TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144459.10 + phase: 0 
         (167 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93851 weakly similar to GP|21734794|gb|AAM76972.1 reduced vern...   209  4e-55
TC76370 similar to GP|21734794|gb|AAM76972.1 reduced vernalizati...    99  8e-22
TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalizati...    90  4e-19
TC79503 weakly similar to GP|21734794|gb|AAM76972.1 reduced vern...    87  4e-18
TC79504 weakly similar to GP|21734794|gb|AAM76972.1 reduced vern...    83  4e-17
TC79718                                                                59  7e-10
TC81996 similar to GP|20145851|emb|CAD29616. auxin response fact...    59  9e-10
TC81461                                                                59  1e-09
BG646843 similar to GP|20145851|emb auxin response factor 36 {Ar...    58  2e-09
TC88572 weakly similar to GP|20145851|emb|CAD29616. auxin respon...    57  5e-09
AW573956 similar to GP|20145851|emb auxin response factor 36 {Ar...    56  6e-09
TC89357 similar to GP|20145851|emb|CAD29616. auxin response fact...    52  1e-07
BI309428 weakly similar to GP|21734794|gb| reduced vernalization...    51  2e-07
TC85081 similar to GP|21240658|gb|AAM44369.1 putative protein co...    48  2e-06
BF003537                                                               37  0.003
CA990321 weakly similar to PIR|S03170|S03 homeotic protein cut -...    36  0.006
TC83295 similar to SP|O81117|C941_VICSA Cytochrome P450 94A1 (EC...    30  0.45
BQ144301 similar to GP|15277263|db alternative name: G2~unknown ...    30  0.59
BQ135572                                                               29  0.77
TC92655 weakly similar to GP|20146508|dbj|BAB89287. contains EST...    28  1.3

>TC93851 weakly similar to GP|21734794|gb|AAM76972.1 reduced vernalization
           response 1 {Arabidopsis thaliana}, partial (9%)
          Length = 710

 Score =  209 bits (532), Expect = 4e-55
 Identities = 101/145 (69%), Positives = 115/145 (78%), Gaps = 1/145 (0%)
 Frame = +1

Query: 10  RIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNK-WQEFVEYYSIGYGCF 68
           RIP+ FIT FGNEL NVAT+TVPDG  W+M+LKK GE+V+FCNK WQ+F EYYS+ YGCF
Sbjct: 274 RIPENFITMFGNELENVATVTVPDGCDWEMDLKKCGEDVYFCNKEWQQFAEYYSLRYGCF 453

Query: 69  ISFKYEGNSKFSVIIFDATSVEISYPFETPSTNGEPKTNYPSSRKRSKVETCERLRKKVK 128
           +SF+YEGNS FSVIIFDATSVEI YP +TPST+GE  T  P   KRSKVET E   KKVK
Sbjct: 454 LSFRYEGNSNFSVIIFDATSVEICYPLKTPSTSGETNTECPRPMKRSKVETSESPGKKVK 633

Query: 129 NMSKYASKRVEDAAKELNPNNPYFR 153
           +MS YA KR EDAA   NP NP+FR
Sbjct: 634 SMSNYAYKRAEDAANAFNPKNPHFR 708


>TC76370 similar to GP|21734794|gb|AAM76972.1 reduced vernalization response
           1 {Arabidopsis thaliana}, partial (36%)
          Length = 1840

 Score = 99.0 bits (245), Expect = 8e-22
 Identities = 50/124 (40%), Positives = 76/124 (60%), Gaps = 2/124 (1%)
 Frame = +1

Query: 10  RIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFI 69
           RIPD F+ ++G +L+ +AT+TVPDG VW++ LKK    ++F + WQ+FV+ Y+IG G F+
Sbjct: 190 RIPDNFLRKYGAQLSTIATLTVPDGTVWRLGLKKVDNRIWFVDGWQDFVQRYAIGIGYFL 369

Query: 70  SFKYEGNSKFSVIIFDATSVEISYPFETPS-TNGEPKTNY-PSSRKRSKVETCERLRKKV 127
            F YEGNS F V IF+ ++ E++Y     S T G    NY P       +++ E L    
Sbjct: 370 VFTYEGNSNFIVHIFNMSTAELNYQSAMRSRTEGPCYANYHPIFEDIEDIDSFEFLDSSP 549

Query: 128 KNMS 131
            N++
Sbjct: 550 SNLT 561



 Score = 28.1 bits (61), Expect = 1.7
 Identities = 15/69 (21%), Positives = 27/69 (38%)
 Frame = +1

Query: 4    YHFLMQRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSI 63
            Y   +  +P  F  +  N ++    + + DGR W +    +G        W EF    ++
Sbjct: 1051 YRGCIMYLPSCFAEKNLNGVSGFIKLQISDGRQWPVRCLYKGGRAKLSQGWYEFTLENNL 1230

Query: 64   GYGCFISFK 72
            G G    F+
Sbjct: 1231 GEGDICVFE 1257


>TC78901 similar to GP|21734794|gb|AAM76972.1 reduced vernalization response
           1 {Arabidopsis thaliana}, partial (37%)
          Length = 1760

 Score = 90.1 bits (222), Expect = 4e-19
 Identities = 50/143 (34%), Positives = 76/143 (52%), Gaps = 5/143 (3%)
 Frame = +2

Query: 10  RIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFI 69
           R+PD+F+ ++G +++   T+TVPDG VW++ +KK     +F + W EFV+ YSI  G  +
Sbjct: 266 RLPDDFMRKYGGDISPTVTLTVPDGSVWRVIMKKVDNKFWFLDGWNEFVQNYSISTGYLL 445

Query: 70  SFKYEGNSKFSVIIFDATSVEISYPFETPSTN-----GEPKTNYPSSRKRSKVETCERLR 124
            FKYEG S F+V IF   + EI+Y      +N     G+  T +        VE  E   
Sbjct: 446 VFKYEGKSHFTVNIFSLPTSEINYQSPAQRSNEASLFGKRLTIFEEMEDEDSVEIMESSP 625

Query: 125 KKVKNMSKYASKRVEDAAKELNP 147
            K+   S   +K V  +A +L P
Sbjct: 626 TKL-TPSLLQNKAVSGSADKLTP 691



 Score = 29.3 bits (64), Expect = 0.77
 Identities = 20/89 (22%), Positives = 34/89 (37%), Gaps = 2/89 (2%)
 Frame = +2

Query: 4    YHFLMQRIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSI 63
            Y   +  +P  F  +  N ++ +  + + DGR W +    RG        W EF    ++
Sbjct: 1118 YRGCIMYLPSCFAEKNLNGVSGIIKLQISDGRQWPVRCLYRGGRAKLSQGWFEFSLENNL 1297

Query: 64   GYGCFISFKYEGNSK--FSVIIFDATSVE 90
            G G    F+     +    V +F  T  E
Sbjct: 1298 GEGDVCVFELVATKEVVLQVTVFRITEDE 1384


>TC79503 weakly similar to GP|21734794|gb|AAM76972.1 reduced vernalization
           response 1 {Arabidopsis thaliana}, partial (6%)
          Length = 910

 Score = 86.7 bits (213), Expect = 4e-18
 Identities = 43/101 (42%), Positives = 61/101 (59%), Gaps = 1/101 (0%)
 Frame = +3

Query: 10  RIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFI 69
           RIPD F+ + G +L+ + T+TVPDG VW + LKK    + F + WQ+FV+ YSIG G F+
Sbjct: 165 RIPDNFLRKHGAQLSTITTLTVPDGTVWHLRLKKVDNQICFVDGWQDFVQRYSIGIG*FL 344

Query: 70  SFKYEGNSKFSVIIFDATSVEISYPFETPS-TNGEPKTNYP 109
            F  EGN  F V +F+ ++ E++Y     S T G     YP
Sbjct: 345 VFTCEGNLNFIVHMFNISTAELNYQSAMRSHTEGPCH*RYP 467


>TC79504 weakly similar to GP|21734794|gb|AAM76972.1 reduced vernalization
           response 1 {Arabidopsis thaliana}, partial (26%)
          Length = 695

 Score = 83.2 bits (204), Expect = 4e-17
 Identities = 38/84 (45%), Positives = 57/84 (67%)
 Frame = +1

Query: 10  RIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFI 69
           RIPD F+ + G++L+ VAT+T+P G VW++ LKK   ++ F + WQ+FV+ YSIG G  +
Sbjct: 151 RIPDNFLRKHGDQLSTVATLTIPGGSVWRLGLKKVDNSICFVDGWQDFVQRYSIGIGYLL 330

Query: 70  SFKYEGNSKFSVIIFDATSVEISY 93
            F YEG S F + IF   + E++Y
Sbjct: 331 VFIYEGRSNFIIHIF--RTAELNY 396


>TC79718 
          Length = 1377

 Score = 59.3 bits (142), Expect = 7e-10
 Identities = 29/78 (37%), Positives = 40/78 (51%)
 Frame = +2

Query: 11  IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFIS 70
           +P  F      +L    T+  P G VW + L  R   V+F + WQ+FV  +S+    F+ 
Sbjct: 191 LPKTFSDNLKKKLPENVTLKGPSGVVWNIGLTTRDNTVYFVDGWQQFVNDHSLKENDFLV 370

Query: 71  FKYEGNSKFSVIIFDATS 88
           FKY G S F V+IFD  S
Sbjct: 371 FKYNGESLFEVLIFDGNS 424


>TC81996 similar to GP|20145851|emb|CAD29616. auxin response factor 36
           {Arabidopsis thaliana}, partial (15%)
          Length = 700

 Score = 58.9 bits (141), Expect = 9e-10
 Identities = 29/75 (38%), Positives = 40/75 (52%)
 Frame = +3

Query: 11  IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFIS 70
           +P  F     N+L    T+  P G VW + L  R   V+F + WQ FV+ +S+    F+ 
Sbjct: 147 LPKTFSDNLKNKLPENVTLKGPSGVVWNIGLTTRDYTVYFTDGWQRFVKDHSLKENDFLV 326

Query: 71  FKYEGNSKFSVIIFD 85
           FKY G S F V+IFD
Sbjct: 327 FKYNGESLFEVLIFD 371


>TC81461 
          Length = 745

 Score = 58.5 bits (140), Expect = 1e-09
 Identities = 29/78 (37%), Positives = 40/78 (51%)
 Frame = +1

Query: 11  IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFIS 70
           +P  F      +L    T+  P G VW + L    + V+F N WQ+FV  +S+    F+ 
Sbjct: 238 LPKTFSDNLKKKLPENVTLKGPSGVVWNIGLTTIDDTVYFTNGWQQFVNDHSLKESDFLF 417

Query: 71  FKYEGNSKFSVIIFDATS 88
           FKY G S F V+IFD  S
Sbjct: 418 FKYNGESLFEVLIFDGRS 471


>BG646843 similar to GP|20145851|emb auxin response factor 36 {Arabidopsis
           thaliana}, partial (5%)
          Length = 758

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 28/78 (35%), Positives = 40/78 (50%)
 Frame = +3

Query: 11  IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFIS 70
           +P  F      +L    T+  P G VW + L  R + ++F N WQ FV+ +S+    F+ 
Sbjct: 231 LPKTFSDNLKKKLPGNVTLKGPSGVVWNVGLTARDDTIYFTNGWQRFVKDHSLKENDFLV 410

Query: 71  FKYEGNSKFSVIIFDATS 88
           FKY G S F V+IF   S
Sbjct: 411 FKYNGESLFEVLIFHGDS 464


>TC88572 weakly similar to GP|20145851|emb|CAD29616. auxin response factor
           36 {Arabidopsis thaliana}, partial (21%)
          Length = 1755

 Score = 56.6 bits (135), Expect = 5e-09
 Identities = 27/78 (34%), Positives = 41/78 (51%)
 Frame = +2

Query: 11  IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFIS 70
           +P  F      +L    T+  P G VW + L  R + V+F + W+ F++ +S+    F+ 
Sbjct: 608 LPKTFSDNLKKKLPENVTLKGPSGVVWNIGLTTRDDIVYFVDGWKRFIKDHSLKQNDFLV 787

Query: 71  FKYEGNSKFSVIIFDATS 88
           FKY G S F V+IFD  S
Sbjct: 788 FKYNGKSLFEVLIFDGDS 841



 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 27/78 (34%), Positives = 41/78 (51%)
 Frame = +2

Query: 11  IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFIS 70
           +P  F     N+L    T+  P G VW + L  R + ++  + WQ+FV+ +S+    F+ 
Sbjct: 137 LPKTFSDNLKNKLPANVTLKGPSGVVWDIGLTTRDDTIYSTDGWQQFVKDHSLKQNDFLV 316

Query: 71  FKYEGNSKFSVIIFDATS 88
           FKY G S F V+IF   S
Sbjct: 317 FKYNGESLFEVLIFHGES 370


>AW573956 similar to GP|20145851|emb auxin response factor 36 {Arabidopsis
           thaliana}, partial (15%)
          Length = 555

 Score = 56.2 bits (134), Expect = 6e-09
 Identities = 27/75 (36%), Positives = 38/75 (50%)
 Frame = +2

Query: 11  IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFIS 70
           +P  F      +L    T+  P G VW + L  R   V+F   W+ FV+ +S+    F+ 
Sbjct: 209 LPKTFSDNLKKKLPENVTLKGPSGAVWDIGLTTRDNTVYFVGGWERFVKDHSLKENDFLV 388

Query: 71  FKYEGNSKFSVIIFD 85
           FKY G S F V+IFD
Sbjct: 389 FKYNGESLFEVLIFD 433


>TC89357 similar to GP|20145851|emb|CAD29616. auxin response factor 36
           {Arabidopsis thaliana}, partial (21%)
          Length = 843

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = +3

Query: 11  IPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFVEYYSIGYGCFIS 70
           +P  F      +L     +  P G  W + L  R    +F   W++FV+ +S+    F+ 
Sbjct: 267 LPKTFSNNVKKKLPENVVLKGPGGVTWNIGLTSRDGTFYFTQGWEQFVKDHSLKENDFLF 446

Query: 71  FKYEGNSKFSVIIFDATS 88
           FKY G S F V+IFD  S
Sbjct: 447 FKYNGESLFEVLIFDGKS 500


>BI309428 weakly similar to GP|21734794|gb| reduced vernalization response 1
           {Arabidopsis thaliana}, partial (6%)
          Length = 710

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 28/83 (33%), Positives = 42/83 (49%), Gaps = 2/83 (2%)
 Frame = +1

Query: 57  FVEYYSIGYGCFISFKYEGNSKFSVIIFDATSVEISYPFETPSTNGEPKTNYPSSRKRSK 116
           F E YS+G+GC + F+Y+G  KF V+I    ++EI Y  +T   + +   N   S     
Sbjct: 4   FTENYSLGHGCLVVFEYKGTFKFDVVILGKNALEIDY--DTSCDSDDENDNVDHSDDDES 177

Query: 117 VETCERL--RKKVKNMSKYASKR 137
           VE  +    RKK +  S + S R
Sbjct: 178 VEILDEWLNRKKARQRSPFVSSR 246


>TC85081 similar to GP|21240658|gb|AAM44369.1 putative protein contains
           similarity to topoisomerase-related function protein,
           partial (1%)
          Length = 823

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 33/142 (23%), Positives = 64/142 (44%), Gaps = 13/142 (9%)
 Frame = +3

Query: 10  RIPDEFITRFGNELNNVATITV--PDGRVWKMELKKRGENVFFCN-KWQEFVEYYSIGYG 66
           ++P + +   G E    A+I +    G  W++++ K+  +++  N  WQ+F++  S+G  
Sbjct: 165 KVPPKIVMDLGEEFWKKASIILVCSSGEKWEVKILKKANDIYVRNFGWQKFLKDNSVGLE 344

Query: 67  CFISFKYEGNSKFSVIIFDATSVE----------ISYPFETPSTNGEPKTNYPSSRKRSK 116
            F+ F Y G + F+V I+    +E          ++ P       G P+ N P+  +  K
Sbjct: 345 EFLVFTYIGENLFNVEIYGKNGLEKPCFKKKQEVVAAPIVAKRKRGRPRRN-PAGVEEEK 521

Query: 117 VETCERLRKKVKNMSKYASKRV 138
            E    +  K K + +    RV
Sbjct: 522 EEAAPTIVAKTKMVQRKYPSRV 587


>BF003537 
          Length = 397

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 14/49 (28%), Positives = 27/49 (54%)
 Frame = +3

Query: 10  RIPDEFITRFGNELNNVATITVPDGRVWKMELKKRGENVFFCNKWQEFV 58
           R+PD F+ +       + ++T P G  W++ L ++  ++FF + W  FV
Sbjct: 231 RVPDGFVHQMEGATCGLVSLTGPSGNTWQVRLVEQDNHLFFHHGWSTFV 377


>CA990321 weakly similar to PIR|S03170|S03 homeotic protein cut - fruit fly
           (Drosophila melanogaster), partial (2%)
          Length = 451

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +3

Query: 5   HFLMQRIPDEFITRFGNELNNVATITVPD--GRVWKMELKKRGENVFFCNKWQEFVEYYS 62
           H    RIP+ F+    ++   +    + D  GR W ++ +  G+ ++F   W++F E  S
Sbjct: 54  HTERMRIPNAFVNLMRSKRKVIKDFILRDRRGRDWHVKARLIGDELYFDGGWKQFREENS 233

Query: 63  IGYGCFISFKYEGNSKFSVIIFDATSV 89
           +    F+ F +  N+ F   I + +S+
Sbjct: 234 LEEDDFLVFTHIENTVFRFKILELSSM 314


>TC83295 similar to SP|O81117|C941_VICSA Cytochrome P450 94A1 (EC 1.14.-.-)
           (P450-dependent fatty acid omega-hydroxylase)., partial
           (62%)
          Length = 971

 Score = 30.0 bits (66), Expect = 0.45
 Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
 Frame = +2

Query: 54  WQEFVEYYSIGYGCFISFKYEGN--------SKFSVIIFDATSVEISYPFETPSTNGEPK 105
           +Q+ ++ ++    C I+F ++          +KF+    DAT +  S  F  P       
Sbjct: 221 FQDILQRFTFDNICKIAFGFDPEYLTPSAKRTKFAQAFEDATEIS-SRRFRLPLPV---- 385

Query: 106 TNYPSSRKRSKVETCERLRKKVKNMSKYASKRVEDAAKELNPNN 149
                 +KR  + + +RLR+ V  + +YA+K V +  KEL  N+
Sbjct: 386 --IWKMKKRFNIGSEKRLREAVTEIREYANKIVREKKKELKEND 511


>BQ144301 similar to GP|15277263|db alternative name: G2~unknown function
           {Homo sapiens}, partial (1%)
          Length = 1250

 Score = 29.6 bits (65), Expect = 0.59
 Identities = 10/24 (41%), Positives = 18/24 (74%)
 Frame = -3

Query: 94  PFETPSTNGEPKTNYPSSRKRSKV 117
           P +TP +N +PKT+ P+ ++RS +
Sbjct: 603 PTKTPQSNNKPKTSAPNKKRRSPI 532


>BQ135572 
          Length = 759

 Score = 29.3 bits (64), Expect = 0.77
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 46  ENVFFCNKWQEFVEYY--SIGYGCFIS 70
           +NV +CN W +   ++   +GY CFIS
Sbjct: 649 DNVLYCNAWSDRSTFFLEMLGYPCFIS 569


>TC92655 weakly similar to GP|20146508|dbj|BAB89287. contains ESTs
          AU088609(C60583) C97627(C60583)~similar to Arabidopsis
          thaliana chromosome1 At1g34320~, partial (7%)
          Length = 649

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 11/40 (27%)
 Frame = +1

Query: 45 GENVFFCNK-----WQEFVEYYSIGYGC------FISFKY 73
          G N+  C+K     W +F+ Y+ I Y C      FIS K+
Sbjct: 28 GTNIHTCSKLLQHFWSQFISYHKIRYACHQRVISFISTKF 147


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,574,802
Number of Sequences: 36976
Number of extensions: 72698
Number of successful extensions: 438
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of query: 167
length of database: 9,014,727
effective HSP length: 89
effective length of query: 78
effective length of database: 5,723,863
effective search space: 446461314
effective search space used: 446461314
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)