TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144515.17 - phase: 0 /pseudo
         (58 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CA922983                                                               26  3.6
BG644710 similar to GP|3746570|gb|A putative pyruvate oxidoreduc...    25  4.6
BM814840 weakly similar to GP|15128241|db helicase-like protein ...    25  7.9
TC85953 homologue to GP|3980264|emb|CAA09603.1 20S proteasome be...    25  7.9

>CA922983 
          Length = 779

 Score = 25.8 bits (55), Expect = 3.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 22 DLVHRNHTRPRRYQLLQIMCVLDPSCMIHMFIMNC 56
          D V  N ++PR   L+ I C++     IH F   C
Sbjct: 51 DCVKNNKSKPRTEALILITCMILLLTFIHAFTFLC 155


>BG644710 similar to GP|3746570|gb|A putative pyruvate oxidoreductase; POR
           {Brachyspira pilosicoli}, partial (5%)
          Length = 661

 Score = 25.4 bits (54), Expect = 4.6
 Identities = 17/57 (29%), Positives = 31/57 (53%), Gaps = 9/57 (15%)
 Frame = +3

Query: 7   HMLNVRPILSNLG--EVDLVHR--NHTRPRRYQLLQIMC-----VLDPSCMIHMFIM 54
           H+   R +L + G   V+L  R  +HTRPR +QLL  +      ++ P+C + + ++
Sbjct: 282 HLQACRIVLEDAG*RYVELQGREVDHTRPRPFQLLGFLAKFWDNLVQPNCSLSLGVI 452


>BM814840 weakly similar to GP|15128241|db helicase-like protein {Oryza
           sativa (japonica cultivar-group)}, partial (6%)
          Length = 733

 Score = 24.6 bits (52), Expect = 7.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 13  PILSNLGEVDLVHRNHTRPRRYQLLQIMCVLDPSCMIHMF 52
           P+ SN G +    RN   PR    L  MC  + +C  H+F
Sbjct: 173 PLKSN-GNIS-TRRNQIHPRNVGNLTSMCTTNNTCTNHIF 60


>TC85953 homologue to GP|3980264|emb|CAA09603.1 20S proteasome beta subunit
           {Cicer arietinum}, complete
          Length = 1183

 Score = 24.6 bits (52), Expect = 7.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 35  QLLQIMCVLDPSCMIHMFIMNCKQ 58
           + L ++CV   +CM  ++I NC+Q
Sbjct: 898 EFLILVCVF*INCMDMIYIQNCRQ 969


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.334    0.142    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,305,560
Number of Sequences: 36976
Number of extensions: 29471
Number of successful extensions: 316
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of query: 58
length of database: 9,014,727
effective HSP length: 34
effective length of query: 24
effective length of database: 7,757,543
effective search space: 186181032
effective search space used: 186181032
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 51 (24.3 bits)