BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144474.14 - phase: 1 /pseudo
(42 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW685155 similar to PIR|G96746|G96 hypothetical protein T9N14.20... 38 0.001
AW684714 homologue to GP|21450882|gb| putative transcriptional r... 33 0.024
TC79561 similar to GP|14194107|gb|AAK56248.1 At1g77260/T14N5_19 ... 31 0.12
BQ079360 homologue to SP|Q40358|PRP_ Repetitive proline-rich cel... 29 0.45
TC88926 similar to GP|7290507|gb|AAF45960.1| peb gene product {D... 27 1.7
TC91055 weakly similar to GP|10440622|gb|AAG16860.1 putative NBS... 27 2.2
TC85301 similar to GP|8096255|dbj|BAA96106.1 TrPRP2 {Trifolium r... 27 2.2
TC85234 homologue to PIR|T50532|T50532 ribosomal protein S27 - A... 27 2.2
BI269233 homologue to SP|Q43564|PRP1 Repetitive proline-rich cel... 27 2.2
TC85304 homologue to SP|Q40358|PRP_MEDSA Repetitive proline-rich... 27 2.2
BQ136687 homologue to SP|Q43564|PRP1 Repetitive proline-rich cel... 27 2.2
TC85303 cell wall proline-rich protein 27 2.2
AL387459 homologue to SP|Q43564|PRP1_ Repetitive proline-rich ce... 27 2.2
TC84035 similar to PIR|A86198|A86198 hypothetical protein [impor... 25 5.0
BQ137365 25 6.5
BF519551 25 6.5
BG582404 homologue to SP|Q40358|PRP_ Repetitive proline-rich cel... 25 6.5
AJ498285 weakly similar to GP|20799090|em ADP-ribosylation facto... 25 8.5
TC80872 similar to GP|22597168|gb|AAN03471.1 unknown protein {Gl... 25 8.5
>AW685155 similar to PIR|G96746|G96 hypothetical protein T9N14.20 [imported]
- Arabidopsis thaliana, partial (1%)
Length = 459
Score = 37.7 bits (86), Expect = 0.001
Identities = 23/40 (57%), Positives = 26/40 (64%)
Frame = +3
Query: 1 ENYITSIVFLHSLLLLHLYQFPNHRCLSQMSRRSTSIATS 40
ENYI I F +SLLL H+YQ+P CL MS ST IA S
Sbjct: 174 ENYIGFISFFYSLLL-HIYQYPYLFCLWNMS**STIIAAS 290
>AW684714 homologue to GP|21450882|gb| putative transcriptional regulator
{Shigella flexneri 2a}, partial (3%)
Length = 286
Score = 33.1 bits (74), Expect = 0.024
Identities = 21/40 (52%), Positives = 25/40 (62%)
Frame = +1
Query: 1 ENYITSIVFLHSLLLLHLYQFPNHRCLSQMSRRSTSIATS 40
EN+I+ F+ SLLL H+ QFPN L QMS ST I S
Sbjct: 13 ENHIS---FIPSLLLQHISQFPNLCYLCQMS*GSTIIVAS 123
>TC79561 similar to GP|14194107|gb|AAK56248.1 At1g77260/T14N5_19
{Arabidopsis thaliana}, partial (33%)
Length = 1092
Score = 30.8 bits (68), Expect = 0.12
Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 10 LHSLLLL-HLYQFPNHRCLSQMSRRSTSIATST 41
LHSLLL H Y FP H LS SRRS + T+T
Sbjct: 73 LHSLLLFNHHYLFP-HLLLSSFSRRSPTTTTTT 168
>BQ079360 homologue to SP|Q40358|PRP_ Repetitive proline-rich cell wall
protein precursor (MSPRP). [Alfalfa] {Medicago sativa},
partial (55%)
Length = 493
Score = 28.9 bits (63), Expect = 0.45
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 3 YITSIVFLHSLLLLHLYQFPNHRCLSQMSRRSTS 36
++ S+ FL L ++ +F NHRC+S R S
Sbjct: 37 FLLSLPFLRVLPIMRSLRFTNHRCISHQLRNPRS 138
>TC88926 similar to GP|7290507|gb|AAF45960.1| peb gene product {Drosophila
melanogaster}, partial (1%)
Length = 1073
Score = 26.9 bits (58), Expect = 1.7
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -3
Query: 15 LLHLYQFPNHRCLSQMSRRSTSIAT 39
LLHL +P+HR SQ+ R S+S++T
Sbjct: 177 LLHLLWYPSHRSSSQL-RSSSSLST 106
>TC91055 weakly similar to GP|10440622|gb|AAG16860.1 putative NBS-LRR type
resistance protein 3' partial {Oryza sativa}, partial
(2%)
Length = 978
Score = 26.6 bits (57), Expect = 2.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 10 LHSLLLLHLYQFPNHRCLSQMSRRSTSIATSTI 42
L SL LH+Y RCL + R TS+ TI
Sbjct: 321 LQSLRTLHIYSCEGLRCLPEGIRHLTSLELLTI 419
>TC85301 similar to GP|8096255|dbj|BAA96106.1 TrPRP2 {Trifolium repens},
partial (92%)
Length = 1318
Score = 26.6 bits (57), Expect = 2.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 3 YITSIVFLHSLLLLHLYQFPNHRCLSQMSRRSTS 36
++ + FL L ++ +F NHRC+S R S
Sbjct: 57 FLLYLPFLRVLPIMRSLRFTNHRCISHQLRNPRS 158
>TC85234 homologue to PIR|T50532|T50532 ribosomal protein S27 - Arabidopsis
thaliana, complete
Length = 813
Score = 26.6 bits (57), Expect = 2.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 9 FLHSLLLLHLYQFPNHRCLSQMSRRSTSIATST 41
+LH++L+ LY + H C S++SR I ST
Sbjct: 223 YLHNMLVCLLYNYIIHICSSRVSRVCDLIHLST 321
>BI269233 homologue to SP|Q43564|PRP1 Repetitive proline-rich cell wall
protein 1 precursor. [Barrel medic] {Medicago
truncatula}, partial (98%)
Length = 635
Score = 26.6 bits (57), Expect = 2.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 3 YITSIVFLHSLLLLHLYQFPNHRCLSQMSRRSTS 36
++ + FL L ++ +F NHRC+S R S
Sbjct: 36 FLLYLPFLRVLPIMRSLRFTNHRCISHQLRNPRS 137
>TC85304 homologue to SP|Q40358|PRP_MEDSA Repetitive proline-rich cell
wall protein precursor (MSPRP). [Alfalfa] {Medicago
sativa}, partial (82%)
Length = 798
Score = 26.6 bits (57), Expect = 2.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 3 YITSIVFLHSLLLLHLYQFPNHRCLSQMSRRSTS 36
++ + FL L ++ +F NHRC+S R S
Sbjct: 45 FLLYLPFLRVLPIMRSLRFTNHRCISHQLRNPRS 146
>BQ136687 homologue to SP|Q43564|PRP1 Repetitive proline-rich cell wall
protein 1 precursor. [Barrel medic] {Medicago
truncatula}, partial (51%)
Length = 526
Score = 26.6 bits (57), Expect = 2.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 3 YITSIVFLHSLLLLHLYQFPNHRCLSQMSRRSTS 36
++ + FL L ++ +F NHRC+S R S
Sbjct: 29 FLLYLPFLRVLPIMRSLRFTNHRCISHQLRNPRS 130
>TC85303 cell wall proline-rich protein
Length = 1157
Score = 26.6 bits (57), Expect = 2.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 3 YITSIVFLHSLLLLHLYQFPNHRCLSQMSRRSTS 36
++ + FL L ++ +F NHRC+S R S
Sbjct: 84 FLLYLPFLRVLPIMRSLRFTNHRCISHQLRNPRS 185
>AL387459 homologue to SP|Q43564|PRP1_ Repetitive proline-rich cell wall
protein 1 precursor. [Barrel medic] {Medicago
truncatula}, partial (44%)
Length = 471
Score = 26.6 bits (57), Expect = 2.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 3 YITSIVFLHSLLLLHLYQFPNHRCLSQMSRRSTS 36
++ + FL L ++ +F NHRC+S R S
Sbjct: 41 FLLYLPFLRVLPIMRSLRFTNHRCISHQLRNPRS 142
>TC84035 similar to PIR|A86198|A86198 hypothetical protein [imported] -
Arabidopsis thaliana, partial (18%)
Length = 768
Score = 25.4 bits (54), Expect = 5.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 3 YITSIVFLHSLLLLHLYQFPNHRCLSQ 29
Y+ SIV LH +L Y + NH SQ
Sbjct: 647 YLGSIVTLHQTRMLRNYHYQNH*MKSQ 567
>BQ137365
Length = 983
Score = 25.0 bits (53), Expect = 6.5
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = -2
Query: 3 YITSIVFLHSLLLLHLYQFPNHRCLSQMSRRSTSIATST 41
YIT + + S+L+L LYQ + + +R S ATST
Sbjct: 448 YITKLEYQLSILILSLYQLSLYT**NNAARIVRSHATST 332
>BF519551
Length = 476
Score = 25.0 bits (53), Expect = 6.5
Identities = 6/19 (31%), Positives = 16/19 (83%)
Frame = -2
Query: 1 ENYITSIVFLHSLLLLHLY 19
EN++ S++F++++ L+H +
Sbjct: 472 ENFLPSVIFIYNMTLIHCF 416
>BG582404 homologue to SP|Q40358|PRP_ Repetitive proline-rich cell wall
protein precursor (MSPRP). [Alfalfa] {Medicago sativa},
partial (85%)
Length = 691
Score = 25.0 bits (53), Expect = 6.5
Identities = 10/22 (45%), Positives = 13/22 (58%)
Frame = +3
Query: 9 FLHSLLLLHLYQFPNHRCLSQM 30
FL L ++ QF NHRC S +
Sbjct: 57 FLRVLPIMRSLQFTNHRCTSHL 122
>AJ498285 weakly similar to GP|20799090|em ADP-ribosylation factor guanine
nucleotide-exchange factor 6 {Homo sapiens}, partial
(2%)
Length = 568
Score = 24.6 bits (52), Expect = 8.5
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = +2
Query: 6 SIVFLHSLLLLHLYQFPNHRCL 27
S++ LH L LLH + P ++CL
Sbjct: 251 SLLMLHHLQLLHRHLPPENQCL 316
>TC80872 similar to GP|22597168|gb|AAN03471.1 unknown protein {Glycine
max}, partial (39%)
Length = 786
Score = 24.6 bits (52), Expect = 8.5
Identities = 9/22 (40%), Positives = 12/22 (53%)
Frame = +1
Query: 3 YITSIVFLHSLLLLHLYQFPNH 24
YIT ++ L+ LL H Y H
Sbjct: 61 YITFVIILNQFLLFHSYYLSKH 126
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.328 0.134 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,914,197
Number of Sequences: 36976
Number of extensions: 22005
Number of successful extensions: 373
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of query: 42
length of database: 9,014,727
effective HSP length: 18
effective length of query: 24
effective length of database: 8,349,159
effective search space: 200379816
effective search space used: 200379816
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)
Medicago: description of AC144474.14