BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144538.7 + phase: 1 /pseudo
(632 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86894 similar to GP|15795138|dbj|BAB02516. gb|AAF35955.1~gene_... 1251 0.0
TC85621 similar to PIR|C96597|C96597 Rubisco subunit binding-pro... 396 e-110
TC86904 similar to GP|11908126|gb|AAG41492.1 unknown protein {Ar... 313 2e-85
TC88904 similar to GP|11994550|dbj|BAB02737. gene_id:MGD8.17~unk... 294 6e-80
TC77147 similar to GP|21703124|gb|AAM74503.1 AT3g13460/MRP15_10 ... 271 7e-73
TC89376 similar to GP|11908126|gb|AAG41492.1 unknown protein {Ar... 231 5e-61
TC82352 similar to GP|20161111|dbj|BAB90041. contains ESTs C7282... 157 9e-39
TC80498 similar to GP|18087662|gb|AAL58954.1 putative RNA-bindin... 119 4e-27
BQ135547 similar to GP|15912287|gb| AT5g61020/maf19_20 {Arabidop... 64 3e-14
TC89571 similar to GP|18087662|gb|AAL58954.1 putative RNA-bindin... 76 3e-14
TC81204 similar to GP|8778514|gb|AAF79522.1| F21D18.17 {Arabidop... 64 2e-10
TC88437 similar to GP|1621463|gb|AAB17192.1| laccase {Liriodendr... 39 0.006
BG644345 weakly similar to GP|19697333|gb putative protein poten... 39 0.006
BG648462 weakly similar to GP|14253163|em VMP4 protein {Volvox c... 36 0.051
TC89394 similar to GP|14517410|gb|AAK62595.1 At1g30970/F17F8_14 ... 36 0.051
TC76562 similar to PIR|T11622|T11622 extensin class 1 precursor ... 36 0.051
TC86766 weakly similar to PIR|T06291|T06291 extensin homolog T9E... 35 0.11
TC88879 weakly similar to PIR|T04011|T04011 hypothetical protein... 34 0.19
TC76916 MtN4 33 0.33
TC89233 homologue to GP|18734|emb|CAA36734.1|| DNA-directed RNA ... 33 0.33
>TC86894 similar to GP|15795138|dbj|BAB02516.
gb|AAF35955.1~gene_id:MGH6.21~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (43%)
Length = 2353
Score = 1251 bits (3237), Expect = 0.0
Identities = 609/609 (100%), Positives = 609/609 (100%)
Frame = +2
Query: 24 GTTTIGHSRDITSQSGSFGSGADQPLYPPNVYAPQAQAFYYGGFDNGNGEWDEYPSYVNN 83
GTTTIGHSRDITSQSGSFGSGADQPLYPPNVYAPQAQAFYYGGFDNGNGEWDEYPSYVNN
Sbjct: 245 GTTTIGHSRDITSQSGSFGSGADQPLYPPNVYAPQAQAFYYGGFDNGNGEWDEYPSYVNN 424
Query: 84 GGIEIGSPGVYNENQSLVFHSGYGFNPQMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTP 143
GGIEIGSPGVYNENQSLVFHSGYGFNPQMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTP
Sbjct: 425 GGIEIGSPGVYNENQSLVFHSGYGFNPQMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTP 604
Query: 144 PYYNQLVPPPNLPYLNSPTPVSQPELTNLLGIDQQVESNFFGPRASYPSVGSFARGSFPV 203
PYYNQLVPPPNLPYLNSPTPVSQPELTNLLGIDQQVESNFFGPRASYPSVGSFARGSFPV
Sbjct: 605 PYYNQLVPPPNLPYLNSPTPVSQPELTNLLGIDQQVESNFFGPRASYPSVGSFARGSFPV 784
Query: 204 APGSFSFHESQQGFDGSRSGGLWSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGM 263
APGSFSFHESQQGFDGSRSGGLWSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGM
Sbjct: 785 APGSFSFHESQQGFDGSRSGGLWSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGM 964
Query: 264 ASHQQRSLYGFGSSSNPYGRGYLSNPGSSFGGSAISGLSANDRSFLSLENSRRHGRETAS 323
ASHQQRSLYGFGSSSNPYGRGYLSNPGSSFGGSAISGLSANDRSFLSLENSRRHGRETAS
Sbjct: 965 ASHQQRSLYGFGSSSNPYGRGYLSNPGSSFGGSAISGLSANDRSFLSLENSRRHGRETAS 1144
Query: 324 FCRCNGTLDILSEQNRGPRASKLKNHISSENNAIDGSKNNASTAKFQDESLNRPDFATDF 383
FCRCNGTLDILSEQNRGPRASKLKNHISSENNAIDGSKNNASTAKFQDESLNRPDFATDF
Sbjct: 1145FCRCNGTLDILSEQNRGPRASKLKNHISSENNAIDGSKNNASTAKFQDESLNRPDFATDF 1324
Query: 384 KDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYCQAKEKQDACRIFLFFSVNAS 443
KDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYCQAKEKQDACRIFLFFSVNAS
Sbjct: 1325KDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYCQAKEKQDACRIFLFFSVNAS 1504
Query: 444 AQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVT 503
AQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVT
Sbjct: 1505AQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVT 1684
Query: 504 NSRDTQEVKLQQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQERKARQQSSIMPTGLV 563
NSRDTQEVKLQQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQERKARQQSSIMPTGLV
Sbjct: 1685NSRDTQEVKLQQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQERKARQQSSIMPTGLV 1864
Query: 564 GGSEHRSSSDSTGDFIKQVSKNFSLVVRLDDNNNEVIAANRDKLASDVPTGNVFKPGEGI 623
GGSEHRSSSDSTGDFIKQVSKNFSLVVRLDDNNNEVIAANRDKLASDVPTGNVFKPGEGI
Sbjct: 1865GGSEHRSSSDSTGDFIKQVSKNFSLVVRLDDNNNEVIAANRDKLASDVPTGNVFKPGEGI 2044
Query: 624 LVTASSMQT 632
LVTASSMQT
Sbjct: 2045LVTASSMQT 2071
>TC85621 similar to PIR|C96597|C96597 Rubisco subunit binding-protein beta
subunit [imported] - Arabidopsis thaliana, partial (51%)
Length = 2960
Score = 396 bits (1018), Expect = e-110
Identities = 242/581 (41%), Positives = 332/581 (56%), Gaps = 38/581 (6%)
Frame = +1
Query: 12 IPESSKFSNSSQGTTTIGHSRDITSQSGSFGSGADQPLYPPNVYAPQAQ-AFYYGGFDNG 70
IPE +K + +Q + + I S S + P Y P ++YYGG+D
Sbjct: 319 IPEPNKKATGNQYDSGNALNGQIPSYERSVTPVLQDFMDPAMCYLPNGYPSYYYGGYDGT 498
Query: 71 NGEWDEYPSYVNNGGIEIGSPGVYNEN-QSLVFHSGYGFNPQMPYGPYSPVTSPLPSVGG 129
EW+ Y+N G+++ S GVY +N SLV+H GYG+ PY PYSP SP+P++G
Sbjct: 499 GSEWE----YLNADGVDLTS-GVYGDNGSSLVYHHGYGY---APYAPYSPAGSPVPTMGN 654
Query: 130 DAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPVSQPELTNLLGI--DQQ---VESNFF 184
D QLY PQ + Y PP++ L P P+ +PT + P+ N + DQ+ VE+
Sbjct: 655 DGQLYGPQHYQY-PPFFQPLTPTSG-PF--TPTSAAHPQGDNSTSVAADQKPLSVEAANG 822
Query: 185 GPRASYPSVGSFARGSFPVAPGSFSFHESQQGFDGSRSGGLWSDSSKPSERQRSFMPLSP 244
A V A+G P + G + + + GFDG+RS LW D+ S+ Q P+S
Sbjct: 823 NTNAGTNGVN--AKGRTPTSGG---YQDPRYGFDGARSPNLWLDTPIFSDGQPR--PVSS 981
Query: 245 SVPQQPIGSV--------RSFGPSAG-MASHQQRSLYGFGSSSNPYGRGYLSNPGSSFGG 295
+V I S +++ P++ M H R + G++ R Y + +G
Sbjct: 982 TVISSSISSGNNGTASRNQTYRPNSQYMGLHHPRPIPAMGATPGFINRMYPNTRYGQYGN 1161
Query: 296 SAISGLS---------ANDRSFLSLENS-RRHGRETASFCRCNGTLDILSEQNRGPRASK 345
S SG+ N R++L+++N + GR F N D L+E NRGPRA
Sbjct: 1162SVRSGMGYGTHGYDSRTNGRAWLAVDNKYKTRGRNGGYFGYGNENTDGLNELNRGPRAKG 1341
Query: 346 LKNH---------ISSEN---NAIDGSKNNASTAKFQDESLNRPDFATDFKDAKFFVIKS 393
KN + +N N +D K ST + E N+ DF ++ DAKFFVIKS
Sbjct: 1342GKNQKVFVPTVLTVKGQNVPVNTVDEEKEKNSTTPDR-EQYNKADFPEEYTDAKFFVIKS 1518
Query: 394 YSEDNVHKSIKYGVWASTPNGNRKLDAAYCQAKEKQDACRIFLFFSVNASAQFCGVAEMV 453
YSED++HKSIKY VWAST NGN+KLDAAY +A++K C IFL FSVN S QF G+AEM
Sbjct: 1519YSEDDIHKSIKYNVWASTQNGNKKLDAAYQEAQQKSGGCPIFLLFSVNTSGQFVGLAEMT 1698
Query: 454 GPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKL 513
GPV+F+KS+++WQQDKW G FP+KWHI+KDVPN+ RHI LENN+NKPVTNSRDTQE+ L
Sbjct: 1699GPVDFNKSLEYWQQDKWMGCFPLKWHIVKDVPNNVLRHITLENNENKPVTNSRDTQEIML 1878
Query: 514 QQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQERKARQQ 554
+ G+++L IFK Y + T ILDDF FYE RQK + E+KA+QQ
Sbjct: 1879EPGLKLLKIFKEYSSKTCILDDFGFYEGRQKTILEKKAKQQ 2001
>TC86904 similar to GP|11908126|gb|AAG41492.1 unknown protein {Arabidopsis
thaliana}, partial (42%)
Length = 2062
Score = 313 bits (801), Expect = 2e-85
Identities = 222/568 (39%), Positives = 284/568 (49%), Gaps = 29/568 (5%)
Frame = +3
Query: 15 SSKFSNSSQGTTTIGHSRDITSQ----SGSFGSG--------ADQPL-YPPNVYAPQAQA 61
+S +S G ++ +R S SGSF G ADQ + Y Y
Sbjct: 39 NSNMVSSKGGGSSPSDARSCVSSIGDASGSFKEGDVDHEFQSADQNVAYSAGSY----YG 206
Query: 62 FYYGGFDNGNGEWDEYPSYVNNGGIEIGSPGVYNENQSLVF-HSGYGFNPQMPYGPYSPV 120
+YY G+ GE + YV ++ P + +N S V+ GY Q Y Y PV
Sbjct: 207 YYYPGYGGFYGEQENQGYYVGADAMDFQYPVMQADNGSYVYLMPGY----QTGYSSYFPV 374
Query: 121 TSPLPSVGGDAQLYSP----QQFPYTPPY---YNQLVPPPNLPYLNSPTPVSQPELTNLL 173
+P V Q+Y P QQ +P Y Y +L+P S + L
Sbjct: 375 NTP--GVDVQYQVYPPGSVFQQPIGSPGYISPYGELLP-------------STYSWDSSL 509
Query: 174 GIDQQVESNFFGPRASYPSVGSFARGSFPVAPGSFSFHESQQGFDGSR----SGGLWSDS 229
+ N + AS PS S G S S S + S
Sbjct: 510 TTQDVAQGNRYNELASKPSGRSIFSSQSRTGSGIVSKSVPSSNVSNSSEVKGSPPILDVS 689
Query: 230 SKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGMASHQQRSLYGFGSSSNPYGRGYLSNP 289
S +R + S+ P+ + S G + S Y G S PY + +
Sbjct: 690 STHVKRNQPKQANKASI-SGPV--LHSDAMPKGSFPVAKFSAYNQGKSGFPYQNNFPNMK 860
Query: 290 GSSFGGSAISGLSANDRSFLSLENSRRHGRETASFCRCNGTLDILSEQNRGPRASKLKNH 349
+S G ++S E + + D L+EQN+GPR + K
Sbjct: 861 ATSTKG------------WVSTEKLKLRSKVN----------DSLNEQNQGPRTANAKGT 974
Query: 350 ISSENNAIDGSKNNASTAKFQDESLNRPDFATDFKDAKFFVIKSYSEDNVHKSIKYGVWA 409
++S N+ D S N K + + N PDF T + A FFVIKSYSED+VHKSIKY VWA
Sbjct: 975 LNSGGNSEDKSVNG--NTKIRTDQYNLPDFPTKYDHALFFVIKSYSEDDVHKSIKYDVWA 1148
Query: 410 STPNGNRKLDAAYCQAK----EKQDACRIFLFFSVNASAQFCGVAEMVGPVNFDKSVDFW 465
STPNGN++LD A+ A+ EK C +FLFFSVNAS QFCGVAEM+G V+F+KS+DFW
Sbjct: 1149STPNGNKRLDNAFQDAQNRMEEKGSKCPVFLFFSVNASGQFCGVAEMIGRVDFNKSMDFW 1328
Query: 466 QQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLQQGIEMLTIFKN 525
QQDKW+G FPVKWHIIKD+PN Q RHI+LENND+KPVTNSRDTQE+ QGIEML IFKN
Sbjct: 1329QQDKWNGYFPVKWHIIKDIPNPQLRHIILENNDHKPVTNSRDTQEIHFPQGIEMLNIFKN 1508
Query: 526 YETDTSILDDFDFYEDRQKAMQERKARQ 553
Y + TSILDDFDFYE RQK MQE+K RQ
Sbjct: 1509YVSRTSILDDFDFYESRQKVMQEKKIRQ 1592
>TC88904 similar to GP|11994550|dbj|BAB02737. gene_id:MGD8.17~unknown
protein {Arabidopsis thaliana}, partial (12%)
Length = 1431
Score = 294 bits (753), Expect = 6e-80
Identities = 170/354 (48%), Positives = 211/354 (59%), Gaps = 21/354 (5%)
Frame = +1
Query: 220 SRSGGLWSDSSKPSERQRSFMPLSPSVPQQPI--------GSVRSFG--PSAGMASHQQR 269
S S +SSKPS Q S P P+ GSV + G A SH R
Sbjct: 151 SASAAFTRNSSKPSSNQTSSFLRVPEGPRANALAKKDSTNGSVPNSGFLNFASSPSHLAR 330
Query: 270 SLYGFGSSSNPYGRGYLSNPGSSF-------GGSAISGLSANDRSFLSLENSRRHGRETA 322
S S + + G + + F G + G +AN +S ++ + H
Sbjct: 331 SADVSFQSVDTFSNGNVLPHRNQFKVAAPLSNGFSDYGSNANGQSAIAKLRPKVH----V 498
Query: 323 SFCRCNGTLDILSEQNRGPRASKLKNHISSENNAIDGSKNNASTAKFQDESLNRPDFATD 382
+ N + +L EQNRGPR S+ K+H+ + N + NR DF D
Sbjct: 499 APIDVNRSGVLLGEQNRGPRISRPKHHLPIKAYTAKSGDANTQENIIYTDQYNREDFPID 678
Query: 383 FKDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYCQAKEK----QDACRIFLFF 438
+ AKFFVIKSYSED+VHKSIKY VW+STP+GN+KL +AY A+ K C IFLFF
Sbjct: 679 NEIAKFFVIKSYSEDDVHKSIKYNVWSSTPHGNKKLQSAYEDARRKATGKSGGCPIFLFF 858
Query: 439 SVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENND 498
SVNAS QFCGVAEMVGPV+F+K +DFWQQDKWSG FPVKWHIIKDVPN FRHI+LENN+
Sbjct: 859 SVNASGQFCGVAEMVGPVDFNKDMDFWQQDKWSGSFPVKWHIIKDVPNGNFRHIILENNE 1038
Query: 499 NKPVTNSRDTQEVKLQQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQERKAR 552
KPVTNSRDTQE+ ++G+EML IFKNY TS+LDDF +YE+RQK MQE K +
Sbjct: 1039FKPVTNSRDTQEIMYRKGLEMLKIFKNYTLKTSLLDDFIYYENRQKVMQEEKTK 1200
>TC77147 similar to GP|21703124|gb|AAM74503.1 AT3g13460/MRP15_10 {Arabidopsis
thaliana}, partial (32%)
Length = 2310
Score = 271 bits (692), Expect = 7e-73
Identities = 152/302 (50%), Positives = 191/302 (62%), Gaps = 18/302 (5%)
Frame = +3
Query: 271 LYGFGSSSNPYGRGYLSNPGSSFGGSAISGLSANDRSFLSLENSRRHGRE--TASFCRCN 328
L GF + P S GSSF ++ G SA S +N R A+ R N
Sbjct: 1008 LPGFMNGMYP-SNNLFSQYGSSFRANSRYGSSAYGSRTGSFDNKYRATGNGYVANDSRRN 1184
Query: 329 GTLDILSEQNRGPRASKLKNHISSENNAIDGSKNNASTAKFQD----------------E 372
G D SE N+GPRA+K SS+N ++ + K Q+ E
Sbjct: 1185 G--DGFSELNKGPRAAK-----SSDNKSVKSPEPVTLLLKGQNLPVKSDDEVVPLVLNKE 1343
Query: 373 SLNRPDFATDFKDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYCQAKEKQDAC 432
N D + ++ DAKFF+IKSYSED+VHKSIKY VWASTPNGN+KLDAAY +A C
Sbjct: 1344 QYNGEDLSENYSDAKFFIIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEA----GGC 1511
Query: 433 RIFLFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHI 492
IFL FSVN S QF G+AEM GPV+FDK+V++WQQD+W+G F VKWHIIKD+PN RHI
Sbjct: 1512 PIFLLFSVNTSGQFVGLAEMTGPVDFDKTVEYWQQDRWTGCFNVKWHIIKDIPNGVLRHI 1691
Query: 493 VLENNDNKPVTNSRDTQEVKLQQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQERKAR 552
LENN+NKPVTNSRDTQEVK ++G++++ IFK + + TSILDDF FYE R+K QERK +
Sbjct: 1692 TLENNENKPVTNSRDTQEVKFEKGVQIVKIFKEHASKTSILDDFGFYESREKTTQERKFK 1871
Query: 553 QQ 554
+Q
Sbjct: 1872 EQ 1877
Score = 89.4 bits (220), Expect = 4e-18
Identities = 60/183 (32%), Positives = 87/183 (46%), Gaps = 15/183 (8%)
Frame = +2
Query: 10 PSIPESSK--------FSNSSQGTTTIGHSRDITSQSGSFGSGA----DQPLYPPNVYAP 57
PS+ SS+ S SQ T +G + + F +GA +P P Y P
Sbjct: 89 PSVAPSSEQAASLLQNLSLDSQPKTIVGDAEPVKKNGPVFANGAAKGTGKPFNPNPSYVP 268
Query: 58 QA--QAFYYGGFDNGNGEWDEYPSYVN-NGGIEIGSPGVYNENQSLVFHSGYGFNPQMPY 114
+YYGG+D G G+W Y +YVN +GG+ + GVY +N S ++H GYG+ P Y
Sbjct: 269 NGYPSTYYYGGYD-GQGDWSGYSNYVNLDGGM---TQGVYGDNCSYMYHQGYGYTP---Y 427
Query: 115 GPYSPVTSPLPSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPVSQPELTNLLG 174
G Y+ S P V D Q+Y QQ+ Y YYN + + T V Q E++ +
Sbjct: 428 GAYASPNSSSPVVQHDGQMYGLQQYQYPCSYYNSPTSADG-SFAPNKTSVPQREMSTAVN 604
Query: 175 IDQ 177
D+
Sbjct: 605 ADR 613
>TC89376 similar to GP|11908126|gb|AAG41492.1 unknown protein {Arabidopsis
thaliana}, partial (31%)
Length = 1043
Score = 231 bits (590), Expect = 5e-61
Identities = 108/183 (59%), Positives = 142/183 (77%), Gaps = 4/183 (2%)
Frame = +1
Query: 372 ESLNRPDFATDFKDAKFFVIKSYSEDNVHKSIKYGVWASTPNGNRKLDAAYCQAKEKQDA 431
+ N PDF T ++ AKF++IKS++ED++HK IKY VW STP+GN+KL+AA+ A+ K
Sbjct: 58 DQYNLPDFQTKYETAKFYMIKSFNEDDIHKGIKYDVWTSTPHGNKKLNAAFQNAEAKLSQ 237
Query: 432 ----CRIFLFFSVNASAQFCGVAEMVGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNS 487
C IFLFFSVNAS QF GVAEM+GPV+F K + FW+ DK++G FP+KWHIIKDVPN
Sbjct: 238 TGTQCPIFLFFSVNASGQFVGVAEMLGPVDFKKDMKFWKLDKYNGFFPIKWHIIKDVPNR 417
Query: 488 QFRHIVLENNDNKPVTNSRDTQEVKLQQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQ 547
QF HI L+ N+NK VT SRDTQE+ L++G+EML IFK+Y TS+LDDFDFYE+R+K +
Sbjct: 418 QFAHITLQINENKCVTFSRDTQEITLKEGLEMLKIFKSYPAKTSLLDDFDFYENREKLCR 597
Query: 548 ERK 550
++
Sbjct: 598 SQR 606
>TC82352 similar to GP|20161111|dbj|BAB90041. contains ESTs C72821(E2325)
AU085902(E2325)~similar to Arabidopsis thaliana protein
YUP8H12R.13~, partial (15%)
Length = 1096
Score = 157 bits (398), Expect = 9e-39
Identities = 68/100 (68%), Positives = 85/100 (85%)
Frame = +2
Query: 453 VGPVNFDKSVDFWQQDKWSGQFPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVK 512
+G V+F+K +DFWQQDKWSG FPVKWHIIKDVPN FRHI+L+NN+NKPVTNSRDTQE+
Sbjct: 2 IGSVDFNKDMDFWQQDKWSGSFPVKWHIIKDVPNPNFRHIILDNNENKPVTNSRDTQEIM 181
Query: 513 LQQGIEMLTIFKNYETDTSILDDFDFYEDRQKAMQERKAR 552
+G+EML IFKN+ TS+LDDF +YE+RQK M ++KA+
Sbjct: 182 YSKGLEMLKIFKNHTLKTSLLDDFMYYENRQKIMHDQKAK 301
>TC80498 similar to GP|18087662|gb|AAL58954.1 putative RNA-binding protein
{Oryza sativa}, partial (12%)
Length = 722
Score = 119 bits (298), Expect = 4e-27
Identities = 54/83 (65%), Positives = 68/83 (81%)
Frame = +1
Query: 474 FPVKWHIIKDVPNSQFRHIVLENNDNKPVTNSRDTQEVKLQQGIEMLTIFKNYETDTSIL 533
F VKW IIKD+PN+ RHI LENN+NKPVTNSRDTQEVK ++G+E+L IFK + + T IL
Sbjct: 4 FSVKWRIIKDIPNNVLRHITLENNENKPVTNSRDTQEVKFEKGVEILKIFKEHSSKTCIL 183
Query: 534 DDFDFYEDRQKAMQERKARQQSS 556
DDF FYE R+K +QE+KA++Q S
Sbjct: 184 DDFAFYEAREKTIQEKKAKEQLS 252
>BQ135547 similar to GP|15912287|gb| AT5g61020/maf19_20 {Arabidopsis
thaliana}, partial (9%)
Length = 761
Score = 63.9 bits (154), Expect(2) = 3e-14
Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Frame = +3
Query: 407 VWASTPNGNRKLDAAYCQAKEKQDACRIFLFFSVNAS-AQFCGVAEMVGPVNFDKSVDFW 465
V+A+T NGN LD AY QA+ K IFL FSVN + G+ EM GP +F+KS
Sbjct: 9 VFANTQNGNNNLDTAYQQAQRKSGGSPIFLLFSVNTTRTMLGGLTEMTGPDDFNKSAGVL 188
Query: 466 Q--QDKWSGQFPVKWHIIKDVPNS 487
W+ P+ WHI+ DVP +
Sbjct: 189 ST*HSGWA-CLPLMWHIVNDVPKN 257
Score = 32.7 bits (73), Expect(2) = 3e-14
Identities = 14/17 (82%), Positives = 15/17 (87%)
Frame = +1
Query: 490 RHIVLENNDNKPVTNSR 506
RHI LENNDNKPVT S+
Sbjct: 265 RHITLENNDNKPVTISQ 315
>TC89571 similar to GP|18087662|gb|AAL58954.1 putative RNA-binding protein
{Oryza sativa}, partial (5%)
Length = 1097
Score = 76.3 bits (186), Expect = 3e-14
Identities = 85/326 (26%), Positives = 136/326 (41%), Gaps = 42/326 (12%)
Frame = +3
Query: 11 SIPESSKFSNSSQGTTT-IGHSRDITSQSGSFGSGADQPLYPPNVYAPQAQ--------- 60
S P+++K ++ Q + R I + +G Q P + P A
Sbjct: 51 SSPDTTKAADLMQNLSLDSAEPRTIAVPEPAKKAGHGQANEVPKTFNPNASYVPNGHPSI 230
Query: 61 AFYYGGFDNGNGEWDE---YPSYVN-NGGIEIGSPGVYNENQSLVFHSGYGFNPQMPYGP 116
++YYGG+D G G+W++ Y +YVN NGG+ + GVY ++ S ++ GYG+ PYG
Sbjct: 231 SYYYGGYD-GQGDWNDWNVYQNYVNANGGM---AQGVYGDSGSYMYPQGYGYA---PYGS 389
Query: 117 YSPVTSPLPSVGGDAQLYSPQQFPYTPPY---------YNQLVPPPNLPYLNSPTPV--- 164
Y P S PS+ D +LY QQ+ Y Y Y N+ + TPV
Sbjct: 390 Y-PSPSTSPSLPHDDKLYGLQQYQYPSYYQPSASANGTYGATANKTNVHGGKTSTPVTAE 566
Query: 165 ----------SQPELTNLLGIDQQVESNFF--GPRASYPSVGSFA--RGSFPVAPGSFSF 210
S +TN + V ++ + A+Y V +A G+ P P
Sbjct: 567 HVPSSVMNKGSTTTMTNGYSSNNNVSNDSYQRAGYAAYAPVSGYAGTYGTQPSYPSDPLL 746
Query: 211 HESQQGFDGSRSGGLWSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGMASHQQRS 270
+Q +GS++G +S + P + S S S P ++ + G S
Sbjct: 747 FSDRQSKNGSKTG--YSTPAVPRKDFSSQRNSSLSQPLPQYSNLHGYSSGLGPYSGYPNG 920
Query: 271 LYGFGSSSNPYGRGY--LSNPGSSFG 294
+Y + + YG Y SN GS++G
Sbjct: 921 MYPSNTMYSQYGNTYRGRSNYGSTYG 998
>TC81204 similar to GP|8778514|gb|AAF79522.1| F21D18.17 {Arabidopsis
thaliana}, partial (13%)
Length = 1295
Score = 63.5 bits (153), Expect = 2e-10
Identities = 80/313 (25%), Positives = 130/313 (40%), Gaps = 7/313 (2%)
Frame = +3
Query: 46 DQPLYPPNVYAPQAQAFYYGGFDNGNGEWDEYPSYVNNGGIEIGSPGVYNENQSLVFHSG 105
DQ +Y P A +Y GF++ GEW++ G ++ G +E+ LV+++
Sbjct: 324 DQSMYYP---AATNYGYYCTGFESP-GEWEDQYRIFGVDGPDVQYMGGQDESFPLVYYNN 491
Query: 106 YGFNPQMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPVS 165
YG+ Q PY PY+P P +VG D Y Q YT P + N +P
Sbjct: 492 YGY-AQSPYNPYNPYI-PGAAVGVDGS-YGGGQSYYTLPNHQ-----------NPASPAY 629
Query: 166 QPELTNLLGIDQQVESNFFGPRASYP-SVGSFARGSFPVAPGSFSFHESQQGFDGSRSGG 224
P L L ++ FG AS S G + F A G+FS + + + S
Sbjct: 630 DP-LVQLDNFPDSSANSVFGASASVSRSDGRGLKQKFNEASGNFSRNSLILSTNQTSSVA 806
Query: 225 LWSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGMASHQQRSLYGFGSSSNPYGRG 284
+ S+ + + ++ + + RS +A A HQ R + G
Sbjct: 807 MVSEGPRANNGRKQ------DLTHANVSGSRSLN-AASSAVHQDRRTDASVQPVDTISNG 965
Query: 285 -YLSNPGSSFGGSAISGLS-----ANDRSFLSLENSRRHGRETASFCRCNGTLDILSEQN 338
+S+ S+ SG S AN +S ++ + G ++ N + D+L +QN
Sbjct: 966 NVISHHNQLIVASSRSGFSDFAANANGQSSVAKLRPKALGLGSSDG---NVSADVLGDQN 1136
Query: 339 RGPRASKLKNHIS 351
RGPR S+ K+ +S
Sbjct: 1137RGPRTSRSKHQLS 1175
>TC88437 similar to GP|1621463|gb|AAB17192.1| laccase {Liriodendron
tulipifera}, partial (41%)
Length = 984
Score = 38.9 bits (89), Expect = 0.006
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 11/126 (8%)
Frame = +1
Query: 2 FVIFLGLHPSIPESSKFSNSSQGTTTIGHSRDITSQSGSFGSG------ADQPLYPPNVY 55
FV+ H S+ KF T + H++ + + +G F D+ L +
Sbjct: 157 FVLATSQHGSVTRHYKFDIRLANVTRLCHTKSMVTVNGKFPGPRIVVREGDRLLVKVVNH 336
Query: 56 APQAQAFYYGGFDNGNGEWDEYPSYVNNGGIEIGSPGVYN-----ENQSLVFHSGYGFNP 110
P + ++ G W + PSY+ I+ G VYN + +L +H+ + +
Sbjct: 337 VPNNISLHWHGVRQLRSGWSDGPSYITQCPIQTGQSYVYNFTIVGQRGTLFWHAHFSWLR 516
Query: 111 QMPYGP 116
YGP
Sbjct: 517 ATVYGP 534
>BG644345 weakly similar to GP|19697333|gb putative protein potential
transcriptional repressor Not4hp - Mus musculus, partial
(7%)
Length = 635
Score = 38.9 bits (89), Expect = 0.006
Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Frame = +2
Query: 267 QQRSLYGFGSSSNPYGRGYLSN-------PGSSFG-GSAISGLSANDRSFLSLENSRRHG 318
Q RSL +S PY + SN PGSS S + G S + S L NSRRH
Sbjct: 116 QWRSLSLHRHNSRPYSKLRDSNRRLHSKLPGSSNHLHSKLQGSSKHRHSKLPASNSRRHS 295
Query: 319 RETASFCRCNGTLDILSEQNRGPR--ASKLKNHISSENNAIDGSKNNASTAKFQDESLNR 376
+ F N + S N ++ N+ S+ NN + NN + S N
Sbjct: 296 LRSLPFRNSNNNFNFSSNSNNNNNNFSNNNNNNFSNNNNCNCSNNNNNCCSNISHHSSNN 475
Query: 377 PDFA 380
F+
Sbjct: 476 CTFS 487
>BG648462 weakly similar to GP|14253163|em VMP4 protein {Volvox carteri f.
nagariensis}, partial (4%)
Length = 678
Score = 35.8 bits (81), Expect = 0.051
Identities = 36/127 (28%), Positives = 52/127 (40%)
Frame = +1
Query: 43 SGADQPLYPPNVYAPQAQAFYYGGFDNGNGEWDEYPSYVNNGGIEIGSPGVYNENQSLVF 102
SGA P PP Q+ F + NG+WD + GI P N+ Q++V
Sbjct: 160 SGAHGPSIPPPQQI-QSSPFTRPVYVPPNGQWDPH-------GINNQLP--VNQYQTVVM 309
Query: 103 HSGYGFNPQMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPT 162
+ + +P +P +PL + G P P YNQ +PP +P S
Sbjct: 310 PNNFNASPFIPVS-----VTPLAQIQGT---------PMQP--YNQQIPPSIVPPPLSSL 441
Query: 163 PVSQPEL 169
P QPE+
Sbjct: 442 PPPQPEM 462
>TC89394 similar to GP|14517410|gb|AAK62595.1 At1g30970/F17F8_14
{Arabidopsis thaliana}, partial (68%)
Length = 1627
Score = 35.8 bits (81), Expect = 0.051
Identities = 27/90 (30%), Positives = 31/90 (34%)
Frame = +3
Query: 110 PQMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPVSQPEL 169
PQ P P V PLPS T P + PP LP P PVSQP
Sbjct: 624 PQQPLFPVQNVRPPLPST--------------TSPALQSQITPPGLPSSTPPVPVSQPLF 761
Query: 170 TNLLGIDQQVESNFFGPRASYPSVGSFARG 199
+ +S+ F SV S G
Sbjct: 762 PVVGNNHMATQSSPFSAAPMSSSVPSITPG 851
>TC76562 similar to PIR|T11622|T11622 extensin class 1 precursor - cowpea,
partial (48%)
Length = 1391
Score = 35.8 bits (81), Expect = 0.051
Identities = 22/60 (36%), Positives = 26/60 (42%), Gaps = 8/60 (13%)
Frame = +2
Query: 112 MPYGPYSPVTSPLPSVGGDAQLY-----SPQQFPYTPPYYNQLVPPPNLP---YLNSPTP 163
+P+ PY + P PS Y P P+TP YY PP LP Y NSP P
Sbjct: 95 IPHTPYYYKSPPPPSPSPPPPYYYKSPPPPSPIPHTPYYYKSPPPPKVLPPPYYYNSPPP 274
Score = 29.6 bits (65), Expect = 3.7
Identities = 21/62 (33%), Positives = 23/62 (36%), Gaps = 9/62 (14%)
Frame = +2
Query: 113 PYGPYSPVTSPLPSVGGDAQLY-----SPQQFPYTPPYYNQLVPPPNLP----YLNSPTP 163
P PY + P PS Y P P+TP YY PP P Y SP P
Sbjct: 2 PPPPYYYKSPPPPSPSPPPPYYYKSPPPPSPIPHTPYYYKSPPPPSPSPPPPYYYKSPPP 181
Query: 164 VS 165
S
Sbjct: 182 PS 187
>TC86766 weakly similar to PIR|T06291|T06291 extensin homolog T9E8.80 -
Arabidopsis thaliana, partial (18%)
Length = 1260
Score = 34.7 bits (78), Expect = 0.11
Identities = 21/58 (36%), Positives = 23/58 (39%)
Frame = +2
Query: 110 PQMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPVSQP 167
P +PY SP P S P TPP Y L PPP P + P PV P
Sbjct: 95 PPVPYYYSSPPPPPAHSPPPPPXSPPPPPHSPTPPVYPYLSPPPPPPVHSPPPPVYSP 268
Score = 29.6 bits (65), Expect = 3.7
Identities = 19/57 (33%), Positives = 24/57 (41%)
Frame = +2
Query: 109 NPQMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPVS 165
+P P PY P P +YSP P +PP + PPP P + P P S
Sbjct: 185 SPTPPVYPYLSPPPPPPVHSPPPPVYSPP--PPSPPPCVEPPPPPPPPCVEPPPPSS 349
>TC88879 weakly similar to PIR|T04011|T04011 hypothetical protein T5L19.200
- Arabidopsis thaliana, partial (6%)
Length = 1573
Score = 33.9 bits (76), Expect = 0.19
Identities = 49/208 (23%), Positives = 72/208 (34%), Gaps = 15/208 (7%)
Frame = +3
Query: 111 QMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTPPY--------------YNQLVPPPNLP 156
Q PYG +S P A PQQ+ P Y + + P +P
Sbjct: 669 QYPYGGHSNPQPTYPQASAQANYAPPQQYGKPPLYGVPPSQGQHPQSYGHPRATQPGEIP 848
Query: 157 YLNSPTPVSQPELTNLLGIDQQVESNFFGP-RASYPSVGSFARGSFPVAPGSFSFHESQQ 215
Y PTP + + Q GP +A+YP+ GS P A G +S +S
Sbjct: 849 Y-QGPTPAQ-----SYGTVQQPYPYASSGPSQAAYPTY-----GSAPAADG-YSHPQSAP 992
Query: 216 GFDGSRSGGLWSDSSKPSERQRSFMPLSPSVPQQPIGSVRSFGPSAGMASHQQRSLYGFG 275
G ++ GG +PS Q Q + S GP+ + + Y
Sbjct: 993 GQVYAQPGG------QPSYGQPG---------AQAVASYAQVGPTGYGSYPSSQQTYPEQ 1127
Query: 276 SSSNPYGRGYLSNPGSSFGGSAISGLSA 303
+ N G GY + ++ A SA
Sbjct: 1128PAPNSAGYGYQAPQDPAYSSGAAQTYSA 1211
>TC76916 MtN4
Length = 1850
Score = 33.1 bits (74), Expect = 0.33
Identities = 22/62 (35%), Positives = 25/62 (39%), Gaps = 3/62 (4%)
Frame = +1
Query: 108 FNPQMPYGPYSPVTSPL---PSVGGDAQLYSPQQFPYTPPYYNQLVPPPNLPYLNSPTPV 164
F P +P P PVT P P + P P TPP PPP +PY P P
Sbjct: 1000 FPPHVPLPPVVPVTPPYVQPPPIVTPPTPTPPIVTPPTPPSETPCPPPPLVPY--PPPPA 1173
Query: 165 SQ 166
Q
Sbjct: 1174 QQ 1179
>TC89233 homologue to GP|18734|emb|CAA36734.1|| DNA-directed RNA polymerase
{Glycine max}, partial (21%)
Length = 648
Score = 33.1 bits (74), Expect = 0.33
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Frame = +3
Query: 108 FNPQMPYGPYSPVTSPLPSVGGDAQLYSPQQFPYTP--PYYNQLVP--PPNLPYLNSPTP 163
++P + Y P SP SP + YSP Y+P P Y+ P P+ PY + +P
Sbjct: 18 YSPSLAYSPSSPRLSPSSPYSPTSPSYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGTSP 197
Query: 164 VSQP 167
P
Sbjct: 198 DYSP 209
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.313 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,100,760
Number of Sequences: 36976
Number of extensions: 298220
Number of successful extensions: 2037
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1813
length of query: 632
length of database: 9,014,727
effective HSP length: 102
effective length of query: 530
effective length of database: 5,243,175
effective search space: 2778882750
effective search space used: 2778882750
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC144538.7