BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144481.12 - phase: 0 /pseudo
(72 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE124909 similar to GP|4322475|gb| putative MADS box transcripti... 65 6e-12
TC78724 similar to GP|4322475|gb|AAD16052.1| putative MADS box t... 65 6e-12
TC78994 similar to SP|O64645|SOC1_ARATH SUPPRESSOR OF CONSTANS O... 62 3e-11
TC93057 homologue to GP|23194453|gb|AAN15183.1 MADS box protein ... 60 1e-10
TC81292 homologue to PIR|T09700|T09700 MADS-box protein - alfalf... 59 3e-10
TC86876 similar to GP|16973296|emb|CAC80857. C-type MADS box pro... 57 2e-09
TC90653 similar to GP|10835358|gb|AAC13695.2 PTD protein {Populu... 57 2e-09
TC82227 similar to GP|1483232|emb|CAA67969.1 MADS5 protein {Betu... 56 3e-09
TC82622 similar to GP|21739238|emb|CAD40993. OSJNBa0072F16.17 {O... 56 3e-09
TC90799 similar to GP|7672991|gb|AAF66690.1| MADS-box transcript... 55 4e-09
TC84496 similar to GP|1483232|emb|CAA67969.1 MADS5 protein {Betu... 54 9e-09
AL387855 similar to GP|1483230|emb MADS4 protein {Betula pendula... 54 1e-08
TC87621 similar to SP|Q9FVC1|SVP_ARATH SHORT VEGETATIVE PHASE pr... 54 1e-08
TC84438 homologue to GP|1483232|emb|CAA67969.1 MADS5 protein {Be... 51 7e-08
AW688164 similar to GP|3114588|gb|A MADS box protein {Eucalyptus... 40 1e-04
BI272814 PIR|S71757|S71 MADS box protein DEFH200 - garden snapdr... 36 0.002
BE999756 weakly similar to GP|9758603|dbj| gene_id:MDF20.13~unkn... 35 0.007
TC88623 similar to PIR|C84609|C84609 hypothetical protein At2g22... 27 1.1
BG647192 weakly similar to GP|10177406|db cytochrome P-450-like ... 27 1.9
CA859009 homologue to PIR|S00703|S00 photosystem I protein A1 - ... 25 4.3
>BE124909 similar to GP|4322475|gb| putative MADS box transcription factor
ETL {Eucalyptus globulus subsp. globulus}, partial (60%)
Length = 608
Score = 64.7 bits (156), Expect = 6e-12
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ NESN QVTFSK NGL KKA EL LC A +ALIVFS + K++ F ++ ++RY
Sbjct: 178 IENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSSSISKTVERY 354
>TC78724 similar to GP|4322475|gb|AAD16052.1| putative MADS box
transcription factor ETL {Eucalyptus globulus subsp.
globulus}, partial (71%)
Length = 1089
Score = 64.7 bits (156), Expect = 6e-12
Identities = 31/59 (52%), Positives = 40/59 (67%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ NESN QVTFSK NGL KKA EL LC A +ALIVFS + K++ F ++ ++RY
Sbjct: 256 IENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSSSISKTVERY 432
>TC78994 similar to SP|O64645|SOC1_ARATH SUPPRESSOR OF CONSTANS
OVEREXPRESSION 1 protein (Agamous-like MADS box protein
AGL20)., partial (83%)
Length = 946
Score = 62.4 bits (150), Expect = 3e-11
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYL 60
+ N ++ QVTFSK NGL KKA EL LC A +ALIVFSP +++ F ++ I+RY
Sbjct: 84 IENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSILETIERYR 263
Query: 61 SSTTSKQWP 69
S T P
Sbjct: 264 SHTRINNTP 290
>TC93057 homologue to GP|23194453|gb|AAN15183.1 MADS box protein GHMADS-2
{Gossypium hirsutum}, partial (95%)
Length = 858
Score = 60.5 bits (145), Expect = 1e-10
Identities = 29/59 (49%), Positives = 39/59 (65%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N +N QVTF K NGL KKA EL LC A +ALIVFS +++ + + N+ + IDRY
Sbjct: 60 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIDRY 236
>TC81292 homologue to PIR|T09700|T09700 MADS-box protein - alfalfa
(fragment), partial (91%)
Length = 800
Score = 59.3 bits (142), Expect = 3e-10
Identities = 27/59 (45%), Positives = 40/59 (67%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N ++ QVTFSK NGL KKA EL LC A + +++FS + K++ F ++ +VIDRY
Sbjct: 101 IDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTAKLYDFASTSMRSVIDRY 277
>TC86876 similar to GP|16973296|emb|CAC80857. C-type MADS box protein {Malus
x domestica}, partial (85%)
Length = 2050
Score = 56.6 bits (135), Expect = 2e-09
Identities = 27/59 (45%), Positives = 38/59 (63%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N +N QVTF K NGL KKA EL LC A +AL+VFS +++ + + +V I+RY
Sbjct: 119 IENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERY 295
>TC90653 similar to GP|10835358|gb|AAC13695.2 PTD protein {Populus
balsamifera subsp. trichocarpa}, partial (59%)
Length = 845
Score = 56.6 bits (135), Expect = 2e-09
Identities = 28/61 (45%), Positives = 41/61 (66%), Gaps = 2/61 (3%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDT--VIDR 58
+ N +N QVT+SK NG+FKKA EL LC A ++LI+FS + K+ + P + T +ID+
Sbjct: 74 IENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYITPGLSTKKIIDQ 253
Query: 59 Y 59
Y
Sbjct: 254 Y 256
>TC82227 similar to GP|1483232|emb|CAA67969.1 MADS5 protein {Betula
pendula}, partial (68%)
Length = 681
Score = 55.8 bits (133), Expect = 3e-09
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF-GHPNVDTVIDRY 59
+ N+ N QVTFSK +GL KKA E+ LC A +ALI+FS K+F + P ++ +++RY
Sbjct: 160 IENKINRQVTFSKRRSGLLKKAQEISVLCDAEVALIIFSTKGKLFEYSSDPCMEKILERY 339
>TC82622 similar to GP|21739238|emb|CAD40993. OSJNBa0072F16.17 {Oryza
sativa}, partial (78%)
Length = 847
Score = 55.8 bits (133), Expect = 3e-09
Identities = 25/59 (42%), Positives = 40/59 (67%)
Frame = +3
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N ++ QVTFSK GL KKA EL LC A + L++FS + K++ + + ++ +VI+RY
Sbjct: 168 IDNCTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYANTSMKSVIERY 344
>TC90799 similar to GP|7672991|gb|AAF66690.1| MADS-box transcription factor
{Canavalia lineata}, partial (76%)
Length = 653
Score = 55.5 bits (132), Expect = 4e-09
Identities = 25/59 (42%), Positives = 37/59 (62%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N + QVTFSK G+FKKA EL LC A + L++FS + K++ + N+ +I RY
Sbjct: 101 IDNATARQVTFSKRRRGIFKKAEELSILCDAEVGLVIFSTTGKLYEYASSNMKDIITRY 277
>TC84496 similar to GP|1483232|emb|CAA67969.1 MADS5 protein {Betula
pendula}, partial (74%)
Length = 681
Score = 54.3 bits (129), Expect = 9e-09
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF-GHPNVDTVIDRY 59
+ N+ N QVTFSK +GL KKA E+ LC A +ALIVFS K++ + P ++ +++RY
Sbjct: 56 IENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSNKGKLYEYSSDPCMEKILERY 235
>AL387855 similar to GP|1483230|emb MADS4 protein {Betula pendula}, partial
(51%)
Length = 493
Score = 53.9 bits (128), Expect = 1e-08
Identities = 25/60 (41%), Positives = 41/60 (67%), Gaps = 1/60 (1%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGH-PNVDTVIDRY 59
+ N+++ QVTF K GL KKA+E+ LC A +ALI+FS K+F + P+++ +++RY
Sbjct: 83 IENKTSQQVTFFKRRTGLLKKANEISVLCDAQVALIMFSTKGKLFEYSSAPSMEDILERY 262
>TC87621 similar to SP|Q9FVC1|SVP_ARATH SHORT VEGETATIVE PHASE protein.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (65%)
Length = 1322
Score = 53.5 bits (127), Expect = 1e-08
Identities = 25/59 (42%), Positives = 39/59 (65%)
Frame = +2
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRY 59
+ N + QVTFSK GL KKA EL LC A +ALI+FS + K+F + + ++ +++R+
Sbjct: 467 IENSTARQVTFSKRRRGLIKKAEELSVLCDADVALIIFSSTGKLFEYSNLSMREILERH 643
>TC84438 homologue to GP|1483232|emb|CAA67969.1 MADS5 protein {Betula
pendula}, partial (24%)
Length = 702
Score = 51.2 bits (121), Expect = 7e-08
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSEKVFSF 47
+ N+ N QVTFSK +GL KKA E+ LC A +ALI+FS K+F +
Sbjct: 253 IENKINRQVTFSKRRSGLLKKAQEISVLCDAEVALIIFSTKGKLFEY 393
>AW688164 similar to GP|3114588|gb|A MADS box protein {Eucalyptus grandis},
partial (31%)
Length = 549
Score = 40.4 bits (93), Expect = 1e-04
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGA 31
+ N+ N QVTFSK +GL KKA ELC LC A
Sbjct: 37 IENKINRQVTFSKRRSGLLKKAFELCVLCDA 129
>BI272814 PIR|S71757|S71 MADS box protein DEFH200 - garden snapdragon,
partial (16%)
Length = 320
Score = 36.2 bits (82), Expect = 0.002
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLC 29
+ N+ N QVTF+K NGL KKA EL LC
Sbjct: 229 IENKINRQVTFAKRRNGLLKKAYELSVLC 315
>BE999756 weakly similar to GP|9758603|dbj| gene_id:MDF20.13~unknown
protein {Arabidopsis thaliana}, partial (15%)
Length = 534
Score = 34.7 bits (78), Expect = 0.007
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 1 MSNESNLQVTFSKHCNGLFKKASELCTLCGAYIALIVFSPSE 42
++N + + T+ K L KK +E+ TLCG IVF P +
Sbjct: 43 ITNHTARRATYKKRVQSLMKKLNEITTLCGVKACGIVFKPDD 168
>TC88623 similar to PIR|C84609|C84609 hypothetical protein At2g22130
[imported] - Arabidopsis thaliana, partial (24%)
Length = 1960
Score = 27.3 bits (59), Expect = 1.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 18 LFKKASELCTLCGAYIALIVFSPSEKVFSFG 48
LF CT+ Y +V+S + +FSFG
Sbjct: 1839 LFFSREITCTIAVVYFIFLVYSSRQNIFSFG 1931
>BG647192 weakly similar to GP|10177406|db cytochrome P-450-like protein
{Arabidopsis thaliana}, partial (25%)
Length = 726
Score = 26.6 bits (57), Expect = 1.9
Identities = 14/51 (27%), Positives = 23/51 (44%)
Frame = +1
Query: 16 NGLFKKASELCTLCGAYIALIVFSPSEKVFSFGHPNVDTVIDRYLSSTTSK 66
NG++ LC L G + LI + + F +PN +++ T SK
Sbjct: 85 NGVYMAMWHLCCLVGNTMPLIALDTNIFLVDFPYPNTQEA*KKWVWRTNSK 237
>CA859009 homologue to PIR|S00703|S00 photosystem I protein A1 - garden pea
chloroplast, partial (16%)
Length = 823
Score = 25.4 bits (54), Expect = 4.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 34 ALIVFSPSEKVFSFGHPNVDTVIDRYLSSTTSKQW 68
++I+ SP KV P V ++DR T+ +QW
Sbjct: 452 SMIIRSPEPKVKILVDPEVKILVDRDPIKTSFEQW 556
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,567,733
Number of Sequences: 36976
Number of extensions: 30143
Number of successful extensions: 218
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of query: 72
length of database: 9,014,727
effective HSP length: 48
effective length of query: 24
effective length of database: 7,239,879
effective search space: 173757096
effective search space used: 173757096
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)
Medicago: description of AC144481.12