE ++ + ++ QL RE + +P+Q+ +WFQN+R R K +
Sbjct: 157 RYTPEQVEALERLYHECPKPTSLRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQR--- 327
Query: 93 REYNKLQNSYNNLASKFESMKKERQTLLIQVLSIV 127
+E +LQ L + + + +E L QV +V
Sbjct: 328 KEAGRLQAVNRKLTAMNKLLMEENDRLQKQVSHLV 432
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.310 0.123 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,961,396
Number of Sequences: 36976
Number of extensions: 29010
Number of successful extensions: 247
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of query: 129
length of database: 9,014,727
effective HSP length: 85
effective length of query: 44
effective length of database: 5,871,767
effective search space: 258357748
effective search space used: 258357748
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)
Medicago: description of AC144592.7