TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144430.7 + phase: 0 /pseudo
         (491 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG453335 weakly similar to GP|18071369|g putative gag-pol polypr...   100  1e-21
BG648607 weakly similar to PIR|F96614|F96 probable copia-type po...    28  6.1

>BG453335 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
           sativa}, partial (11%)
          Length = 660

 Score =  100 bits (249), Expect = 1e-21
 Identities = 66/148 (44%), Positives = 93/148 (62%)
 Frame = +2

Query: 60  RRKIVKLCSTFNKMLIINILRRFQNQLDPKKHGIFWRIIIMGEKR*NKSSCNHIEGSMK* 119
           RR+I + CS+FN++L+   L+ F N  D +K  IFW+ I+    R ++ S +H EGS+ *
Sbjct: 122 RRRIARNCSSFNRVLMKETLKEFLNPQDQRKLQIFWKNIMKVMIRWSR*SFSH*EGSLN* 301

Query: 120 CKWKKIRR*VITSQR*LKL*IC*RIVVKTSLIR**LRKS*DL*VKSLTS*W*QSKKQRM* 179
           CKW+  RR +ITS  *  L*I *+++ K   I   LRKS*+  ++ L  *W Q   QRM*
Sbjct: 302 CKWRMRRRLLITSPN*SML*IR*KLMEK*LQINKLLRKS*EHYLQDLIL*WLQFMNQRM* 481

Query: 180 RL*RLKNCRVLLKHMNCW*LIEVQKDQF 207
           +L*RLKN +V  + +N W + E  KDQF
Sbjct: 482 KL*RLKN*KVPWRLIN*WFMREAVKDQF 565


>BG648607 weakly similar to PIR|F96614|F96 probable copia-type polyprotein
           T18I24.5 [imported] - Arabidopsis thaliana, partial (2%)
          Length = 563

 Score = 28.5 bits (62), Expect = 6.1
 Identities = 14/27 (51%), Positives = 19/27 (69%)
 Frame = +3

Query: 268 KFSAIIVKNLAILLMNVGSRKIRRLKK 294
           KF+AIIV NLA +L NV  R++   K+
Sbjct: 408 KFNAIIVGNLATML*NVDFRRVESKKR 488


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.371    0.167    0.604 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,230,463
Number of Sequences: 36976
Number of extensions: 183182
Number of successful extensions: 2754
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 1587
Number of HSP's gapped (non-prelim): 1317
length of query: 491
length of database: 9,014,727
effective HSP length: 100
effective length of query: 391
effective length of database: 5,317,127
effective search space: 2078996657
effective search space used: 2078996657
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.8 bits)
S2: 60 (27.7 bits)