BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144517.14 - phase: 0 /pseudo
(56 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86787 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidop... 114 1e-26
TC86786 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidop... 114 1e-26
TC86785 similar to GP|13876504|gb|AAK43480.1 hypothetical protei... 112 4e-26
TC86784 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidop... 101 5e-23
TC88376 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidop... 70 1e-13
TC88377 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidop... 70 2e-13
TC91221 similar to GP|21553718|gb|AAM62811.1 unknown {Arabidopsi... 29 0.32
TC87407 similar to PIR|T49945|T49945 periaxin-like protein - Ara... 29 0.42
BQ751327 weakly similar to SP|P43076|PHR1 PH responsive protein ... 27 2.1
TC93234 weakly similar to GP|21751020|dbj|BAC03887. unnamed prot... 26 3.6
TC88009 similar to PIR|T48507|T48507 probable GTP-binding protei... 25 6.1
BQ137153 homologue to SP|P19424|GUN_B Endoglucanase precursor (E... 25 8.0
TC76720 similar to GP|11121502|emb|CAC14888. putative extensin {... 25 8.0
>TC86787 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidopsis
thaliana}, partial (23%)
Length = 841
Score = 114 bits (284), Expect = 1e-26
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = -2
Query: 1 MEGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
MEGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF
Sbjct: 390 MEGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 223
>TC86786 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidopsis
thaliana}, partial (32%)
Length = 707
Score = 114 bits (284), Expect = 1e-26
Identities = 56/56 (100%), Positives = 56/56 (100%)
Frame = -1
Query: 1 MEGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
MEGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF
Sbjct: 431 MEGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 264
>TC86785 similar to GP|13876504|gb|AAK43480.1 hypothetical protein
{Arabidopsis thaliana}, partial (8%)
Length = 663
Score = 112 bits (279), Expect = 4e-26
Identities = 55/55 (100%), Positives = 55/55 (100%)
Frame = -3
Query: 2 EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF
Sbjct: 400 EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 236
>TC86784 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidopsis
thaliana}, partial (18%)
Length = 661
Score = 101 bits (252), Expect = 5e-23
Identities = 50/55 (90%), Positives = 51/55 (91%)
Frame = -2
Query: 2 EGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGGRF 56
EGKVVGIEG GSEV AGNGGMLRDGIVG FVG+LGSGGIVSLGIEGIVGNGGRF
Sbjct: 396 EGKVVGIEGMLGSEVAAGNGGMLRDGIVGKFVGKLGSGGIVSLGIEGIVGNGGRF 232
>TC88376 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidopsis
thaliana}, partial (25%)
Length = 706
Score = 70.5 bits (171), Expect = 1e-13
Identities = 40/54 (74%), Positives = 43/54 (79%)
Frame = -3
Query: 1 MEGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
ME +V IEG GSE+ GNGG LRDG VG+ VG LGSGGIVSLGIEGIVGNGG
Sbjct: 443 MEEIMVEIEGMLGSELD-GNGGKLRDGSVGL-VGMLGSGGIVSLGIEGIVGNGG 288
Score = 26.6 bits (57), Expect = 2.1
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = -3
Query: 3 GKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLG 37
G VVGIEG+ G+ V G G + G VG+F G+LG
Sbjct: 242 GNVVGIEGKGGNVV--GIEGNVGFGKVGMF-GKLG 147
>TC88377 similar to GP|8778315|gb|AAF79324.1| F14J16.29 {Arabidopsis
thaliana}, partial (23%)
Length = 644
Score = 69.7 bits (169), Expect = 2e-13
Identities = 39/54 (72%), Positives = 43/54 (79%)
Frame = -1
Query: 1 MEGKVVGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
ME +V IEGR GSE+ GNGG LRDG VG+ VG LGSGGIVSLG EG+VGNGG
Sbjct: 425 MEEIMVEIEGRLGSELD-GNGGKLRDGSVGL-VGMLGSGGIVSLGTEGMVGNGG 270
Score = 27.3 bits (59), Expect = 1.2
Identities = 16/42 (38%), Positives = 21/42 (49%)
Frame = -1
Query: 13 GSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIVGNGG 54
G+E GNGG L G + + G + + G GI GNGG
Sbjct: 299 GTEGMVGNGGTLP*G*GNVGIEGKGGNVVGTEGNVGIEGNGG 174
>TC91221 similar to GP|21553718|gb|AAM62811.1 unknown {Arabidopsis
thaliana}, partial (31%)
Length = 917
Score = 29.3 bits (64), Expect = 0.32
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 6 VGIEGRFGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGIV 50
VG G G E G+GG L +G G G G G V +EG+V
Sbjct: 474 VGENGCHGEEEERGDGG*LEEGGGGGGGGSCGGGECVGGWVEGVV 340
>TC87407 similar to PIR|T49945|T49945 periaxin-like protein - Arabidopsis
thaliana, partial (44%)
Length = 1559
Score = 28.9 bits (63), Expect = 0.42
Identities = 17/38 (44%), Positives = 19/38 (49%)
Frame = -2
Query: 12 FGSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLGIEGI 49
FGS T GN G+ GIVG G GG S G G+
Sbjct: 322 FGSSGTLGNSGLGNSGIVG--SSGFGIGGKSSFGTSGM 215
>BQ751327 weakly similar to SP|P43076|PHR1 PH responsive protein 1 precursor
(PH-regulated protein 1). [Yeast] {Candida albicans},
partial (24%)
Length = 574
Score = 26.6 bits (57), Expect = 2.1
Identities = 16/56 (28%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
Frame = -1
Query: 2 EGKVVGIEGRFGSEVTAGNGGM----LRDGIVGIFVGRLGSGGIVSLGIEGIVGNG 53
+G V +GR V +GG+ + D + L +GG+V LG++G+ +G
Sbjct: 457 DGSVAVEKGRVPLGVVTVDGGLGLTQVGDDVDAGVAEELHAGGVVLLGVDGVGSDG 290
>TC93234 weakly similar to GP|21751020|dbj|BAC03887. unnamed protein product
{Homo sapiens}, partial (11%)
Length = 591
Score = 25.8 bits (55), Expect = 3.6
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 13 GSEVTAGNGGML--RDGIVGIFVGRLGSGGIVSLGI 46
G + G G+L DG+ G G +G+GG LG+
Sbjct: 552 GLQAVPGGEGLLVGADGLEGDIAGEVGAGGDDELGV 445
>TC88009 similar to PIR|T48507|T48507 probable GTP-binding protein -
Arabidopsis thaliana, partial (72%)
Length = 1399
Score = 25.0 bits (53), Expect = 6.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 2 EGKVVGI--EGRFGSEVTAGNGGMLRDGIVGIFV 33
+G V+G+ RFGSEV + G L +V +FV
Sbjct: 452 KGSVLGVIMGSRFGSEVVRDDFGGLFKSVVKVFV 351
>BQ137153 homologue to SP|P19424|GUN_B Endoglucanase precursor (EC 3.2.1.4)
(Endo-1 4-beta-glucanase) (Alkaline cellulase)., partial
(1%)
Length = 919
Score = 24.6 bits (52), Expect = 8.0
Identities = 8/18 (44%), Positives = 13/18 (71%)
Frame = -1
Query: 38 SGGIVSLGIEGIVGNGGR 55
+G VS +EG++G GG+
Sbjct: 181 AGDFVSFAVEGLIGGGGQ 128
>TC76720 similar to GP|11121502|emb|CAC14888. putative extensin {Nicotiana
sylvestris}, partial (51%)
Length = 1290
Score = 24.6 bits (52), Expect = 8.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 13 GSEVTAGNGGMLRDGIVGIFVGRLGSGGIVSLG 45
G + + GGM GI VG + + G+V+LG
Sbjct: 811 GEDGKSSGGGMSSGKKAGIAVGVIAAVGVVALG 909
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.152 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,174,406
Number of Sequences: 36976
Number of extensions: 11752
Number of successful extensions: 96
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of query: 56
length of database: 9,014,727
effective HSP length: 32
effective length of query: 24
effective length of database: 7,831,495
effective search space: 187955880
effective search space used: 187955880
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)
Medicago: description of AC144517.14