TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144406.8 + phase: 0 /pseudo
         (106 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC85631 homologue to SP|Q9BBN9|NU1C_LOTJA NADH-plastoquinone oxi...    48  5e-07
AJ497758 similar to GP|14091074|gb| NADH dehydrogenase subunit 1...    40  2e-04
TC82367 similar to GP|19570986|dbj|BAB86413. diphosphonucleotide...    27  1.6
TC78607 similar to GP|20466746|gb|AAM20690.1 putative protein {A...    25  4.7
AL373405 similar to PIR|F86331|F863 hypothetical protein AAG1254...    25  4.7
TC76974 homologue to GP|9759112|dbj|BAB09597.1 low density lipop...    24  8.0
TC77967 homologue to PIR|T09846|T09846 phosphoenolpyruvate carbo...    24  8.0

>TC85631 homologue to SP|Q9BBN9|NU1C_LOTJA NADH-plastoquinone oxidoreductase
            chain 1  chloroplast (EC 1.6.5.3). {Lotus japonicus},
            complete
          Length = 3706

 Score = 48.1 bits (113), Expect = 5e-07
 Identities = 22/34 (64%), Positives = 25/34 (72%)
 Frame = +3

Query: 17   VMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
            ++F IS LAE  R PFDLPEAE E VAGY  EY+
Sbjct: 2628 IVFLISSLAECERLPFDLPEAEEELVAGYQTEYS 2729


>AJ497758 similar to GP|14091074|gb| NADH dehydrogenase subunit 1 {Ostrinia
           nubilalis}, partial (26%)
          Length = 514

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +2

Query: 21  ISRLAETNRAPFDLPEAEAESVAGYNVEYAR 51
           IS  AE NR PFD  E E+E V+G+N EY R
Sbjct: 188 ISCTAELNRTPFDFAEGESELVSGFNTEYRR 280


>TC82367 similar to GP|19570986|dbj|BAB86413. diphosphonucleotide
           phosphatase -like protein {Oryza sativa (japonica
           cultivar-group)}, partial (3%)
          Length = 611

 Score = 26.6 bits (57), Expect = 1.6
 Identities = 11/26 (42%), Positives = 13/26 (49%)
 Frame = +1

Query: 78  GACWGTLHSSFETNECRVGGFCLVIK 103
           G C G  H  FE    R+GG+ L  K
Sbjct: 400 GVCHGYRHRRFEAERWRLGGYDLTFK 477


>TC78607 similar to GP|20466746|gb|AAM20690.1 putative protein {Arabidopsis
           thaliana}, partial (55%)
          Length = 1734

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 23/72 (31%), Positives = 36/72 (49%), Gaps = 2/72 (2%)
 Frame = -3

Query: 22  SRLAETNRAPFDLPEAEAESVAGYNVE-YARDAILN-SPLLAEANVPGSRGLILTETRGA 79
           +RLA+ N     LP AE  S+   N++ +A +A    SPLL  ++VP S    L+   G 
Sbjct: 601 NRLAKPN-----LPYAEGSSI---NLDKWAENARAKASPLLLASSVPPSLATALSTRSGK 446

Query: 80  CWGTLHSSFETN 91
           C   + S +  +
Sbjct: 445 CSDKIVSQYSNS 410


>AL373405 similar to PIR|F86331|F863 hypothetical protein AAG12548.1
           [imported] - Arabidopsis thaliana, partial (64%)
          Length = 455

 Score = 25.0 bits (53), Expect = 4.7
 Identities = 13/40 (32%), Positives = 18/40 (44%), Gaps = 2/40 (5%)
 Frame = +2

Query: 22  SRLAETNRAPFDLPEAEAESVAGYNVE--YARDAILNSPL 59
           +R++  NRAP D+P        G N      R   LN P+
Sbjct: 119 ARISSANRAPSDVPSGHVAVCVGANYTRFVVRATYLNHPI 238


>TC76974 homologue to GP|9759112|dbj|BAB09597.1 low density lipoprotein
           B-like protein {Arabidopsis thaliana}, partial (11%)
          Length = 1121

 Score = 24.3 bits (51), Expect = 8.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 72  ILTETRGACWGTLHSSFETNECR 94
           +L  +RG CW T    F+   CR
Sbjct: 230 LLWPSRGQCWSTDGEVFKPGNCR 162


>TC77967 homologue to PIR|T09846|T09846 phosphoenolpyruvate carboxylase (EC
            4.1.1.31) 1 - upland cotton, partial (79%)
          Length = 2660

 Score = 24.3 bits (51), Expect = 8.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +3

Query: 6    IWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAG 44
            IW G+P F   V   +  +    R P++ P  +  S  G
Sbjct: 1065 IWKGVPKFLRRVDTALKNIGVNERVPYNAPVIQFSSWMG 1181


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.321    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,292,675
Number of Sequences: 36976
Number of extensions: 34392
Number of successful extensions: 164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of query: 106
length of database: 9,014,727
effective HSP length: 82
effective length of query: 24
effective length of database: 5,982,695
effective search space: 143584680
effective search space used: 143584680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)