TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144503.8 - phase: 0 
         (729 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AL379994 similar to GP|18700079|gb AT5g49830/K21G20_4 {Arabidops...   250  1e-66
AL374174 weakly similar to GP|15810036|gb| At1g10180/F14N23_6 {A...    51  1e-06
TC79468 similar to PIR|T48557|T48557 hypothetical protein F14F18...    32  0.66
BQ141707 homologue to PIR|T23451|T234 hypothetical protein K08E3...    32  0.87
TC87844 similar to GP|21537214|gb|AAM61555.1 unknown {Arabidopsi...    31  1.5
TC82535 similar to GP|17381261|gb|AAL36049.1 At1g61590/T25B24_6 ...    28  9.6

>AL379994 similar to GP|18700079|gb AT5g49830/K21G20_4 {Arabidopsis
           thaliana}, partial (15%)
          Length = 470

 Score =  250 bits (639), Expect = 1e-66
 Identities = 123/123 (100%), Positives = 123/123 (100%)
 Frame = -1

Query: 607 SEDQSFWDDIEEGPRPLGPLGLQQFYLDMKFVVCFASNGRYLSRNLQRIVNEIIRKAMSA 666
           SEDQSFWDDIEEGPRPLGPLGLQQFYLDMKFVVCFASNGRYLSRNLQRIVNEIIRKAMSA
Sbjct: 470 SEDQSFWDDIEEGPRPLGPLGLQQFYLDMKFVVCFASNGRYLSRNLQRIVNEIIRKAMSA 291

Query: 667 FSATGMDPYSDLPEDEWFNEICQDAMERLSGKPKEINGERELSSPTASVSAQSISSVRSH 726
           FSATGMDPYSDLPEDEWFNEICQDAMERLSGKPKEINGERELSSPTASVSAQSISSVRSH
Sbjct: 290 FSATGMDPYSDLPEDEWFNEICQDAMERLSGKPKEINGERELSSPTASVSAQSISSVRSH 111

Query: 727 NSS 729
           NSS
Sbjct: 110 NSS 102


>AL374174 weakly similar to GP|15810036|gb| At1g10180/F14N23_6 {Arabidopsis
           thaliana}, partial (8%)
          Length = 199

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 26/61 (42%), Positives = 37/61 (60%)
 Frame = +2

Query: 635 MKFVVCFASNGRYLSRNLQRIVNEIIRKAMSAFSATGMDPYSDLPEDEWFNEICQDAMER 694
           M F V  A    Y SR++ +I + II +A+  FSA G++P S LP DEWF E  + A+ +
Sbjct: 2   MHFTVEIARFAGYPSRHVHQIASAIIARAIRTFSARGINPQSALPADEWFVETAKSAINK 181

Query: 695 L 695
           L
Sbjct: 182 L 184


>TC79468 similar to PIR|T48557|T48557 hypothetical protein F14F18.150 -
           Arabidopsis thaliana, partial (79%)
          Length = 1761

 Score = 32.3 bits (72), Expect = 0.66
 Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 5/152 (3%)
 Frame = +1

Query: 1   MRRSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLADGV--HIDSLSISDSD 58
           M+     NY +FI  +  +  +  E+SSI   L +    I  L  G    I+S      +
Sbjct: 376 MQEVAVGNYRSFIAAADALLAIRHEVSSIDTHLESMINEIPKLTSGCTEFIESAE-QILE 552

Query: 59  GFSVNGALDSEHKEISDLDKWLVEFPDLLDVLLAERRVEEAL---AALDEGERVVSEAKE 115
              +N  + + H  + D    L+E P L+D  +     +EAL   A + +   +  +   
Sbjct: 553 KRKMNQTMLANHSTLLD----LLEIPQLMDTCVRNGNYDEALDLEAFVGKLSTMHPKLPI 720

Query: 116 MKSLNPSLLLSLQSSITERRQKLADQLAEAAC 147
           +++L   + L+ QS +++  QKL   +    C
Sbjct: 721 IQALAAEVRLTTQSLLSQLLQKLRSNIQLPEC 816


>BQ141707 homologue to PIR|T23451|T234 hypothetical protein K08E3.2 -
           Caenorhabditis elegans, partial (3%)
          Length = 1181

 Score = 32.0 bits (71), Expect = 0.87
 Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 5/63 (7%)
 Frame = -1

Query: 445 SSLNQDPYKDDNRRRTTE--RQNRHPEQREWRRRLVGSVDRLKDSFCRQH---ALSLIFT 499
           S L+Q P   + + +TT   R ++HP +R   R ++G  D L    CR        LIF 
Sbjct: 467 SRLDQSPSIHNTQPKTTHPARYHQHPRRRSVSRNVLGRGDLLNRDSCRTRIPFKFILIFL 288

Query: 500 EDG 502
           +DG
Sbjct: 287 KDG 279


>TC87844 similar to GP|21537214|gb|AAM61555.1 unknown {Arabidopsis
           thaliana}, partial (73%)
          Length = 1456

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 15/37 (40%), Positives = 22/37 (58%)
 Frame = -3

Query: 631 FYLDMKFVVCFASNGRYLSRNLQRIVNEIIRKAMSAF 667
           F+ ++     F SNG ++ RNL+  VN I R+  SAF
Sbjct: 323 FWTEVIISPLFCSNGNFVKRNLRLEVNVITRRRKSAF 213


>TC82535 similar to GP|17381261|gb|AAL36049.1 At1g61590/T25B24_6
           {Arabidopsis thaliana}, partial (37%)
          Length = 677

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 551 LSIHIFLIVECLVHSFEELFIKL 573
           LS+ IFL++ CLV    ELFI++
Sbjct: 308 LSLRIFLVISCLVKVVLELFIRV 376


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,478,375
Number of Sequences: 36976
Number of extensions: 246209
Number of successful extensions: 1218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of query: 729
length of database: 9,014,727
effective HSP length: 103
effective length of query: 626
effective length of database: 5,206,199
effective search space: 3259080574
effective search space used: 3259080574
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)