TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144431.4 - phase: 0 /pseudo
         (1510 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93756 similar to GP|20160860|dbj|BAB89799. putative DNA polyme...    92  2e-18
TC79612 similar to SP|O04979|LON1_SPIOL Lon protease homolog 1  ...    32  1.4
AW171629 weakly similar to GP|14718995|gb| ceramide glucosyltran...    32  1.9
TC92154                                                                32  1.9
TC78189 homologue to GP|14485513|emb|CAC42087. putative NAC doma...    32  2.4
TC78638 similar to GP|22087278|gb|AAM90909.1 p44/SSL1-like prote...    32  2.4
TC77900 similar to GP|9759182|dbj|BAB09797.1 ATP-dependent Clp p...    30  5.4
TC82248 similar to GP|15216028|emb|CAC51424. amino acid permease...    30  9.2
TC82271 similar to GP|18491137|gb|AAL69537.1 AT5g45420/MFC19_9 {...    26  9.5

>TC93756 similar to GP|20160860|dbj|BAB89799. putative DNA polymerase alpha
            catalytic subunit {Oryza sativa (japonica
            cultivar-group)}, partial (1%)
          Length = 408

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 46/46 (100%), Positives = 46/46 (100%)
 Frame = +2

Query: 1465 EAKSRIPIEKELIKIRPIVDLAASTIQKIRDRCAFGWVKLQDLVVA 1510
            EAKSRIPIEKELIKIRPIVDLAASTIQKIRDRCAFGWVKLQDLVVA
Sbjct: 2    EAKSRIPIEKELIKIRPIVDLAASTIQKIRDRCAFGWVKLQDLVVA 139


>TC79612 similar to SP|O04979|LON1_SPIOL Lon protease homolog 1
           mitochondrial precursor (EC 3.4.21.-). [Spinach]
           {Spinacia oleracea}, partial (19%)
          Length = 768

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
 Frame = -3

Query: 567 SKITLVNPPVVVTAI-----NLKTTINEKQNINEIVSASVVSCNMVKIDTPMLASEWKRP 621
           SK T V PPV+         ++   +N + NI +  S S  S +++ I    + + W  P
Sbjct: 763 SKRTFVLPPVLCXCSRTEISSMAVALN*RDNIMKSGSCSTCSISVLVISREDILAVWYVP 584

Query: 622 GMLTHFTV-----IRKLDGNIFPMGFNTEVTDRNIKAGSNVLC 659
            + + +T+      R       P+GF+T +   N +A + +LC
Sbjct: 583 LVFSSWTLNLHKPSRTTIYVTLPLGFSTPLDKCNARAATPLLC 455


>AW171629 weakly similar to GP|14718995|gb| ceramide glucosyltransferase
            {Gossypium arboreum}, partial (10%)
          Length = 491

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
 Frame = +2

Query: 1053 LVQNNLNLEVIYGDTDSIMIYSGLDDIAKAT--------------SISKKVIQEVNKKYR 1098
            L+ +NL++ +++G   ++   S L ++ +A               +  K  + EV+    
Sbjct: 5    LIFHNLSIGLVFGTI*NMEKLSRLKELKEAKI*VQFSQIWEGNIYTERKGCLPEVHSLVL 184

Query: 1099 CLEIDLDGLYKRMLLLKKKKYAAVKVQ 1125
            CLE+ L+G+ ++ L+ ++K  AAVK++
Sbjct: 185  CLEVLLNGINRKNLITRRKLQAAVKLR 265


>TC92154 
          Length = 332

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -1

Query: 5   DGSSRKRRPTRGPDATARSQALELLRSRRSNGPRSTTTPQIRLENPIYDTIPEDEYTA 62
           D   + ++PTR  D T ++    +  ++RS G  +TTT  IR   P Y+    DEYTA
Sbjct: 302 DHDVKIQQPTRLFDQTRQT----MCSAKRSLGHDTTTTRTIRSPTPSYELEVGDEYTA 141


>TC78189 homologue to GP|14485513|emb|CAC42087. putative NAC domain protein
           {Solanum tuberosum}, partial (56%)
          Length = 1556

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 16/46 (34%), Positives = 23/46 (49%)
 Frame = +2

Query: 862 PDKFSNYAKETKLTKRRVTHGVDDGNFDDADINDANYHNDASESDH 907
           P  FS +  ETK   +   +G DD  + D   +   +H D+S SDH
Sbjct: 614 PPMFSQFENETKPHIKMNMNGQDDQLYTDTSDSVPLFHTDSSGSDH 751


>TC78638 similar to GP|22087278|gb|AAM90909.1 p44/SSL1-like protein
            {Arabidopsis thaliana}, partial (85%)
          Length = 2060

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
 Frame = +2

Query: 1031 YAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKATSISKKVI 1090
            + K L   +   G   LQ+ ++LV +NLN    YG  + +++YS L        +  + I
Sbjct: 803  HIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPGDLM--ETI 976

Query: 1091 QEVNK-KYRCLEIDLDGLYKRMLLLK 1115
            Q+  K K RC  I   GL   M + K
Sbjct: 977  QKCKKSKIRCSVI---GLAAEMFICK 1045


>TC77900 similar to GP|9759182|dbj|BAB09797.1 ATP-dependent Clp protease
           regulatory subunit CLPX {Arabidopsis thaliana}, partial
           (61%)
          Length = 2144

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 319 EVVCYGWMAGG*EWWRWRWGGKCC* 343
           E+ C+ W      WWRWRW  +CC*
Sbjct: 557 EL*CFWW------WWRWRW-WRCC* 610


>TC82248 similar to GP|15216028|emb|CAC51424. amino acid permease AAP3 {Vicia
            faba var. minor}, partial (29%)
          Length = 779

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 16/45 (35%), Positives = 24/45 (52%), Gaps = 1/45 (2%)
 Frame = -3

Query: 1407 TTRSVSFRLVGDSERGTVCP-NYPRCNGHLNRKYTEADLYKQLSY 1450
            TT  +  RLV  + +  VC  N+ RCN H N  Y  + +Y ++ Y
Sbjct: 201  TTSPLGSRLVESAVQLGVCK*NHCRCNSHFNTIYIHSYIYIKILY 67


>TC82271 similar to GP|18491137|gb|AAL69537.1 AT5g45420/MFC19_9 {Arabidopsis
           thaliana}, partial (43%)
          Length = 1116

 Score = 26.2 bits (56), Expect(2) = 9.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 120 CFTDQASFCFFFCG*IISCCCYDGRIKSFVDVYFC*F*EK 159
           CF   +  C +  G   SCCC  G IKS +    C*  E+
Sbjct: 773 CFESLSERCCYEMG--ESCCCCSGEIKSCLYEKNC*IEER 886



 Score = 21.6 bits (44), Expect(2) = 9.5
 Identities = 13/32 (40%), Positives = 17/32 (52%), Gaps = 3/32 (9%)
 Frame = +1

Query: 79  RRIWL*R*R---RRRGLVQNRFFPFLRRRIRW 107
           RR+W    R   RRR +++ R   F RR  RW
Sbjct: 586 RRVW*RNQRSWERRRLMIRIRMSSF*RREKRW 681


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.337    0.147    0.483 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,280,633
Number of Sequences: 36976
Number of extensions: 715031
Number of successful extensions: 6343
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3574
Number of HSP's successfully gapped in prelim test: 255
Number of HSP's that attempted gapping in prelim test: 2543
Number of HSP's gapped (non-prelim): 4175
length of query: 1510
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1401
effective length of database: 4,984,343
effective search space: 6983064543
effective search space used: 6983064543
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 65 (29.6 bits)