BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144484.10 - phase: 0
(589 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC91260 similar to GP|8843865|dbj|BAA97391.1 DEAD-box protein ab... 327 8e-94
BI271075 homologue to GP|8843865|dbj DEAD-box protein abstrakt {... 306 4e-92
TC77771 homologue to GP|6137207|gb|AAF04377.1| P72 DEAD box prot... 270 1e-72
TC78248 similar to GP|16323192|gb|AAL15330.1 At2g47330/T8I13.17 ... 200 4e-72
TC89152 similar to PIR|H84854|H84854 probable ATP-dependent RNA ... 231 5e-66
TC76342 similar to PIR|A86444|A86444 probable RNA helicase [impo... 248 6e-66
TC79034 similar to GP|10177293|dbj|BAB10554. ATP-dependent RNA h... 147 2e-62
TC80853 similar to GP|17064740|gb|AAL32524.1 ATP-dependent RNA h... 197 1e-50
TC79189 similar to GP|21593647|gb|AAM65614.1 replication protein... 109 2e-49
TC76958 homologue to SP|P41382|IF4U_TOBAC Eukaryotic initiation ... 189 3e-48
TC78036 homologue to PIR|T06824|T06824 translation initiation fa... 188 6e-48
TC76575 homologue to SP|Q40465|IF4V_TOBAC Eukaryotic initiation ... 185 4e-47
TC77435 similar to GP|7211427|gb|AAF40306.1| RNA helicase {Vigna... 180 1e-45
TC77964 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_9... 177 8e-45
TC86022 homologue to GP|19423939|gb|AAL87312.1 putative RNA heli... 174 1e-43
TC87653 similar to PIR|D96799|D96799 hypothetical protein F22K20... 142 2e-43
TC92952 homologue to GP|14209595|dbj|BAB56090. putative ethylene... 172 3e-43
TC89900 similar to GP|9759355|dbj|BAB10010.1 RNA helicase-like p... 169 4e-42
BG452245 similar to PIR|H86341|H8 hypothetical protein AAD30599.... 159 2e-39
TC82878 similar to PIR|T45677|T45677 ATP-dependent RNA helicase-... 148 5e-36
>TC91260 similar to GP|8843865|dbj|BAA97391.1 DEAD-box protein abstrakt
{Arabidopsis thaliana}, partial (29%)
Length = 669
Score = 327 bits (837), Expect(2) = 8e-94
Identities = 163/163 (100%), Positives = 163/163 (100%)
Frame = +1
Query: 1 MEEEDDYEEYIPVAKRRAMEAQKILQRKGKATAAIQEDDSEKLKVVETKPSLLVKASQLK 60
MEEEDDYEEYIPVAKRRAMEAQKILQRKGKATAAIQEDDSEKLKVVETKPSLLVKASQLK
Sbjct: 139 MEEEDDYEEYIPVAKRRAMEAQKILQRKGKATAAIQEDDSEKLKVVETKPSLLVKASQLK 318
Query: 61 KDQPEISVTEQIVQQEKEMIENLSDKKTLMSVRELAKGITYTEPLPTGWKPPLHIRRMSK 120
KDQPEISVTEQIVQQEKEMIENLSDKKTLMSVRELAKGITYTEPLPTGWKPPLHIRRMSK
Sbjct: 319 KDQPEISVTEQIVQQEKEMIENLSDKKTLMSVRELAKGITYTEPLPTGWKPPLHIRRMSK 498
Query: 121 KDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKG 163
KDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKG
Sbjct: 499 KDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKG 627
Score = 36.2 bits (82), Expect(2) = 8e-94
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +2
Query: 160 KTKGIVQPTPIQVQGLP 176
K KGIVQPTPIQVQGLP
Sbjct: 617 KPKGIVQPTPIQVQGLP 667
>BI271075 homologue to GP|8843865|dbj DEAD-box protein abstrakt {Arabidopsis
thaliana}, partial (28%)
Length = 510
Score = 306 bits (783), Expect(2) = 4e-92
Identities = 151/153 (98%), Positives = 152/153 (98%)
Frame = +1
Query: 395 PPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDV 454
PPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDV
Sbjct: 1 PPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDV 180
Query: 455 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 514
ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL
Sbjct: 181 ASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHL 360
Query: 515 LQEAKQRIPPVLAELVDPMEDNEEITGISGVKG 547
LQEAKQRIPPVLAELVDPMEDNEEITGISG +G
Sbjct: 361 LQEAKQRIPPVLAELVDPMEDNEEITGISGCQG 459
Score = 51.2 bits (121), Expect(2) = 4e-92
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +2
Query: 544 GVKGCAYCGGLGHRIRDCPK 563
GVKGCAYCGGLGHRIRDCPK
Sbjct: 449 GVKGCAYCGGLGHRIRDCPK 508
>TC77771 homologue to GP|6137207|gb|AAF04377.1| P72 DEAD box protein {Pisum
sativum}, partial (69%)
Length = 1736
Score = 270 bits (689), Expect = 1e-72
Identities = 151/388 (38%), Positives = 228/388 (57%), Gaps = 6/388 (1%)
Frame = +1
Query: 124 DLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRD 183
D +++ I V G+ +PPP+ +F FP IL+ ++ G PTPIQ Q P+ L +D
Sbjct: 571 DAYRRRHEITVTGDNVPPPVTSFASSGFPSEILREVQNAGFSAPTPIQAQS*PIALQSKD 750
Query: 184 MIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEF 243
++ IA TGSGKTL ++LP + + + GP L++ P+RELA Q + +F
Sbjct: 751 IVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKM----GPTVLVLSPTRELATQIQDEAVKF 918
Query: 244 LLPLKEAGYPELRPLLCI-GGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCR 302
+ A C+ GG QL+ + +G IVVATPGRL D+L ++++L
Sbjct: 919 SKTSRIA-------CTCLYGGAPKGPQLKDIDRGADIVVATPGRLNDILEMRRISLHQVS 1077
Query: 303 YLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVG 362
YL LDEADR++D+GFE IR++ + A+RQTL+F+AT P +++ A LV P+ VN+G
Sbjct: 1078YLVLDEADRMLDMGFEPQIRKIVNGVPARRQTLMFTATWPKEVRRIAADLLVNPVQVNIG 1257
Query: 363 RAG--AANLDVIQEVE---YVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLL 417
AN + Q +E YV+++ ++ +L Q ++IFC K D + L
Sbjct: 1258NVDELVANKSITQHIEVLTYVEKQRRLETILRS-QDQGSKIIIFCSTKKMCDQLARNLT- 1431
Query: 418 KGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 477
+ A AIHG K Q +R++ ++ F++G+ VLVATDVA++GLD DI+ V+N+D P +E
Sbjct: 1432RQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNFDFPTGVE 1611
Query: 478 NYVHRIGRTGRCGKTGIATTFINKNQSE 505
+YVHRIGRTGR G TGIA TF ++
Sbjct: 1612DYVHRIGRTGRAGATGIAYTFFGDQDAK 1695
>TC78248 similar to GP|16323192|gb|AAL15330.1 At2g47330/T8I13.17 {Arabidopsis
thaliana}, partial (79%)
Length = 2745
Score = 200 bits (509), Expect(3) = 4e-72
Identities = 121/271 (44%), Positives = 159/271 (58%), Gaps = 3/271 (1%)
Frame = +2
Query: 144 KNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMI 203
K+ + + F I+ +K +G +PT IQ Q LPV+LSGRD+IGIA TGSGKT FVLPMI
Sbjct: 896 KHLRTVGFAPQIMGAIKKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMI 1075
Query: 204 MMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGG 263
+ M + + EGP G+I P+RELA Q Y ++F K G +R GG
Sbjct: 1076 VHIMDQPELQK---EEGPIGVICAPTRELAHQIYLEAKKFA---KAYG---IRVSAVYGG 1228
Query: 264 IDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 323
+ Q + +K G IVVATPGRL DML K + + YL LDEADR+ DLGFE +R
Sbjct: 1229 MSKLEQFKELKAGCEIVVATPGRLIDMLKMKALAMLRATYLVLDEADRMFDLGFEPQVRS 1408
Query: 324 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEA- 382
+ + RQTLLFSATMP K++ AR L PI V VG G AN D+ Q V+ + ++
Sbjct: 1409 IVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDSE 1588
Query: 383 KIVYLLECLQK--TPPPVLIFCENKADVDDI 411
K+ +LLE L + L+F KA VD+I
Sbjct: 1589 KLPWLLEKLHEMIDQGDTLVFASKKATVDEI 1681
Score = 85.5 bits (210), Expect(3) = 4e-72
Identities = 46/113 (40%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Frame = +3
Query: 418 KGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIE 477
+G + A+HG KDQ R + FK+G VL+ATDVA++GLD I+ V+N+D+ +++
Sbjct: 1701 RGFKVAALHGDKDQSSRMDILQKFKSGAYHVLIATDVAARGLDIKSIKTVVNFDIAKDMD 1880
Query: 478 NYVHRIGRTGRCG-KTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 529
+VHRIGRTGR G K G+A T I + ++ +L + L A Q + L +L
Sbjct: 1881 MHVHRIGRTGRAGDKDGVAYTLITQKEARFA-GELVNSLVAAGQNVSTELMDL 2036
Score = 25.8 bits (55), Expect(3) = 4e-72
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = +1
Query: 128 KQWHIIVNGEEIPPPIKNFKDMRF 151
K I V+G E+P P+K F+D F
Sbjct: 847 KSLAIRVSGFEVPKPVKTFEDCGF 918
>TC89152 similar to PIR|H84854|H84854 probable ATP-dependent RNA helicase
[imported] - Arabidopsis thaliana, partial (72%)
Length = 1787
Score = 231 bits (588), Expect(2) = 5e-66
Identities = 130/331 (39%), Positives = 194/331 (58%), Gaps = 14/331 (4%)
Frame = +3
Query: 165 VQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMP--IVPGEGPF 222
V+PTP+Q +P+ L+GRD++ A TGSGKT F P+I + E+ + P
Sbjct: 234 VKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILTEQYAQRPRVARTAYPL 413
Query: 223 GLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVA 282
LI+ P+REL+ Q ++ ++F + G ++ ++ GG + QL +++GV I+VA
Sbjct: 414 ALILSPTRELSCQIHDEAKKFSY---QTG---VKVVVAYGGAPITQQLRELERGVDILVA 575
Query: 283 TPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK----AQRQTLLFS 338
TPGRL D+L + +++L RYL LDEADR++D+GFE IR++ + RQTLLFS
Sbjct: 576 TPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFS 755
Query: 339 ATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPP- 397
AT P +IQ A L I + VGR G++ + Q VEYV + K +L++ L
Sbjct: 756 ATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQREND 935
Query: 398 -------VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLV 450
L+F E K D + L + G A IHG + Q+ERE A+ SFK G +LV
Sbjct: 936 VNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILV 1115
Query: 451 ATDVASKGLDFPDIQHVINYDMPAEIENYVH 481
ATDVA++GLD P + HV+N+D+P +I++YVH
Sbjct: 1116ATDVAARGLDIPRVAHVVNFDLPNDIDDYVH 1208
Score = 39.3 bits (90), Expect(2) = 5e-66
Identities = 20/41 (48%), Positives = 26/41 (62%)
Frame = +1
Query: 483 IGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 523
IGRTGR GK G+AT F N + + + L L+QEA Q +P
Sbjct: 1213 IGRTGRAGKMGLATAFFN-DSNLSMAKPLADLMQEANQEVP 1332
>TC76342 similar to PIR|A86444|A86444 probable RNA helicase [imported] -
Arabidopsis thaliana, partial (80%)
Length = 1651
Score = 248 bits (632), Expect = 6e-66
Identities = 152/395 (38%), Positives = 229/395 (57%), Gaps = 7/395 (1%)
Frame = +3
Query: 136 GEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKT 195
G+E P+K F+D P+ +L+ K G +P+PIQ + P +L GRD+IGIA TGSGKT
Sbjct: 342 GDEKYTPVKRFEDSGLPENVLECCK--GFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKT 515
Query: 196 LVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPEL 255
L F +P IM M + G P L++ P+RELA+Q +V L +AG
Sbjct: 516 LAFGIPAIMHVMNKRKSKGSSKGRNPLCLMLSPTRELAQQISDV-------LCDAGKSCG 674
Query: 256 RPLLCI-GGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD 314
+C+ GG +Q+ +K G+ IV+ TPGR++D++ L ++ LDEADR++D
Sbjct: 675 VESVCLYGGTPKGAQISALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLD 854
Query: 315 LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSAL-VKPIIVNVGRAG-AANLDVI 372
+GFE +R + + RQ ++FSAT P + + A+ + P+ V VG +AN DV+
Sbjct: 855 MGFEQIVRSILGQTCSARQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVM 1034
Query: 373 QEVEYVKQEAKIVYLLECLQKTPPP----VLIFCENKADVDDIHEYLLLKGVEAVAIHGG 428
Q VE + + + LL L+K VL+F K + + + L G +AV+I G
Sbjct: 1035QIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGD 1214
Query: 429 KDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGR 488
K Q ER A+S FK G +++ATDVA++GLD PD++ VIN+ P +E+YVHRIGRTGR
Sbjct: 1215KSQHERTKALSLFKNGSCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGR 1394
Query: 489 CGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIP 523
GK G+A TF + ++ +L ++L+EA Q +P
Sbjct: 1395AGKKGVAHTFFT-HLNKGLAGELVNVLREAGQVVP 1496
>TC79034 similar to GP|10177293|dbj|BAB10554. ATP-dependent RNA
helicase-like protein {Arabidopsis thaliana}, partial
(65%)
Length = 1443
Score = 147 bits (371), Expect(2) = 2e-62
Identities = 93/233 (39%), Positives = 131/233 (55%), Gaps = 3/233 (1%)
Frame = +3
Query: 176 PVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQ 235
P+ L+GRD+IGIA TGSGKTL ++LP I+ + +V GEGP L++ P+RELA Q
Sbjct: 6 PMALTGRDLIGIAETGSGKTLSYLLPAIVHVSAQP---RLVQGEGPVVLVLAPTRELAVQ 176
Query: 236 TYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKK 295
+ +F +R GG Q+ ++ GV IV+ATPGRL DML +
Sbjct: 177 IQQEAMKF------GSRSNIRCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEAQH 338
Query: 296 MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVK 355
NL YL LDEADR++D+GFE IR++ + + RQTL +SAT P ++++ AR L
Sbjct: 339 TNLQRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVESLARQFLHN 518
Query: 356 PIIVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQKT--PPPVLIFCENK 405
P V +G AN + Q VE V K L++ L++ +LIF E K
Sbjct: 519 PYKVVIGSPYLKANQSINQVVEVVTDMEKYNRLIKLLKEVMDGSRILIFTETK 677
Score = 110 bits (275), Expect(2) = 2e-62
Identities = 54/127 (42%), Positives = 82/127 (64%)
Frame = +1
Query: 403 ENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP 462
+ K D + L + G A++IHG K+Q ER++ ++ FK+G+ ++ ATDVA++GLD
Sbjct: 670 KQKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVK 849
Query: 463 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRI 522
DI+ V+NYD P+ +E+YVHRIGRTGR G G A +F ++ DL +LQ+A Q +
Sbjct: 850 DIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFTSANAKYA-RDLIKILQDAGQIV 1026
Query: 523 PPVLAEL 529
P L+ L
Sbjct: 1027SPALSAL 1047
>TC80853 similar to GP|17064740|gb|AAL32524.1 ATP-dependent RNA
helicase-like protein {Arabidopsis thaliana}, partial
(71%)
Length = 1065
Score = 197 bits (500), Expect = 1e-50
Identities = 106/245 (43%), Positives = 151/245 (61%), Gaps = 12/245 (4%)
Frame = +2
Query: 295 KMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQ----RQTLLFSATMPTKIQNFAR 350
+++L RYL LDEADR++D+GFE IR++ + RQT+LFSAT P +IQ A
Sbjct: 2 RVSLSMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGVRQTMLFSATFPKEIQRLAS 181
Query: 351 SALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECL--------QKTPPPVLIFC 402
L I + VGR G++ + Q VEYV++ K +L++ L Q L+F
Sbjct: 182 DFLSNYIFLAVGRVGSSTDLIDQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFV 361
Query: 403 ENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFP 462
E K D + +L L A IHG + Q+ERE A+ SFK+G +LVATDVA++GLD P
Sbjct: 362 ETKKGADALEHWLCLNNFPATTIHGDRSQQEREAALRSFKSGNTPILVATDVAARGLDIP 541
Query: 463 DIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRI 522
+ HV+N+D+P +I++YVHRIGRTGR GK G+AT F N+N + + L+ L+QEA Q +
Sbjct: 542 HVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNT-SMARSLQDLMQEANQEV 718
Query: 523 PPVLA 527
P L+
Sbjct: 719 PAWLS 733
>TC79189 similar to GP|21593647|gb|AAM65614.1 replication protein A1-like
{Arabidopsis thaliana}, partial (79%)
Length = 1251
Score = 109 bits (273), Expect(2) = 2e-49
Identities = 58/186 (31%), Positives = 102/186 (54%), Gaps = 1/186 (0%)
Frame = +2
Query: 321 IREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQ 380
+ E+ +R+T LFSATM K++ R L P+ + + + Q+ ++
Sbjct: 671 LNEILGMIPRERRTFLFSATMTKKVEKLQRVCLRNPVKIETSSKYSTVDTLKQQYRFLPA 850
Query: 381 EAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLK-GVEAVAIHGGKDQEEREYAIS 439
+ K YL+ L + + D + +L G++A+ I+G Q +R A++
Sbjct: 851 KHKDCYLVYILTEMAGSTSMVFTRTCDSTRLLALILRNLGLKAIPINGHMSQPKRLGALN 1030
Query: 440 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFI 499
FK+G ++L+ TDVAS+GLD P + VINYD+P ++Y+HR+GRT R G++G+A + +
Sbjct: 1031KFKSGDCNILLCTDVASRGLDIPAVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLV 1210
Query: 500 NKNQSE 505
N+ + E
Sbjct: 1211NQYELE 1228
Score = 104 bits (260), Expect(2) = 2e-49
Identities = 67/184 (36%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Frame = +1
Query: 137 EEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTL 196
EE +K+FKD+ P+ +++ + G P IQ++ +P L G+D+IG+A TGSGKT
Sbjct: 151 EEENKEMKSFKDLGLPESLVEACEKMGWKNPLKIQIEAIPPALEGKDLIGLAKTGSGKTG 330
Query: 197 VFVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELR 256
F LP++ ++ F ++ P+RELA Q + E+F E G ++
Sbjct: 331 AFALPIL------HALLEAPRPNHFFACVMSPTRELAIQ---ISEQFEALGSEIG---VK 474
Query: 257 PLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKK-MNLDNCRYLTLDEADRLVDL 315
+ +GGIDM Q + K HI+V TPGR+ D L K +L +YL LDEADRL++
Sbjct: 475 CAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVLDHLKNTKGFSLARLKYLVLDEADRLLNE 654
Query: 316 GFED 319
FE+
Sbjct: 655 DFEE 666
>TC76958 homologue to SP|P41382|IF4U_TOBAC Eukaryotic initiation factor
4A-10 (eIF-4A-10) (eIF4A-10). [Common tobacco]
{Nicotiana tabacum}, complete
Length = 1761
Score = 189 bits (479), Expect = 3e-48
Identities = 118/389 (30%), Positives = 203/389 (51%), Gaps = 3/389 (0%)
Frame = +3
Query: 145 NFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIM 204
+F M + +L+ + G +P+ IQ +G+ + G D+I A +G+GKT F ++
Sbjct: 288 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGIL- 464
Query: 205 MAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGI 264
+++ + + L++ P+RELA+Q +V+ Y ++ C+GG
Sbjct: 465 ----QQLDYSVTECQA---LVLAPTRELAQQIEKVMRAL------GDYLGVKVHACVGGT 605
Query: 265 DMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREV 324
+R I+ GVH+VV TPGR+ DML ++ + D + LDEAD ++ GF+D I ++
Sbjct: 606 SVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 785
Query: 325 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQE--VEYVKQEA 382
F ++ Q +FSATMP + R + KP+ + V R L+ I++ V K+E
Sbjct: 786 FQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKR-DELTLEGIKQFYVNVDKEEW 962
Query: 383 KIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSF 441
K+ L + + +IF + VD + + + + A HG DQ R+ + F
Sbjct: 963 KLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 1142
Query: 442 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 501
++G VL+ TD+ ++G+D + VINYD+P + ENY+HRIGR+GR G+ G+A F+
Sbjct: 1143RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT- 1319
Query: 502 NQSETTLLDLKHLLQEAKQRIPPVLAELV 530
E L D++ + +P +AEL+
Sbjct: 1320TDDERMLSDIQKFYNVLIEELPSNVAELL 1406
>TC78036 homologue to PIR|T06824|T06824 translation initiation factor -
garden pea, complete
Length = 1571
Score = 188 bits (477), Expect = 6e-48
Identities = 123/393 (31%), Positives = 201/393 (50%), Gaps = 5/393 (1%)
Frame = +3
Query: 143 IKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPM 202
I +F++M D +L+ + G +P+ IQ + + I+ GRD+I A +G+GKT + L +
Sbjct: 180 IGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTV 359
Query: 203 --IMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLC 260
++ E+ LI+ P+RELA QT +VI L + ++ C
Sbjct: 360 CQVVDTSVREVQ----------ALIVSPTRELASQTEKVI------LTIGDFINIQAHAC 491
Query: 261 IGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDD 320
IGG + + ++ GVH+V TPGR+ DM+ ++ + + L LDE+D ++ GF+D
Sbjct: 492 IGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQ 671
Query: 321 IREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQE--VEYV 378
I +V+ + Q L SAT+P +I + P+ + V R L+ I++ V
Sbjct: 672 IYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKR-DELTLEGIKQFFVAVE 848
Query: 379 KQEAKIVYLLECLQK-TPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYA 437
++E K L + T +IFC K VD + E + A+HG Q ER+
Sbjct: 849 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSAMHGDMPQRERDAI 1028
Query: 438 ISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATT 497
+ F+AG VL+ TDV ++GLD + VINYD+P E Y+HRIGR+GR G+ G+A
Sbjct: 1029MGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN 1208
Query: 498 FINKNQSETTLLDLKHLLQEAKQRIPPVLAELV 530
F+ K+ L D++ +P +A+L+
Sbjct: 1209FV-KSDDIKILRDIEQYYSTQIDEMPMNVADLI 1304
>TC76575 homologue to SP|Q40465|IF4V_TOBAC Eukaryotic initiation factor
4A-11 (eIF-4A-11) (eIF4A-11). [Common tobacco]
{Nicotiana tabacum}, complete
Length = 1627
Score = 185 bits (470), Expect = 4e-47
Identities = 117/390 (30%), Positives = 204/390 (52%), Gaps = 3/390 (0%)
Frame = +1
Query: 144 KNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMI 203
+ F M + +L+ + G +P+ IQ +G+ + G D+I A +G+GKT F ++
Sbjct: 253 ETFDAMGLLENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGIL 432
Query: 204 MMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGG 263
+++ +V + L++ P+RELA+Q +V+ Y ++ C+GG
Sbjct: 433 -----QQLDYGLVQCQA---LVLAPTRELAQQIEKVMRAL------GDYLGVKVHACVGG 570
Query: 264 IDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIRE 323
+R I++ GVH+VV TPGR+ DML ++ + D + LDEAD ++ GF+D I +
Sbjct: 571 TSVREDQRILQTGVHVVVGTPGRVFDMLRRQSLRSDCIKMFVLDEADEMLSRGFKDQIYD 750
Query: 324 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQE--VEYVKQE 381
+F + Q +FSATMP + R + KP+ + V R L+ I++ V K+E
Sbjct: 751 IFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKR-DELTLEGIKQFYVNVDKEE 927
Query: 382 AKIVYLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISS 440
K+ L + + +IF + VD + + + + A HG DQ R+ +
Sbjct: 928 WKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMRE 1107
Query: 441 FKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFIN 500
F++G VL+ TD+ ++G+D + VINYD+P + ENY+HRIGR+GR G+ G+A F+
Sbjct: 1108FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT 1287
Query: 501 KNQSETTLLDLKHLLQEAKQRIPPVLAELV 530
+ L D++ + +P +A+L+
Sbjct: 1288LEDAR-MLADIQKFYNVIVEELPSNVADLL 1374
>TC77435 similar to GP|7211427|gb|AAF40306.1| RNA helicase {Vigna radiata},
partial (67%)
Length = 1828
Score = 180 bits (457), Expect = 1e-45
Identities = 126/405 (31%), Positives = 203/405 (50%), Gaps = 10/405 (2%)
Frame = +1
Query: 116 RRMSKKDCDLIQKQWHIIVNGEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGL 175
++ SK + + I ++ + V ++ P + NF R +P+ LK I PIQ
Sbjct: 346 KKKSKVEDEEIVEEEEVAVKKDD-PNAVSNF---RISEPLRMKLKENKIEALFPIQAMTF 513
Query: 176 PVILSGRDMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEG--PFGLIICPSRELA 233
IL G D++G A TG GKTL FVLP++ G G P +++ P+RELA
Sbjct: 514 NTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKTGYGRVPSVIVLLPTRELA 693
Query: 234 RQTYEVIEEFLLPLKEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAK 293
Q Y E + L L GG +Q +++GV IV+ TPGR+KD + +
Sbjct: 694 NQVYADFELYGSSLG------LSACAVYGGAPYGAQETKLRRGVDIVIGTPGRIKDHIER 855
Query: 294 KKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFK--AQRQTLLFSATMPTKIQNFARS 351
++L + ++ LDEAD ++ +GF DD+ + + + QTLLFSAT+P+ ++ +
Sbjct: 856 GNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVKQISTK 1035
Query: 352 AL-----VKPIIVNVGRAGAANL-DVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENK 405
L ++ N + N+ +I + I ++ C + +IF E K
Sbjct: 1036FLKSDKKTADLVGNEKMKASTNVRHIILPCSSTARAQLIPDIIRCYS-SGGRTIIFAEKK 1212
Query: 406 ADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 465
++ LL G A A+HG Q +RE + F++GK LVAT+VA++GLD D+Q
Sbjct: 1213ESASELAG--LLPG--ARALHGDIQQSQREITLKGFRSGKFMTLVATNVAARGLDINDVQ 1380
Query: 466 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD 510
+I + P ++E Y+HR GRTGR G TG+A + +S ++
Sbjct: 1381LIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNIAKIE 1515
>TC77964 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_90
{Arabidopsis thaliana}, partial (97%)
Length = 1454
Score = 177 bits (450), Expect = 8e-45
Identities = 112/362 (30%), Positives = 191/362 (51%), Gaps = 7/362 (1%)
Frame = +1
Query: 146 FKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMM 205
F+D +L+ + G P+ +Q + +P + G D+I A +G GKT VFVL +
Sbjct: 223 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 402
Query: 206 AMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGID 265
+ VPG+ L++C +RELA Q +E F L P+++ + GG++
Sbjct: 403 -------IDPVPGQVA-ALVLCHTRELAYQICHEVERFSTYL-----PDIKVAVFYGGVN 543
Query: 266 MRSQLEIVKKGV-HIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVD-LGFEDDIRE 323
++ +++K HIVV TPGR+ + K + L N R+ LDE D++++ L D++E
Sbjct: 544 IKVHKDLLKNECPHIVVGTPGRILALTRDKDLGLKNVRHFILDECDKMLESLDMRKDVQE 723
Query: 324 VFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVK---- 379
+F +Q ++FSAT+ +I+ + + P+ + V L + + Y+K
Sbjct: 724 IFKLTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQ-HYIKLQEP 900
Query: 380 -QEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAI 438
+ K+ LL+ L V+IF ++ + ++++ L+ ++ IH G QEER
Sbjct: 901 EKNRKLNDLLDALDFNQ--VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLKRY 1074
Query: 439 SSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 498
FK GK+ +LVATD+ +G+D + VINYDMP + Y+HR+GR GR G G+A TF
Sbjct: 1075KGFKEGKQRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 1254
Query: 499 IN 500
++
Sbjct: 1255VS 1260
>TC86022 homologue to GP|19423939|gb|AAL87312.1 putative RNA helicase
{Arabidopsis thaliana}, partial (89%)
Length = 1982
Score = 174 bits (440), Expect = 1e-43
Identities = 110/386 (28%), Positives = 192/386 (49%), Gaps = 1/386 (0%)
Frame = +2
Query: 146 FKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMM 205
F+D +L + KG +P+PIQ + +P+ L+G D++ A G+GKT F +P +
Sbjct: 500 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEK 679
Query: 206 AMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGID 265
Q+ ++ +V I+ P+RELA QT +V +E + +++ ++ GG
Sbjct: 680 IDQDNNIIQVV--------ILVPTRELALQTSQVCKEL------GKHLQIQVMVTTGGTS 817
Query: 266 MRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVF 325
++ + + + VH++V TPGR+ D+ K L +C L +DEAD+L+ F+ I ++
Sbjct: 818 LKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLI 997
Query: 326 DHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIV 385
RQ L+FSAT P +++F L KP I+N+ + Q +V++ K+
Sbjct: 998 QFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINL-MDELTLKGITQFYAFVEERQKVH 1174
Query: 386 YLLECLQKTP-PPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAG 444
L K +IFC + V+ + + + G IH Q+ R F+ G
Sbjct: 1175CLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG 1354
Query: 445 KKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQS 504
LV TD+ ++G+D + VIN+D P E Y+HR+GR+GR G G+A + +
Sbjct: 1355ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLVT-YED 1531
Query: 505 ETTLLDLKHLLQEAKQRIPPVLAELV 530
L ++ L ++IPP + + +
Sbjct: 1532RFNLYRIEQELGTEIKQIPPFIDQAI 1609
>TC87653 similar to PIR|D96799|D96799 hypothetical protein F22K20.13
[imported] - Arabidopsis thaliana, partial (38%)
Length = 1068
Score = 142 bits (359), Expect(2) = 2e-43
Identities = 92/264 (34%), Positives = 142/264 (52%), Gaps = 4/264 (1%)
Frame = +2
Query: 146 FKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMM 205
F+ + + +K KG PTPIQ + +P+ILSG D++ +A TGSGKT F++PM+
Sbjct: 92 FETLGLNRDVFSGIKRKGYKVPTPIQRKTMPLILSGIDVVAMARTGSGKTAAFLVPMLHR 271
Query: 206 AMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRPLLCIGGID 265
Q VP G GLI+ P+R+LA+QT + +E + +LR L +GG
Sbjct: 272 LNQH------VPQGGVRGLILSPTRDLAQQTLKFTKEL------GHFTDLRVSLLVGGDS 415
Query: 266 MRSQLEIVKKGVHIVVATPGRLKDMLAK-KKMNLDNCRYLTLDEADRLVDLGFEDDIREV 324
M SQ E + + I++ATPGRL L++ M+L Y+ DEAD L +GF + + ++
Sbjct: 416 MESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQI 595
Query: 325 FDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAK- 383
RQTLLFSAT+P+ + FA++ L P +V + + D+ ++QE K
Sbjct: 596 LAQLGENRQTLLFSATLPSALAEFAKAGLRDPRLVRLDLETKISPDLKLVFFTLRQEEKY 775
Query: 384 --IVYLLECLQKTPPPVLIFCENK 405
++YL+ L + LIF K
Sbjct: 776 AALLYLIRELIGSDEQTLIFVSTK 847
Score = 51.6 bits (122), Expect(2) = 2e-43
Identities = 21/66 (31%), Positives = 42/66 (62%)
Frame = +3
Query: 408 VDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 467
V+ ++ L+G+ +G DQ+ R+ ++ F++ K +L+ TD+A++G+D P + +V
Sbjct: 855 VEFLNSLFQLEGIRPSVCYGDMDQDARKEHVARFRSRKTMLLIVTDIAARGIDIPLLDNV 1034
Query: 468 INYDMP 473
IN+D P
Sbjct: 1035INWDFP 1052
>TC92952 homologue to GP|14209595|dbj|BAB56090. putative ethylene-responsive
RNA helicase {Oryza sativa (japonica cultivar-group)},
partial (43%)
Length = 650
Score = 172 bits (436), Expect = 3e-43
Identities = 92/213 (43%), Positives = 129/213 (60%), Gaps = 3/213 (1%)
Frame = +2
Query: 289 DMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNF 348
DML NL YL LDEADR++D+GF+ IR++ + RQTL +SAT P +++
Sbjct: 2 DMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQL 181
Query: 349 ARSALVKPIIVNVGRAGA-ANLDVIQEVEYVKQEAKIVYLLECLQKTPPP--VLIFCENK 405
AR L P V +G AN + Q V+ V ++ K L++ L+ +LIF + K
Sbjct: 182 ARQFLYNPYKVIIGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTK 361
Query: 406 ADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQ 465
D I L + G A++IHG K Q ER++ +S FK+GK ++ ATDVA++GLD D++
Sbjct: 362 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVK 541
Query: 466 HVINYDMPAEIENYVHRIGRTGRCGKTGIATTF 498
+VINYD P +E+YVHRIGRTGR G G A TF
Sbjct: 542 YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTF 640
>TC89900 similar to GP|9759355|dbj|BAB10010.1 RNA helicase-like protein
{Arabidopsis thaliana}, partial (49%)
Length = 1515
Score = 169 bits (427), Expect = 4e-42
Identities = 126/386 (32%), Positives = 189/386 (48%), Gaps = 25/386 (6%)
Frame = +1
Query: 133 IVNGEEIPPPIKN-----FKDMRFP----DPI-LKMLKTKGIVQPTPIQVQGLPVILSGR 182
+VNG ++ I D RF P+ LK +K G + T +Q LPVIL G+
Sbjct: 235 VVNGGDVSSGIVGVTASYLSDSRFDKCSVSPLSLKGVKDAGYEKMTIVQEATLPVILKGK 414
Query: 183 DMIGIAFTGSGKTLVFVLPMIMMAMQEEIMMPIVPGEGP---FGLIICPSRELARQTYEV 239
D++ A TG+GKT+ F+LP I + ++ P G+ L++CP+RELA Q
Sbjct: 415 DVLAKAKTGTGKTVAFLLPSIEVVVKSP---PNNRGQNQTPILVLVVCPTRELACQAAAE 585
Query: 240 IEEFLLPLKEAGYPELRPLLCIGGIDMRS-QLEIVKKGVHIVVATPGRLKDMLAKKK--- 295
+ L +P + + IGG + S Q I K I++ATPGRLKD +A
Sbjct: 586 ATKLL-----KYHPTIGAQVVIGGTSLSSEQKRIQKNPCQILIATPGRLKDHIANTAGFA 750
Query: 296 MNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVK 355
L + L LDEAD+L+D+GF DI ++ QRQTL+FSAT+P + AL K
Sbjct: 751 SKLMGVKALVLDEADQLLDMGFRKDIEKIIASVPKQRQTLMFSATIPDAVHQVCNVALKK 930
Query: 356 PI-IVNVGRAGAANL-DVIQEVEYVKQEAKIVYLLECLQK------TPPPVLIFCENKAD 407
+N + G ++ + + K LL + K VL+FC
Sbjct: 931 DFEFINTVQXGTXETHSQVRXMHLIAPLDKHFSLLSVILKEHIADEVDYKVLVFCTTAMV 1110
Query: 408 VDDIHEYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKKDVLVATDVASKGLDFPDIQHV 467
+ L + I+ K Q R F+ K+ +LV +DV+++G+D+PD+ V
Sbjct: 1111TSLVASLLGKLDLNVREIYSRKKQGFRNRVSDEFRKSKRLILVTSDVSARGVDYPDVSLV 1290
Query: 468 INYDMPAEIENYVHRIGRTGRCGKTG 493
+ +PA+ E Y+HR+GRTGR GK G
Sbjct: 1291VQLGIPADKELYIHRLGRTGRIGKEG 1368
>BG452245 similar to PIR|H86341|H8 hypothetical protein AAD30599.1 [imported]
- Arabidopsis thaliana, partial (18%)
Length = 653
Score = 159 bits (403), Expect = 2e-39
Identities = 89/216 (41%), Positives = 126/216 (58%), Gaps = 3/216 (1%)
Frame = +1
Query: 138 EIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLV 197
++P P+K++ IL +K +P PIQ Q LPVI+SGRD IG+A TGSGKTL
Sbjct: 1 DVPKPVKSWNQTGLTSKILDTIKKANFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 180
Query: 198 FVLPMIMMAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVIEEFLLPLKEAGYPELRP 257
FVLPM+ + P+V G+GP GLI+ P+REL +Q + I +F K G +R
Sbjct: 181 FVLPMLRHIKDQP---PVVVGDGPIGLIMAPTRELVQQIHSDIRKF---TKVMG---IRC 333
Query: 258 LLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCR---YLTLDEADRLVD 314
+ GG + Q+ +K+G IVV TPGR+ D+L + N R YL +DEA R+ D
Sbjct: 334 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEAXRMFD 513
Query: 315 LGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFAR 350
+GFE I + + + RQT+LF AT P +++ AR
Sbjct: 514 MGFEPQITRIVXNIRPXRQTVLFXATXPRQVEILAR 621
>TC82878 similar to PIR|T45677|T45677 ATP-dependent RNA helicase-like
protein - Arabidopsis thaliana, partial (33%)
Length = 1185
Score = 148 bits (374), Expect = 5e-36
Identities = 83/226 (36%), Positives = 128/226 (55%), Gaps = 12/226 (5%)
Frame = +2
Query: 136 GEEIPPPIKNFKDMRFPDPILKMLKTKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKT 195
GE +PPP+ F + + + ++ V+PTP+Q +P+ ++GRD++ A TGSGKT
Sbjct: 521 GENVPPPVNLFAETELHEDLKNNIERCKYVKPTPVQRYAIPIAVAGRDLMACAQTGSGKT 700
Query: 196 LVFVLPMIMMAMQEEIMMPIVPGEG--------PFGLIICPSRELARQTYEVIEEFLLPL 247
F P+I M+E + ++P G P LI+ P+REL+ Q + +F
Sbjct: 701 AAFCFPIISGIMKERLASGLLPRGGGVDSDVAFPTALILSPTRELSCQIHAEACKF---- 868
Query: 248 KEAGYPELRPLLCIGGIDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLD 307
A ++ + GG + QL I+++GV I+VATPGRL D++ +++++L +YL LD
Sbjct: 869 --AHQTGVKIAVVYGGAPIGQQLRILERGVDILVATPGRLVDLIERERVSLKKIKYLALD 1042
Query: 308 EADRLVDLGFEDDIREVFDHF----KAQRQTLLFSATMPTKIQNFA 349
EADR++D+GFE IR + RQTLLFSAT P IQ A
Sbjct: 1043EADRMLDMGFEHQIRNIVQQMHMPPPGDRQTLLFSATFPDNIQKLA 1180
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,495,976
Number of Sequences: 36976
Number of extensions: 207333
Number of successful extensions: 1164
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of query: 589
length of database: 9,014,727
effective HSP length: 101
effective length of query: 488
effective length of database: 5,280,151
effective search space: 2576713688
effective search space used: 2576713688
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Medicago: description of AC144484.10