BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144516.4 + phase: 0
(360 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC82396 similar to GP|14318590|gb|AAH09092.1 Unknown (protein fo... 311 3e-94
TC79847 similar to GP|21689689|gb|AAM67466.1 unknown protein {Ar... 126 1e-29
TC83625 similar to GP|8096269|dbj|BAA95789.1 KED {Nicotiana taba... 40 0.001
TC81816 similar to GP|8096269|dbj|BAA95789.1 KED {Nicotiana taba... 40 0.001
TC80941 weakly similar to PIR|T39903|T39903 serine-rich protein ... 39 0.003
AW689795 weakly similar to PIR|T11678|T116 hypothetical protein ... 37 0.009
TC93151 homologue to GP|22136928|gb|AAM91808.1 unknown protein {... 34 0.10
BM779021 homologue to PIR|T05883|T058 ATP-dependent helicase F6H... 34 0.10
TC90481 weakly similar to PIR|F96526|F96526 hypothetical protein... 33 0.13
TC91646 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproli... 33 0.22
TC92575 weakly similar to GP|21428434|gb|AAM49877.1 LD13350p {Dr... 33 0.22
AW686016 weakly similar to GP|3581899|emb hypothetical serine-ri... 32 0.29
TC87595 similar to PIR|E96835|E96835 unknown protein F5I6.13 [im... 32 0.50
TC87023 similar to SP|O80361|RK4_TOBAC 50S ribosomal protein L4 ... 31 0.85
TC80288 weakly similar to PIR|T06029|T06029 hypothetical protein... 31 0.85
TC87298 similar to GP|21537171|gb|AAM61512.1 unknown {Arabidopsi... 31 0.85
TC86141 similar to GP|20260580|gb|AAM13188.1 unknown protein {Ar... 30 1.1
BQ144314 weakly similar to GP|21322711|em pherophorin-dz1 protei... 30 1.1
TC86635 weakly similar to GP|9758600|dbj|BAB09233.1 gene_id:MDF2... 30 1.1
>TC82396 similar to GP|14318590|gb|AAH09092.1 Unknown (protein for MGC:7100)
{Mus musculus}, partial (5%)
Length = 650
Score = 311 bits (797), Expect(3) = 3e-94
Identities = 156/156 (100%), Positives = 156/156 (100%)
Frame = -1
Query: 1 MKLSLKFQNNNENQQTPQTQIMTAKVPITIFNNPLLSTITATNNYSTSDFSFSLSTNFPT 60
MKLSLKFQNNNENQQTPQTQIMTAKVPITIFNNPLLSTITATNNYSTSDFSFSLSTNFPT
Sbjct: 554 MKLSLKFQNNNENQQTPQTQIMTAKVPITIFNNPLLSTITATNNYSTSDFSFSLSTNFPT 375
Query: 61 GPTFKLSYTPTTTSSSLPFSLSLKSGLGLFGSPNHSPLVFSANFSLSSLSSSTPLLPSFS 120
GPTFKLSYTPTTTSSSLPFSLSLKSGLGLFGSPNHSPLVFSANFSLSSLSSSTPLLPSFS
Sbjct: 374 GPTFKLSYTPTTTSSSLPFSLSLKSGLGLFGSPNHSPLVFSANFSLSSLSSSTPLLPSFS 195
Query: 121 LHFKPQFGHFSLHKTVLSDSSNTNPLSVSPQIEKGF 156
LHFKPQFGHFSLHKTVLSDSSNTNPLSVSPQIEKGF
Sbjct: 194 LHFKPQFGHFSLHKTVLSDSSNTNPLSVSPQIEKGF 87
Score = 47.8 bits (112), Expect(3) = 3e-94
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = -3
Query: 162 GSCSGWQNLNLEPFGHNNNNNVG 184
G S WQNLNLEPFGHNNNNNVG
Sbjct: 69 GLGSXWQNLNLEPFGHNNNNNVG 1
Score = 25.8 bits (55), Expect(3) = 3e-94
Identities = 9/13 (69%), Positives = 13/13 (99%)
Frame = -2
Query: 151 QIEKGFVPETNGS 163
++++GFVPETNGS
Sbjct: 103 KLKRGFVPETNGS 65
>TC79847 similar to GP|21689689|gb|AAM67466.1 unknown protein {Arabidopsis
thaliana}, partial (44%)
Length = 1504
Score = 126 bits (316), Expect = 1e-29
Identities = 118/376 (31%), Positives = 176/376 (46%), Gaps = 20/376 (5%)
Frame = +1
Query: 1 MKLSLKFQNNNENQQTPQTQIMTAKVPITIFNNPLLSTITATNNYSTSDFSFSLSTNFPT 60
MK SLKF+ + Q+ P ++ AKVP++I P S I A ++ + + +LST F +
Sbjct: 208 MKASLKFR---DEQKKP---LLRAKVPLSILGTPFQSGIVAGDS---KELTLNLSTFFQS 360
Query: 61 GPTFKLSYTPTTTSSSLPFSLSLKSGLGLFGSPNHSPLVFSANFSLSSLSSST-PLLPSF 119
GPT KL+Y P + + PFSL +K+G G FGSP S ++ S F+L + + T P F
Sbjct: 361 GPTLKLAYRPNDSQN--PFSLIVKTGTGPFGSPMSSSMLMSCEFNLLNRNDKTGSPQPLF 534
Query: 120 SLHFKPQFGHFSLHKTVLSDSSNTNPLSVSPQIEKGFVPETNGSCSGWQNLNLEPFGHNN 179
LHFKP+FG FS KT ++ L V KG+ NG G + E
Sbjct: 535 MLHFKPRFGDFSFKKT------QSSILDV-----KGYAFPQNGGVLGNDDTKFE---FVE 672
Query: 180 NNNVGVGVGVGVGPDGKNNEKCGLSPCVGVMARTVMPVTQGLLLNFRWGVSFP----GKS 235
+ +G G VG GL V ART +P+ +NFRWGV P G+S
Sbjct: 673 SPVIG---GFSVGKVPSAGAIAGLFSGTEVAARTRVPIRGRAAVNFRWGVRVPAEVKGES 843
Query: 236 VL-KMPYLAVNKIGLERVEEMKKDEWNNDDNCEGNLQVLKEMKIDLENVEKENK------ 288
++P+L ++KIG+E + C GNL+ LK+ K+ V
Sbjct: 844 AFGRVPFLVMDKIGVEHLPA----------EC-GNLKNLKKGKVGAAGVGVPTSADVAET 990
Query: 289 --EMKRVLD--EMKMGVSKGKVSKQKHAGESVQSWGSNKNGRKENEKKQEIK----PQNI 340
+KR ++ + + G+ + V + SV+ G ++NEKK P
Sbjct: 991 CFAVKRQMEVLQAENGLLRNAVEDLRREFASVRIGGGKSFEGRKNEKKTGSDFSGYPGKS 1170
Query: 341 VVSDFESELEKAIKAA 356
+D ELEKA++ A
Sbjct: 1171TEADASKELEKALRGA 1218
>TC83625 similar to GP|8096269|dbj|BAA95789.1 KED {Nicotiana tabacum},
partial (9%)
Length = 908
Score = 40.0 bits (92), Expect = 0.001
Identities = 43/122 (35%), Positives = 60/122 (48%), Gaps = 8/122 (6%)
Frame = -3
Query: 34 PLLSTITATNNYSTSDFSFSLSTNFPTGPTFKLSYTPTTTSSSLPFSLSLKSGLGLFGSP 93
PLLS +++++ + FS S +F + P+ LS P + S FSLS F SP
Sbjct: 858 PLLSHPPSSSSFLSFFFSLSF-LDFFSSPSLSLSSFPFSFFSFFFFSLSF------FSSP 700
Query: 94 NHS-PLVFSANFSLS-------SLSSSTPLLPSFSLHFKPQFGHFSLHKTVLSDSSNTNP 145
+ S PL FS+ FS SL SST +L FSL F F S ++S S + +
Sbjct: 699 SSSSPLTFSSFFSFFFFSLSFLSLPSSTSVLSFFSLSFFSFFSS-SFSTDLISRSFSIST 523
Query: 146 LS 147
LS
Sbjct: 522 LS 517
Score = 31.2 bits (69), Expect = 0.65
Identities = 21/85 (24%), Positives = 41/85 (47%)
Frame = +2
Query: 250 ERVEEMKKDEWNNDDNCEGNLQVLKEMKIDLENVEKENKEMKRVLDEMKMGVSKGKVSKQ 309
E+ ++ KKD+ + D+ + + K+ + ENV+ E ++ + K K K K+
Sbjct: 581 EKKDKEKKDKTDVDEGKDKKDKEKKKKEKKEENVKGEEED-----GDEKKDKEKKKKEKK 745
Query: 310 KHAGESVQSWGSNKNGRKENEKKQE 334
+ E G K +K+ EKK++
Sbjct: 746 EKGKEDKDKDGEEKKSKKDKEKKKD 820
>TC81816 similar to GP|8096269|dbj|BAA95789.1 KED {Nicotiana tabacum},
partial (13%)
Length = 663
Score = 40.0 bits (92), Expect = 0.001
Identities = 46/139 (33%), Positives = 64/139 (45%), Gaps = 29/139 (20%)
Frame = -3
Query: 38 TITATNNYSTSDFSFSLSTNF-----PTGPT---------FKLSY-----TPTTTSSSLP 78
T T +++S+S F FS + F P+ P+ F LS+ +P+ + SS P
Sbjct: 538 TDTLPSSFSSSSFFFSFLSLFFFFLLPSSPSSSSSFLSFFFSLSFLDFFSSPSLSLSSFP 359
Query: 79 FSLS--LKSGLGLFGSPNHS-PLVFSANFSLS-------SLSSSTPLLPSFSLHFKPQFG 128
FS L F SP+ S PL FS+ FS SL SST +L FSL F F
Sbjct: 358 FSFFSFFFFSLSFFSSPSSSSPLTFSSFFSFFFFSLSFLSLPSSTSVLSFFSLSFFSFFS 179
Query: 129 HFSLHKTVLSDSSNTNPLS 147
S ++S S + + LS
Sbjct: 178 S-SFSTDLISRSFSISTLS 125
Score = 31.2 bits (69), Expect = 0.65
Identities = 21/85 (24%), Positives = 41/85 (47%)
Frame = +3
Query: 250 ERVEEMKKDEWNNDDNCEGNLQVLKEMKIDLENVEKENKEMKRVLDEMKMGVSKGKVSKQ 309
E+ ++ KKD+ + D+ + + K+ + ENV+ E ++ + K K K K+
Sbjct: 189 EKKDKEKKDKTDVDEGKDKKDKEKKKKEKKEENVKGEEED-----GDEKKDKEKKKKEKK 353
Query: 310 KHAGESVQSWGSNKNGRKENEKKQE 334
+ E G K +K+ EKK++
Sbjct: 354 EKGKEDKDKDGEEKKSKKDKEKKKD 428
Score = 29.6 bits (65), Expect = 1.9
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = +3
Query: 253 EEMKKDEWNNDDNCEGNLQVLKEMKIDLENVEKENKEMKRVLDEMKMGVSKGKVSKQKHA 312
+E KKD+ +DD E + K K+ KE K+ DE + +GKVS +
Sbjct: 411 KEKKKDKNEDDDEGEDGSKKKK---------NKDKKEKKKEEDEKE----EGKVSVRDID 551
Query: 313 GESVQSWGSNKNGRKENEKKQEIK 336
E G K +KE++++++ K
Sbjct: 552 IEETAKEGKEKKKKKEDKEEKKKK 623
>TC80941 weakly similar to PIR|T39903|T39903 serine-rich protein - fission
yeast (Schizosaccharomyces pombe), partial (15%)
Length = 557
Score = 38.9 bits (89), Expect = 0.003
Identities = 32/89 (35%), Positives = 49/89 (54%), Gaps = 2/89 (2%)
Frame = -3
Query: 37 STITATNNYSTSDFSFSLSTNFPT--GPTFKLSYTPTTTSSSLPFSLSLKSGLGLFGSPN 94
S+ +++++ S S FSFS ++F + F LS +P++ SS+ FS SL S F S
Sbjct: 318 SSASSSSSVSASVFSFSSPSSFSSVSSSDFSLS-SPSSFSSTSVFSSSLPSS---FSSML 151
Query: 95 HSPLVFSANFSLSSLSSSTPLLPSFSLHF 123
S ++ FS SSLSS L ++HF
Sbjct: 150 PSASFSASIFSFSSLSSVVSLTSXINIHF 64
Score = 32.3 bits (72), Expect = 0.29
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Frame = -3
Query: 63 TFKLSYTPTTTSSSLPFSLSLKSGLGLFGSPNHSPLVFSANFSL---SSLSSSTPLLPSF 119
+F LS ++ SSS S S+ S F SP+ V S++FSL SS SS++ S
Sbjct: 342 SFDLSIVSSSASSSSSVSASVFS----FSSPSSFSSVSSSDFSLSSPSSFSSTSVFSSSL 175
Query: 120 SLHFKPQFGHFSLHKTVLSDSSNTNPLSVSPQIEKGFV 157
F S ++ S SS ++ +S++ I F+
Sbjct: 174 PSSFSSMLPSASFSASIFSFSSLSSVVSLTSXINIHFL 61
>AW689795 weakly similar to PIR|T11678|T116 hypothetical protein
SPBC21D10.06c - fission yeast (Schizosaccharomyces
pombe), partial (3%)
Length = 678
Score = 37.4 bits (85), Expect = 0.009
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 18/155 (11%)
Frame = +3
Query: 10 NNENQQTPQTQIMTAKVPITIFNNPLLSTITATNNYSTSDFSFSLSTNFPTGPTFKLSYT 69
N + T T + P T + STI + S+S + +++ PT FK T
Sbjct: 18 NMFSSSTLATSSSSISAPATFSTSMTTSTIAVNVSSSSSSSASVTTSSSPTTSLFKAGST 197
Query: 70 PTTTSSSLPFSLS----------LKSGLGLFG------SPNHSPLVFSANFSLSSLSSST 113
P +S SLP S S +G+G+FG S N + + F S++S ST
Sbjct: 198 PLPSSVSLPVSSSGSEPVETKGGQNAGIGIFGFSSSATSANSQSQIQGSVFG-STISGST 374
Query: 114 --PLLPSFSLHFKPQFGHFSLHKTVLSDSSNTNPL 146
L PS + F + + V+ SS+++PL
Sbjct: 375 VGTLAPSATSGFATS----TQSQPVVFGSSSSSPL 467
>TC93151 homologue to GP|22136928|gb|AAM91808.1 unknown protein {Arabidopsis
thaliana}, partial (4%)
Length = 657
Score = 33.9 bits (76), Expect = 0.10
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Frame = +3
Query: 29 TIFNNPLLSTITATNNYSTSDFSFSLSTNFPTGPT-FKLSYTPTTTSSSLPFSLSLKSGL 87
T+ P S+ + ++ STS FSF S+ F + P+ F + PT+T+++ P S + S
Sbjct: 111 TMSGFPFGSSSSTQSSSSTSAFSFG-SSPFGSSPSPFSTTTNPTSTATA-PSSFNFGSSS 284
Query: 88 GLFG-SPNHS-------PLVFSANFSLSSLSSSTPLLPSFSLHFKPQFGHFSLHKTVLSD 139
LFG SP S P +F + + S TP P FG S T L
Sbjct: 285 SLFGASPASSTPAAASAPSIFGSATAGSPFGGGTPSTPG------NLFGGASSASTPLFG 446
Query: 140 SSNTNPLSVSPQIEKGFVPETN 161
+ + + S + G P T+
Sbjct: 447 GAASGSTTASTTMFGGASPATS 512
>BM779021 homologue to PIR|T05883|T058 ATP-dependent helicase F6H11.20 -
Arabidopsis thaliana, partial (9%)
Length = 492
Score = 33.9 bits (76), Expect = 0.10
Identities = 21/54 (38%), Positives = 28/54 (50%)
Frame = -3
Query: 59 PTGPTFKLSYTPTTTSSSLPFSLSLKSGLGLFGSPNHSPLVFSANFSLSSLSSS 112
P G TF ++ T++++SLP L LF S + S VFS FS SSS
Sbjct: 250 PEGKTFSTFFSSTSSTTSLP-------SLSLFSSSSSSDSVFSLFFSFCCFSSS 110
>TC90481 weakly similar to PIR|F96526|F96526 hypothetical protein F27K7.9
[imported] - Arabidopsis thaliana, partial (9%)
Length = 669
Score = 33.5 bits (75), Expect = 0.13
Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 4/134 (2%)
Frame = +3
Query: 60 TGPTFKLSYTPTTTSSSLPFSLSLKSGLGLFGSP--NHSPLVFSANFSLSSLSSSTPLLP 117
T TF+ S TP T+SSS S+ + F P +H V S F+L ++S L
Sbjct: 42 TENTFQFSKTPFTSSSS---SMEWNKRI-TFSEPFSSHRTKVLSG-FTLGLVASL--LFL 200
Query: 118 SFSLHFKPQFGHFSLHKTVLSDSSNTN--PLSVSPQIEKGFVPETNGSCSGWQNLNLEPF 175
S F + LS SSN + PL Q + +PE N S G++N L F
Sbjct: 201 SLLFLNSSSFSEWHFPFANLSPSSNVSITPLFTIHQEQLSKIPEVNVSNQGFENTLLGNF 380
Query: 176 GHNNNNNVGVGVGV 189
N N + GV
Sbjct: 381 SENGYNASFLSNGV 422
>TC91646 weakly similar to GP|6523547|emb|CAB62280.1 hydroxyproline-rich
glycoprotein DZ-HRGP {Volvox carteri f. nagariensis},
partial (15%)
Length = 984
Score = 32.7 bits (73), Expect = 0.22
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Frame = +3
Query: 27 PITIFNNPLLSTITATNNYSTSDFSFSLSTNFPTGP----------TFKLSYTPTTTSSS 76
PIT P T+T N + SD SFS T+ PTG T + TP+ T +
Sbjct: 441 PITSTEEPT-GTVTDDPNTTASDESFSF-TDVPTGSDSTSVPSATTTGTETATPSATVAP 614
Query: 77 LPFSLSLKSGLGLFGSPNHSP---LVFSAN 103
P + S LG FGSP P L+ SA+
Sbjct: 615 NPALVDGFSLLGCFGSPTGFPTYDLILSAD 704
Score = 29.6 bits (65), Expect = 1.9
Identities = 16/59 (27%), Positives = 26/59 (43%)
Frame = +3
Query: 16 TPQTQIMTAKVPITIFNNPLLSTITATNNYSTSDFSFSLSTNFPTGPTFKLSYTPTTTS 74
T +T +P+T + + +T + T DFSF+ S PT + P TT+
Sbjct: 234 TSDGSTITTAIPVTTESTEIPIEVTTDDTSFTDDFSFTDSVTATEEPTETATEEPATTT 410
>TC92575 weakly similar to GP|21428434|gb|AAM49877.1 LD13350p {Drosophila
melanogaster}, partial (3%)
Length = 557
Score = 32.7 bits (73), Expect = 0.22
Identities = 31/87 (35%), Positives = 48/87 (54%), Gaps = 1/87 (1%)
Frame = +1
Query: 35 LLSTITATNNYSTSDFSFSLSTNFPTGPTFKLSYTPTTTSSSLPFSLSLKSGLGLFGSPN 94
LLST++ +++ S FSFSL ++ P+ LS + + S L +LSL S L S N
Sbjct: 277 LLSTLSLSSSLSF*LFSFSLPSSLPSR---ILSSSMASNSGFLASTLSLSSLLSSVSSLN 447
Query: 95 HSPLVFSANFSLSSLSS-STPLLPSFS 120
S ++F SS+SS ++ L SF+
Sbjct: 448 LSSSNPLSSFLSSSISSPASTFLSSFN 528
>AW686016 weakly similar to GP|3581899|emb hypothetical serine-rich protein
{Schizosaccharomyces pombe}, partial (4%)
Length = 593
Score = 32.3 bits (72), Expect = 0.29
Identities = 28/83 (33%), Positives = 41/83 (48%), Gaps = 1/83 (1%)
Frame = -3
Query: 66 LSYTPTTTSSSLPFSLSLKSGLGLFGSPNHSPLVFSAN-FSLSSLSSSTPLLPSFSLHFK 124
+S+TPT+ +++ F+ S S + +P F +N FSL+S SSS P SF L F
Sbjct: 483 ISFTPTSFAAASTFTSS---------SSSTTPSKFGSNSFSLTSSSSSKPGCNSFLLTFS 331
Query: 125 PQFGHFSLHKTVLSDSSNTNPLS 147
F + SS+T P S
Sbjct: 330 ASAPKFRSTVSKT*SSSSTIPSS 262
>TC87595 similar to PIR|E96835|E96835 unknown protein F5I6.13 [imported] -
Arabidopsis thaliana, partial (33%)
Length = 896
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/115 (29%), Positives = 42/115 (35%)
Frame = +3
Query: 56 TNFPTGPTFKLSYTPTTTSSSLPFSLSLKSGLGLFGSPNHSPLVFSANFSLSSLSSSTPL 115
TN T F PTT SSSL S S S FS +FSL S S S+P
Sbjct: 204 TNMATLNVFSQPLHPTTISSSLCSSSSSNS-------------TFSCHFSLLS-SHSSPT 341
Query: 116 LPSFSLHFKPQFGHFSLHKTVLSDSSNTNPLSVSPQIEKGFVPETNGSCSGWQNL 170
L S H F + L SS + ++ P + S Q+L
Sbjct: 342 LSKLSNHVHTHFSKSGNGSSWLQSSSTADSIAHKKGPVYSVFPSSPAQVSSVQDL 506
>TC87023 similar to SP|O80361|RK4_TOBAC 50S ribosomal protein L4
chloroplast precursor (R-protein L4). [Common tobacco]
{Nicotiana tabacum}, partial (78%)
Length = 1283
Score = 30.8 bits (68), Expect = 0.85
Identities = 52/235 (22%), Positives = 91/235 (38%), Gaps = 12/235 (5%)
Frame = +2
Query: 33 NPLLSTITATNNYSTSDFSFSLSTNFPTGPTFKLSYTPTTTSSSLPFSLSLKSGLGLFGS 92
N ++++++T +++ SF S+ F + KL +TP + S S SLS+ L
Sbjct: 95 NKKMASLSSTLTPTSTSLSFFSSSIFISNSIPKLKFTPNSNSISHTNSLSISCKLATL-- 268
Query: 93 PNHSPLVFSANFSLSSLSSSTPLLPSFSLHFKPQFGHFSLHKTVLSDSSNTNPLSVSPQI 152
PL+ +FS + ST + S S P +H+ ++ D N + S
Sbjct: 269 ----PLL---SFSGEKIGESTLDVKSAS----PSTSRAVVHRAIIHDLQNKRRGTASTLT 415
Query: 153 EKGFVPETNGSCSGWQNLNLEPFGHNNNNNVGV----GVGVGVGPD--------GKNNEK 200
E G G + N + G ++ G GV GP K ++
Sbjct: 416 R----AEVRG--GGRKPYNQKKTGRARQGSIRTPLRPGGGVIFGPKPRDWTIKINKKEKR 577
Query: 201 CGLSPCVGVMARTVMPVTQGLLLNFRWGVSFPGKSVLKMPYLAVNKIGLERVEEM 255
+S V A + V + +G F G + K A+ + GL+ E++
Sbjct: 578 LAISTAVASAAVNTVVVEE-------FGDEFEGNAKTKEFIAAMKRWGLDPTEKV 721
>TC80288 weakly similar to PIR|T06029|T06029 hypothetical protein T28I19.100
- Arabidopsis thaliana, partial (14%)
Length = 1460
Score = 30.8 bits (68), Expect = 0.85
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = -2
Query: 37 STITATNNYSTSDFSFSLSTNFPTGPTFKLSYTPTTTSSSLPFSLS-LKSGLGLFGSPNH 95
ST +++ + S SDFS S S+ T P P++++SSL S S S LF S +
Sbjct: 700 STTSSSRSLSASDFS*SFSS-ISTSP-------PSSSTSSLLLSFSSCTSAPCLFSSSSC 545
Query: 96 SPLVFSANFSLSSLSSSTPLL 116
S L+ + +LSSLSSS L
Sbjct: 544 SSLL---SCTLSSLSSSVSCL 491
>TC87298 similar to GP|21537171|gb|AAM61512.1 unknown {Arabidopsis thaliana},
partial (20%)
Length = 1773
Score = 30.8 bits (68), Expect = 0.85
Identities = 15/36 (41%), Positives = 18/36 (49%)
Frame = +2
Query: 197 NNEKCGLSPCVGVMARTVMPVTQGLLLNFRWGVSFP 232
NN KCG+ CV A + GLLL + G FP
Sbjct: 1367 NNRKCGIGKCVVAFAVGLSLAGAGLLLGWTMGWMFP 1474
>TC86141 similar to GP|20260580|gb|AAM13188.1 unknown protein {Arabidopsis
thaliana}, partial (82%)
Length = 1876
Score = 30.4 bits (67), Expect = 1.1
Identities = 15/54 (27%), Positives = 30/54 (54%)
Frame = +1
Query: 34 PLLSTITATNNYSTSDFSFSLSTNFPTGPTFKLSYTPTTTSSSLPFSLSLKSGL 87
P S ++ ++ S+ SF + ++P P +K + TP++ S+P + +L S L
Sbjct: 229 PWFSMVSPISSPSSFSSSFPSTPHYPPPPPYKSTPTPSSLHFSIPTTRNLPSSL 390
>BQ144314 weakly similar to GP|21322711|em pherophorin-dz1 protein {Volvox
carteri f. nagariensis}, partial (6%)
Length = 1154
Score = 30.4 bits (67), Expect = 1.1
Identities = 24/81 (29%), Positives = 35/81 (42%), Gaps = 3/81 (3%)
Frame = +2
Query: 59 PTGPTFKLSYTPTTTSSSLPFSLSLKSGLGLFGS--PNHSPLVFSANFSLSSLSSSTPLL 116
PT T +TPT + LP L L F P H+ L F+ +F L ++ L
Sbjct: 59 PTTQTANPPHTPTIKKNPLPSPLFLSPPPSPFPFFLPTHNTLSFTYSFLLYKHTTKQKKL 238
Query: 117 PSFSLHF-KPQFGHFSLHKTV 136
PS F P ++HK++
Sbjct: 239 PSLFFSFPSPSRFRQTIHKSI 301
>TC86635 weakly similar to GP|9758600|dbj|BAB09233.1
gene_id:MDF20.10~pir||T08929~similar to unknown protein
{Arabidopsis thaliana}, partial (32%)
Length = 1963
Score = 30.4 bits (67), Expect = 1.1
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = -2
Query: 23 TAKVPITIFNNPLLSTITATNNYSTSDFSFSLSTNF-PTGP----TFKLSYTPTTTSSSL 77
T + + +F + S+ T ++ S +F L+ F P P S+ + SSS
Sbjct: 324 TGRSLVGVFGSGSFSSFFLT--FTFSSLTFPLARFFDPFSPLLPSALSSSFDLSIVSSSA 151
Query: 78 PFSLSLKSGLGLFGSPNHSPLVFSANFSLSSLSS 111
S S+ + + F SP+ V S++FSLSS SS
Sbjct: 150 SSSSSVSASVFSFSSPSSFSSVSSSDFSLSSPSS 49
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.310 0.128 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,615,216
Number of Sequences: 36976
Number of extensions: 202490
Number of successful extensions: 1551
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of query: 360
length of database: 9,014,727
effective HSP length: 97
effective length of query: 263
effective length of database: 5,428,055
effective search space: 1427578465
effective search space used: 1427578465
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC144516.4