BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144389.3 - phase: 0
(488 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79770 weakly similar to GP|14334163|gb|AAK60564.1 armadillo re... 778 0.0
TC92208 weakly similar to GP|14334163|gb|AAK60564.1 armadillo re... 455 e-128
TC90350 weakly similar to GP|22830929|dbj|BAC15794. hypothetical... 135 3e-32
TC88285 119 2e-27
TC90574 weakly similar to GP|8886935|gb|AAF80621.1| F2D10.27 {Ar... 66 3e-11
BG648375 weakly similar to PIR|T48624|T486 hypothetical protein ... 40 0.002
BF646977 weakly similar to PIR|T06629|T06 hypothetical protein T... 38 0.010
TC81159 weakly similar to PIR|T45588|T45588 arm repeat containin... 37 0.013
TC79279 similar to GP|16226454|gb|AAL16172.1 AT3g01400/T13O15_4 ... 33 0.25
BI265085 weakly similar to PIR|T10657|T106 probable ABC-type tra... 33 0.25
TC78090 GP|15528441|emb|CAC69138. MAP kinase kinase {Medicago sa... 31 0.94
BQ751198 homologue to GP|12718253|em probable importin alpha SRP... 31 0.94
TC81197 PIR|A26014|A26014 histone H3 - wheat, complete 31 1.2
BQ154698 weakly similar to GP|22122914|gb putative arm repeat co... 31 1.2
TC81784 similar to PIR|T40294|T40294 hypothetical protein SPBC35... 30 1.6
TC89467 similar to GP|20258993|gb|AAM14212.1 unknown protein {Ar... 30 1.6
AA660309 similar to PIR|H84545|H84 probable ubiquitin-conjugatin... 29 3.6
TC89157 similar to PIR|T48588|T48588 hypothetical protein T22N19... 29 3.6
TC93653 similar to GP|5031283|gb|AAD38147.1| unknown {Prunus arm... 29 4.7
TC80976 similar to PIR|T41746|T41746 ribosomal protein L11 homol... 29 4.7
>TC79770 weakly similar to GP|14334163|gb|AAK60564.1 armadillo
repeat-containing protein {Nicotiana tabacum}, partial
(39%)
Length = 1860
Score = 778 bits (2010), Expect = 0.0
Identities = 427/493 (86%), Positives = 439/493 (88%), Gaps = 5/493 (1%)
Frame = +1
Query: 1 MIMVKMLAEMESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLE 60
MIMVKMLAEMESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLE
Sbjct: 31 MIMVKMLAEMESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLE 210
Query: 61 MIQQGAARKLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNL 120
MIQQGAARKLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNL
Sbjct: 211 MIQQGAARKLFGILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNL 390
Query: 121 FSLVSYTVPDVRQYIIQTFYSLCHSPSASYIRNKLRECPSVLVLVKLFENESLSLRASAV 180
FSLVSYTVPDVRQYIIQTFYSLCHSPSASYIRNKLRECPSVLVLVKLFENESLSLRASAV
Sbjct: 391 FSLVSYTVPDVRQYIIQTFYSLCHSPSASYIRNKLRECPSVLVLVKLFENESLSLRASAV 570
Query: 181 KLFSCLVESCDEDAILKHVNQKCIETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQWL 240
KLFSCLVESCDEDAILKHVNQKCIETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQWL
Sbjct: 571 KLFSCLVESCDEDAILKHVNQKCIETLLQMLKSSSDKEEIVSAMGIIRYLPKVQQITQWL 750
Query: 241 YDAGALSIICKYVQDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQKSAAEIGIITVLVQ 300
YDAGALSIICKYVQDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQKSAAEIGIITVLVQ
Sbjct: 751 YDAGALSIICKYVQDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQKSAAEIGIITVLVQ 930
Query: 301 LLESGTAQTKQLAALSLTQFSKSSNELSSPMPKRKGFWCFSAQTEAGCL----VHGGVCI 356
LLESGTAQTKQLAALSLTQFSKSSNELSSPMPK +G F + + L V+
Sbjct: 931 LLESGTAQTKQLAALSLTQFSKSSNELSSPMPKPQGILVFLSSNRSRML*FMVVYASWNH 1110
Query: 357 VESSFCLLEADAVGALAKTLGDSDLGVCENSLDALLTL-IDGEKLQSGSKVLADENVIPL 415
+ + L+ + L TL + C L L L + G+ + K L ENVIPL
Sbjct: 1111HFAYWRLMRWEH*QRLLGTL----ILECVRIL*MLF*L*LMGKSYRVVVKCLQXENVIPL 1278
Query: 416 IIRFLGSPSPGLQEKSLNALERIFRLLEFKQKYGASAQMPLVDLTQRGNGSIKSLAARIL 475
IIRFLGSPSPGLQEKSLNALERIFRLLEFKQKYGASAQMPLVDLTQRGNGSIKSLAARIL
Sbjct: 1279IIRFLGSPSPGLQEKSLNALERIFRLLEFKQKYGASAQMPLVDLTQRGNGSIKSLAARIL 1458
Query: 476 AHLNVLHDQSSYF 488
AHLNVLHDQSSYF
Sbjct: 1459AHLNVLHDQSSYF 1497
>TC92208 weakly similar to GP|14334163|gb|AAK60564.1 armadillo
repeat-containing protein {Nicotiana tabacum}, partial
(18%)
Length = 1303
Score = 455 bits (1170), Expect = e-128
Identities = 234/323 (72%), Positives = 272/323 (83%), Gaps = 1/323 (0%)
Frame = +2
Query: 167 LFENESLSLRASAVKLFSCLVESCDEDAILKHVNQKCIETLLQMLKSSSDKEEIVSAMGI 226
L E+E+L+LRASA+KLFSCLVESCDE I++HV+QKCI TLLQ+L+SSSD EEI+SAMGI
Sbjct: 2 LCESENLNLRASAIKLFSCLVESCDESIIVEHVDQKCINTLLQILQSSSDDEEILSAMGI 181
Query: 227 IRYLPKVQQITQWLYDAGALSIICKYVQDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQ 286
I +LP++ QITQW+ DAG L II KYVQDG D+DLQ+S LVE + GAL RFTVPT+LEWQ
Sbjct: 182 ICHLPEIDQITQWILDAGVLPIIYKYVQDGRDRDLQRSNLVEKAVGALRRFTVPTHLEWQ 361
Query: 287 KSAAEIGIITVLVQLLESGTAQTKQLAALSLTQFSKSSNELSSPMPKRKG-FWCFSAQTE 345
K AE GIITVLVQLLESG+ TKQ AAL L +FSKSS LS P+PK+KG CFSA +E
Sbjct: 362 KIVAETGIITVLVQLLESGSTLTKQSAALCLAEFSKSSVSLSRPIPKQKGLLCCFSAPSE 541
Query: 346 AGCLVHGGVCIVESSFCLLEADAVGALAKTLGDSDLGVCENSLDALLTLIDGEKLQSGSK 405
GC VHGGVC V+SSFCLL A+A+G L + LG+SD GVCE SLDALLTLI+GEKL+SG K
Sbjct: 542 IGCKVHGGVCTVKSSFCLLAAEAIGPLTRNLGESDYGVCEASLDALLTLIEGEKLESGGK 721
Query: 406 VLADENVIPLIIRFLGSPSPGLQEKSLNALERIFRLLEFKQKYGASAQMPLVDLTQRGNG 465
VLA N IPLII+FL S S GLQEKSL+ALERIF+L EFKQ YGASAQMPLVDLTQR NG
Sbjct: 722 VLAKANAIPLIIKFLSSTSLGLQEKSLHALERIFQLAEFKQLYGASAQMPLVDLTQRSNG 901
Query: 466 SIKSLAARILAHLNVLHDQSSYF 488
++S++AR+LAHLNVLHDQSSYF
Sbjct: 902 RVRSMSARVLAHLNVLHDQSSYF 970
>TC90350 weakly similar to GP|22830929|dbj|BAC15794. hypothetical
protein~similar to Arabidopsis thaliana chromosome 1
T6L1.12, partial (32%)
Length = 984
Score = 135 bits (341), Expect = 3e-32
Identities = 93/326 (28%), Positives = 171/326 (51%), Gaps = 3/326 (0%)
Frame = +2
Query: 119 NLFSLVSYTVPDVRQYIIQTFYSLCHSPSASYIRNKLRECPSVLVLVKLFENESLSLRAS 178
++ SL++ + P ++ ++++ S+ AS +R K++E ++ +L+ + ++ +R
Sbjct: 11 HMLSLLNLSSPIIQGHLLEALNSMSSHLGASKVRRKMKEKGALQLLLPFLKENNIKIRCK 190
Query: 179 AVKLFSCLVESCDEDAILKHVNQKCIETLLQMLKSSSDKEEIVSAMGIIRYLPKV-QQIT 237
+ L L + D + +++++ I ++ ++ SS+ E +A+GI+ LP +++T
Sbjct: 191 VLNLLYTLSKDMT-DELTEYLDESHIFNIVNIVSSSTSDSEKAAAVGILSNLPASDKKVT 367
Query: 238 QWLYDAGALSIICKYV-QDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQKSAAEIGIIT 296
L A L ++ + K + L+EN+ G + RFT ++ + Q + + G+I
Sbjct: 368 DILKRASLLQLLISILYSSNASKSPSTNNLIENATGVINRFTNSSDKKLQLVSVQHGVIP 547
Query: 297 VLVQLLESGTAQTKQLAALSLTQFSKSSNELSSPMPKRKGFW-CFSAQTEAGCLVHGGVC 355
+LV+LL + + TK AA SL Q S++S L RK W C T A C H G C
Sbjct: 548 LLVKLLSTSSPITKSRAANSLAQLSQNSLSLRKC---RKSRWLCVQPSTNAYCESHDGYC 718
Query: 356 IVESSFCLLEADAVGALAKTLGDSDLGVCENSLDALLTLIDGEKLQSGSKVLADENVIPL 415
V S+FCL++A AV L + L D + E SL AL TL+ E ++G +A + +
Sbjct: 719 FVNSTFCLVKAGAVSQLIEMLEDKEKEAAEASLVALSTLLQDEIWENGVNFIAKLSGVQA 898
Query: 416 IIRFLGSPSPGLQEKSLNALERIFRL 441
II+ L +QEK+L E+IF++
Sbjct: 899 IIKSLEVGDAKVQEKALWMSEKIFKV 976
>TC88285
Length = 2273
Score = 119 bits (299), Expect = 2e-27
Identities = 83/261 (31%), Positives = 133/261 (50%), Gaps = 4/261 (1%)
Frame = +2
Query: 230 LPKVQ-QITQWLYDAGALSIICKYVQDGTDKDLQKSKLVENSAGALCRFTVPTNLEWQKS 288
LPK + ++T L + G L I ++ G K + EN+ AL RFT PTN+E Q+
Sbjct: 1508 LPKSERELTTKLIEMGGLDAIISILKTG------KMEAKENALSALFRFTDPTNIESQRD 1669
Query: 289 AAEIGIITVLVQLLESGTAQTKQLAALSLTQFSKSSNELSSPMPKRKGFWCFSAQTEAGC 348
+ GI +LV L +G+ K +AA + S S+ +L+ + K G W F + C
Sbjct: 1670 LVKRGIYPLLVDFLNTGSVTAKAIAAAFIGDLSMSTPKLTV-ISKPNGCWFFKSSRVPLC 1846
Query: 349 LVHGGVCIVESSFCLLEADAVGALAKTLGDSDLGVCENSLDALLTLIDGEKLQSGSKVLA 408
H VC V ++FCLLEA+A+ L K L ++ L TL+ E Q G+++L
Sbjct: 1847 AAHDSVCSVTTTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEEHPQRGARLLH 2026
Query: 409 DENVIPLIIRFLGSPSPGLQEKSLNALERIFRLLEFKQKYGASAQMPLVDLTQR---GNG 465
++N + ++ L S L+ ++L LE++F E + YG +A+ L+ LT G+G
Sbjct: 2027 EKNAMRPLLEILTWGSESLKAEALGLLEKVFVSKEMVEYYGTTARSRLICLTGSNIYGDG 2206
Query: 466 SIKSLAARILAHLNVLHDQSS 486
++ A++LA L SS
Sbjct: 2207 HLRXKVAKVLALLERYSKSSS 2269
>TC90574 weakly similar to GP|8886935|gb|AAF80621.1| F2D10.27 {Arabidopsis
thaliana}, partial (19%)
Length = 649
Score = 65.9 bits (159), Expect = 3e-11
Identities = 44/145 (30%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Frame = +3
Query: 348 CLVHGGVCIVESSFCLLEADAVGALAKTLGDSDLGVCENSLDALLTLI-DGEKLQSGSKV 406
C +H G C ++ +FCL E AV L L +++ V E +L AL T+I DG ++ G V
Sbjct: 24 CRIHRGKCSLKETFCLYEGQAVLKLVALLDHTNVNVVEAALAALCTVIDDGVDIEQGVMV 203
Query: 407 LAD-ENVIPLIIRFLGSPSPGLQEKSLNALERIFRL--LEFKQKYGASAQMPLVDLTQRG 463
L + E V P++ L + L+ +++ A+ER+ R + ++ + LVD Q G
Sbjct: 204 LCEAEGVKPILDVLLEKRTDNLRRRAVWAVERLLRTDDIAYEVSGDQNVSTALVDAFQHG 383
Query: 464 NGSIKSLAARILAHLNVLHDQSSYF 488
+ + +A R L H++ + + S F
Sbjct: 384 DYRTRQIAERALKHVDKIPNFSGIF 458
>BG648375 weakly similar to PIR|T48624|T486 hypothetical protein F18O22.300 -
Arabidopsis thaliana, partial (19%)
Length = 796
Score = 40.0 bits (92), Expect = 0.002
Identities = 42/201 (20%), Positives = 89/201 (43%), Gaps = 3/201 (1%)
Frame = +2
Query: 13 TDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGAARKLFG 72
++RNK + G+LP LL L+ + +++ A+ LS+ K+N + + GA + L
Sbjct: 194 SERNKIRIVRYGVLPILLNLLHCESQTVIQLSVAAMLTLSSCKRNKVAIASSGAVQILVE 373
Query: 73 ILFQHSLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDVFNLFSLVSYTVPDVR 132
++ ++ + S + +A + + I + L+ S +F+L L+ +V
Sbjct: 374 LINNSNIETQSQLDTIATLHNLTSCQEI-------IPLIASSGVIFSLLELIHDSVKS-- 526
Query: 133 QYIIQTFYSLCH---SPSASYIRNKLRECPSVLVLVKLFENESLSLRASAVKLFSCLVES 189
+++ L S S S + ++ +LV+ E+ S + AV + + +S
Sbjct: 527 SLLVEKAIGLLENIVSSSESALCEAASIGGAIRILVETIEDGSSLGKEHAVGILLLICQS 706
Query: 190 CDEDAILKHVNQKCIETLLQM 210
C E + + + LLQ+
Sbjct: 707 CREKYRVLILTDGVMPELLQL 769
>BF646977 weakly similar to PIR|T06629|T06 hypothetical protein T20K18.60 -
Arabidopsis thaliana, partial (29%)
Length = 662
Score = 37.7 bits (86), Expect = 0.010
Identities = 25/96 (26%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +1
Query: 4 VKMLAEMESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTL-KKNGLEMI 62
++ + S R+K L DSG++ PL+ ++S +++E + +L AL NL+ ++N ++++
Sbjct: 154 IRRMVRKSSKTRSK--LADSGVIQPLIFMLSSSNIEARESSLLALLNLAVRNERNKVQIV 327
Query: 63 QQGAARKLFGILFQHSLPSSSLSEHVAPIIMQLAAS 98
GA L +L + S+ + E I+ L+++
Sbjct: 328 TAGAVPPLVELL---KMQSNGIRELATAAILTLSSA 426
Score = 30.0 bits (66), Expect = 2.1
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 14 DRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGAARKLFGI 73
+RNK + +G +PPL+ L+ ++ +A A+ LS+ N + GAA L I
Sbjct: 304 ERNKVQIVTAGAVPPLVELLKMQSNGIRELATAAILTLSSAAPNKPIIAASGAAPLLVQI 483
Query: 74 L 74
L
Sbjct: 484 L 486
>TC81159 weakly similar to PIR|T45588|T45588 arm repeat containing protein
homolog - Arabidopsis thaliana, partial (12%)
Length = 1476
Score = 37.4 bits (85), Expect = 0.013
Identities = 27/106 (25%), Positives = 53/106 (49%), Gaps = 5/106 (4%)
Frame = +1
Query: 16 NKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGAARKLFGILF 75
++ +SG++P LL L++ +D + A+ AL NLS K+ EM++ + G+L
Sbjct: 391 SRSCFVESGLVPLLLLLLASSDSSAQENAIAALLNLSKYIKSRSEMVENWGLEMIVGVL- 567
Query: 76 QHSLPSSSLSEHVAPIIMQLA-----ASTISQDTQTPVSLLESDED 116
+ + +H A ++ LA A+ I ++ + SL+ +D
Sbjct: 568 -NKGINIEAKQHAAAVLFYLASNPEHANLIGEEPEAIPSLISLIKD 702
>TC79279 similar to GP|16226454|gb|AAL16172.1 AT3g01400/T13O15_4
{Arabidopsis thaliana}, partial (45%)
Length = 663
Score = 33.1 bits (74), Expect = 0.25
Identities = 23/93 (24%), Positives = 51/93 (54%)
Frame = +1
Query: 4 VKMLAEMESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQ 63
+++LA+ + +R K + +G + PL+ LV+ D++++ + A+ NLS +N +
Sbjct: 325 IRLLAKNKPENRIK--IAKAGAIKPLISLVTSQDLQLQEYGVTAILNLSLCDENKELIAS 498
Query: 64 QGAARKLFGILFQHSLPSSSLSEHVAPIIMQLA 96
GA + L L + +S+ E+ A +++L+
Sbjct: 499 SGAIKPLVRAL---NSGTSTAKENAACALLRLS 588
>BI265085 weakly similar to PIR|T10657|T106 probable ABC-type transport
protein T5F17.80 - Arabidopsis thaliana, partial (4%)
Length = 462
Score = 33.1 bits (74), Expect = 0.25
Identities = 25/91 (27%), Positives = 36/91 (39%)
Frame = +2
Query: 140 YSLCHSPSASYIRNKLRECPSVLVLVKLFENESLSLRASAVKLFSCLVESCDEDAILKHV 199
Y HS SYI + R CPS + +K F + S S S + +D LK
Sbjct: 149 YRYSHSNRISYINRQFRPCPSSIFSIKCFLSNSSSSSNSRASFST-------DDGSLK-- 301
Query: 200 NQKCIETLLQMLKSSSDKEEIVSAMGIIRYL 230
NQK T+ + +I ++ YL
Sbjct: 302 NQKTASTITKSPPGGGQIADIKILKSLVSYL 394
>TC78090 GP|15528441|emb|CAC69138. MAP kinase kinase {Medicago sativa subsp.
x varia}, complete
Length = 1677
Score = 31.2 bits (69), Expect = 0.94
Identities = 25/84 (29%), Positives = 39/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 197 KHVNQKCIETLLQMLKSSSDKEEIVSAMGIIR--YLPKVQQITQWLYDAGALSIICKYVQ 254
K NQ ++QM S +++I + I + P V Q YD G +SII +Y+
Sbjct: 488 KWTNQFFALKIIQMNIEESVRKQIAKELKINQAAQCPYVVVCYQSFYDNGVISIILEYMD 667
Query: 255 DGTDKDLQK--SKLVENSAGALCR 276
G+ DL K + E A+C+
Sbjct: 668 GGSMADLLKKVKTIPEPYLSAICK 739
>BQ751198 homologue to GP|12718253|em probable importin alpha SRP1
{Neurospora crassa}, partial (35%)
Length = 813
Score = 31.2 bits (69), Expect = 0.94
Identities = 15/49 (30%), Positives = 28/49 (56%)
Frame = +3
Query: 390 ALLTLIDGEKLQSGSKVLADENVIPLIIRFLGSPSPGLQEKSLNALERI 438
AL + G Q+ +V+ + +P+ + LGSP P ++E+++ AL I
Sbjct: 666 ALTNIASGSATQT--QVVIEAGAVPIFVELLGSPEPDVREQAVWALGNI 806
>TC81197 PIR|A26014|A26014 histone H3 - wheat, complete
Length = 646
Score = 30.8 bits (68), Expect = 1.2
Identities = 22/77 (28%), Positives = 34/77 (43%)
Frame = -2
Query: 282 NLEWQKSAAEIGIITVLVQLLESGTAQTKQLAALSLTQFSKSSNELSSPMPKRKGFWCFS 341
+LEW+ ++G + +L +S ++T+ + L S + S WCFS
Sbjct: 276 SLEWKLPYEKLGALLILADFTKSDGSRTE---TMWLLHSSGGRSGFPSGFCGELFAWCFS 106
Query: 342 AQTEAGCLVHGGVCIVE 358
A AGCL G C E
Sbjct: 105 AGGFAGCLF--GTCHFE 61
>BQ154698 weakly similar to GP|22122914|gb putative arm repeat containing
protein {Oryza sativa (japonica cultivar-group)},
partial (26%)
Length = 656
Score = 30.8 bits (68), Expect = 1.2
Identities = 14/48 (29%), Positives = 30/48 (62%)
Frame = +1
Query: 270 SAGALCRFTVPTNLEWQKSAAEIGIITVLVQLLESGTAQTKQLAALSL 317
+A +CR + +++E +K E+G I +L+ +LE+ ++LAA ++
Sbjct: 37 AASVICR--ICSSIEMKKMLGEVGCIPLLINMLEAKANTARELAAQAI 174
>TC81784 similar to PIR|T40294|T40294 hypothetical protein SPBC354.14c -
fission yeast (Schizosaccharomyces pombe), partial (30%)
Length = 1029
Score = 30.4 bits (67), Expect = 1.6
Identities = 20/76 (26%), Positives = 45/76 (58%), Gaps = 2/76 (2%)
Frame = +1
Query: 16 NKEILFDSGILPPLLRLVSHND-VEMKLVALKALQNL-STLKKNGLEMIQQGAARKLFGI 73
N+ + D+G L PL++L+++ + E++ A+ L+NL ++ ++N ++ GA ++ +
Sbjct: 163 NESPIIDAGFLSPLIQLLAYEENEEIQCHAISTLRNLAASSERNKRAIVDAGAVERVREL 342
Query: 74 LFQHSLPSSSLSEHVA 89
+ ++P S SE A
Sbjct: 343 VL--NVPLSVQSEMTA 384
Score = 28.9 bits (63), Expect = 4.7
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +1
Query: 26 LPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQGAARKLFGILFQHSLPSSSLS 85
LPPLLRL+ + + + L ++ ++N+S N +I G L +L + +
Sbjct: 70 LPPLLRLLQSSFLPLILSSVACIRNISIHPLNESPIIDAGFLSPLIQLLAYEE--NEEIQ 243
Query: 86 EHVAPIIMQLAAST 99
H + LAAS+
Sbjct: 244 CHAISTLRNLAASS 285
>TC89467 similar to GP|20258993|gb|AAM14212.1 unknown protein {Arabidopsis
thaliana}, partial (41%)
Length = 1015
Score = 30.4 bits (67), Expect = 1.6
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 10 MESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQQG 65
+ES + L G+LPPL+RLV K A+ +LQ LS + ++ G
Sbjct: 768 VESGGSCESWLVAEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMTEDTTRAIVGHG 935
>AA660309 similar to PIR|H84545|H84 probable ubiquitin-conjugating enzyme
[imported] - Arabidopsis thaliana, partial (4%)
Length = 600
Score = 29.3 bits (64), Expect = 3.6
Identities = 17/61 (27%), Positives = 32/61 (51%), Gaps = 3/61 (4%)
Frame = -2
Query: 81 SSSLSEHVAPIIMQLAASTISQDTQ---TPVSLLESDEDVFNLFSLVSYTVPDVRQYIIQ 137
+S LSE + P+++ +ST TP+S+ ES+ + + L S T+P + ++
Sbjct: 413 ASFLSEFLQPLLLSSPSSTSPSSPSSSVTPLSVSESESESESESPLTSVTIPTIPVFLFL 234
Query: 138 T 138
T
Sbjct: 233 T 231
>TC89157 similar to PIR|T48588|T48588 hypothetical protein T22N19.60 -
Arabidopsis thaliana, partial (42%)
Length = 597
Score = 29.3 bits (64), Expect = 3.6
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = +2
Query: 295 ITVLVQLLESGTAQTKQLAALSLTQFSKSSNELSSPMPKRKGFWCFSAQTEAGCLVHGGV 354
+TV+ LL A + SL + S + S + G CF E +V +
Sbjct: 47 VTVMASLLSFSFASLSLPKSQSLDPHNLSDSSFSGKSNSKSGNCCFPTSFERRKMVLSSI 226
Query: 355 CIVESSFC 362
++ +FC
Sbjct: 227 AVIAGTFC 250
>TC93653 similar to GP|5031283|gb|AAD38147.1| unknown {Prunus armeniaca},
partial (30%)
Length = 661
Score = 28.9 bits (63), Expect = 4.7
Identities = 30/164 (18%), Positives = 67/164 (40%), Gaps = 11/164 (6%)
Frame = +2
Query: 4 VKMLAEMESTDRNKEILFDSGILPPLLRLVSHNDVEMKLVALKALQNLSTLKKNGLEMIQ 63
+K++ + S ++ IL + + + ++ E K L+ L+ K ++
Sbjct: 80 IKVIPKSTSLEQRIFILIKALQKETNMGYATTDETENKSDRLQELKAFDETKAGVKGLVD 259
Query: 64 QGAARKLFGILFQH------SLPSSSLSEHVAPIIMQLAASTISQDTQTPVSLLESDEDV 117
QG + LF H +S+ +EH+ P+I L Q ++ ++ +
Sbjct: 260 QGILK--IPALFHHPPDKYGKSTNSTNTEHIIPVIDFLNIGKDPNTRQEIITKIKEASET 433
Query: 118 FNLFSLVSYTVP-----DVRQYIIQTFYSLCHSPSASYIRNKLR 156
+ F +V++ +P D++ +I+ F Y R++ R
Sbjct: 434 WGFFQVVNHGIPINVLEDMKDGVIRFFEQDTEVKKEMYTRDQTR 565
>TC80976 similar to PIR|T41746|T41746 ribosomal protein L11 homolog -
Arabidopsis thaliana, partial (92%)
Length = 890
Score = 28.9 bits (63), Expect = 4.7
Identities = 17/69 (24%), Positives = 34/69 (48%)
Frame = +1
Query: 420 LGSPSPGLQEKSLNALERIFRLLEFKQKYGASAQMPLVDLTQRGNGSIKSLAARILAHLN 479
LGS PG + +L ++ + + KQ MPL +++ G+ +S+ +I+ L
Sbjct: 391 LGSTRPGHVTATSLSLRHVYEIAKVKQSDPYLQGMPLESISKSIIGTARSMGIKIVKDLE 570
Query: 480 VLHDQSSYF 488
+ ++S F
Sbjct: 571 *IDQRNSTF 597
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,918,063
Number of Sequences: 36976
Number of extensions: 186771
Number of successful extensions: 931
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of query: 488
length of database: 9,014,727
effective HSP length: 100
effective length of query: 388
effective length of database: 5,317,127
effective search space: 2063045276
effective search space used: 2063045276
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC144389.3