BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144375.7 - phase: 0
(123 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC76851 homologue to PIR|S40122|S40122 high mobility group prote... 129 4e-31
TC76853 similar to PIR|T09581|T09581 probable high mobility grou... 124 7e-30
TC76852 similar to PIR|T09581|T09581 probable high mobility grou... 124 9e-30
TC77517 similar to PIR|T51159|T51159 HMG protein [imported] - Ar... 118 7e-28
BQ123028 similar to PIR|T09581|T09 probable high mobility group ... 82 4e-17
TC92311 weakly similar to GP|18700443|dbj|BAB85204. high mobilit... 61 2e-14
AJ501279 similar to GP|20197083|gb| putative HMG protein {Arabid... 72 7e-14
TC87578 similar to PIR|T12113|T12113 transcription factor - fava... 45 9e-06
TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome... 38 9e-04
TC80836 similar to GP|23499268|emb|CAD51348. hypothetical protei... 38 0.001
TC80972 weakly similar to GP|23496972|gb|AAN36523.1 hypothetical... 37 0.001
BF646260 similar to GP|7291176|gb|A CG15295 gene product {Drosop... 37 0.002
TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed pr... 37 0.002
TC89968 similar to GP|23497521|gb|AAN37063.1 hypothetical protei... 37 0.002
TC82080 similar to GP|9757854|dbj|BAB08488.1 contains similarity... 37 0.002
TC80287 weakly similar to GP|12667516|gb|AAG61157.1 DBC2 {Homo s... 36 0.003
TC87688 similar to GP|10177535|dbj|BAB10930. gene_id:K1F13.21~un... 36 0.004
AJ502594 weakly similar to PIR|T05755|T057 hypothetical protein ... 35 0.006
AW257087 homologue to GP|6683126|dbj KIAA0339 protein {Homo sapi... 35 0.006
AW689515 homologue to GP|1066501|gb|A serine/threonine protein k... 35 0.007
>TC76851 homologue to PIR|S40122|S40122 high mobility group protein HMG-1 -
garden pea, partial (92%)
Length = 863
Score = 129 bits (323), Expect = 4e-31
Identities = 66/122 (54%), Positives = 86/122 (70%), Gaps = 9/122 (7%)
Frame = +2
Query: 2 ARKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK- 60
A+ K DP+KPKRP S FF+FM DFR +F+K+NPDNK VS VGKAAG KW+S+S+AEK
Sbjct: 197 AKGKEPKDPNKPKRPPSAFFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSEAEKA 376
Query: 61 -------KKKMEYVKAIHAYNKKVA-GKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEED 112
K+K EY K + AYNKK A G + + KS SE++D+++DDD++ EEEED
Sbjct: 377 PYAAKAEKRKAEYEKTMKAYNKKQAEGPAAVEEEESGKSESEVHDENEDDDEDGSEEEED 556
Query: 113 DE 114
DE
Sbjct: 557 DE 562
>TC76853 similar to PIR|T09581|T09581 probable high mobility group protein
HMG1 - sword bean, partial (97%)
Length = 907
Score = 124 bits (312), Expect = 7e-30
Identities = 63/119 (52%), Positives = 84/119 (69%), Gaps = 8/119 (6%)
Frame = +3
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KKA DP+KPKRP S FF+FMSDFR +++K++P+NK V+ VGKA GE W+SMS+ +K
Sbjct: 207 KKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNNKSVAAVGKACGEAWKSMSEEDKAPY 386
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
KKK EY A AYNKK+ GK G KS SE+ND+D+D++D E+++EDDE
Sbjct: 387 AARALKKKEEYEVATQAYNKKLEGKDEEDGSD--KSKSEVNDEDEDEED--EDDDEDDE 551
>TC76852 similar to PIR|T09581|T09581 probable high mobility group protein
HMG1 - sword bean, partial (93%)
Length = 731
Score = 124 bits (311), Expect = 9e-30
Identities = 63/114 (55%), Positives = 81/114 (70%), Gaps = 8/114 (7%)
Frame = +2
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KKAK DP+KPKRP S FF+FMS+FR RF+KENP NK V+VVGKA G++W+++SDA+K
Sbjct: 152 KKAK-DPNKPKRPPSAFFVFMSEFRERFKKENPSNKSVAVVGKAGGKEWKALSDADKAPF 328
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEE 109
K K EY K + AYN + K +S + KS SE+NDDD+D DD E+EE
Sbjct: 329 IAKADKLKEEYEKTMRAYNMGITEKNASEEEGSEKSKSEVNDDDEDGDDEEDEE 490
>TC77517 similar to PIR|T51159|T51159 HMG protein [imported] - Arabidopsis
thaliana, partial (70%)
Length = 907
Score = 118 bits (295), Expect = 7e-28
Identities = 61/121 (50%), Positives = 84/121 (69%), Gaps = 10/121 (8%)
Frame = +3
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KKAK DP+KPKRP S FF+F+ DFR F+ ENP+ K VS VGKA GEKW+S++ AEK
Sbjct: 246 KKAKKDPNKPKRPPSAFFVFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKAEKAPY 425
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDD--DDDDNEEEEEEDD 113
K+K+EY K ++AYN K + +S K NSE+N++D+ +DD++++EEEDD
Sbjct: 426 EAKAAKRKVEYEKLMNAYNNKPSSADDDEEES-DKDNSEVNNEDEASGEDDHQDDEEEDD 602
Query: 114 E 114
E
Sbjct: 603 E 605
>BQ123028 similar to PIR|T09581|T09 probable high mobility group protein HMG1
- sword bean, partial (73%)
Length = 657
Score = 82.4 bits (202), Expect = 4e-17
Identities = 38/55 (69%), Positives = 48/55 (87%)
Frame = +1
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDA 58
KKAK DP+KPKRP S FF+FMS+FR RF+KENP NK V+VVGKA G++W+++SDA
Sbjct: 103 KKAK-DPNKPKRPPSAFFVFMSEFRERFKKENPSNKSVAVVGKAGGKEWKALSDA 264
Score = 37.0 bits (84), Expect = 0.002
Identities = 16/30 (53%), Positives = 21/30 (69%)
Frame = +2
Query: 80 KKSSSGKSFVKSNSELNDDDDDDDDNEEEE 109
K +S + KS SE+NDDD+D DD E+EE
Sbjct: 548 KNASEEEGSEKSKSEVNDDDEDGDDEEDEE 637
>TC92311 weakly similar to GP|18700443|dbj|BAB85204. high mobility group box
protein 2 {Oryza sativa (japonica cultivar-group)},
partial (40%)
Length = 687
Score = 61.2 bits (147), Expect(2) = 2e-14
Identities = 41/102 (40%), Positives = 53/102 (51%), Gaps = 8/102 (7%)
Frame = +2
Query: 21 FLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--------KKKMEYVKAIHA 72
F +MS FR F++ NPD+K V VGK AGEKWRS+++ EK + K EY KA+
Sbjct: 359 FSWMS-FRKIFKEANPDSKDVKRVGKEAGEKWRSLTEEEKNPYLDKVVELKAEYDKAMEL 535
Query: 73 YNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
YN A + G K + E DD + E EE DE
Sbjct: 536 YNAATAESEDQEGSD--KEDKEGQSDDKETAAAGEVEELTDE 655
Score = 32.3 bits (72), Expect(2) = 2e-14
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 1 MARKKAKSDPSKPKRPQSPFFLFMSDF 27
+ + K DP+ PKRP + FF+FM +F
Sbjct: 295 LGKGKKVKDPNAPKRPPTAFFVFMDEF 375
>AJ501279 similar to GP|20197083|gb| putative HMG protein {Arabidopsis
thaliana}, partial (51%)
Length = 508
Score = 71.6 bits (174), Expect = 7e-14
Identities = 34/83 (40%), Positives = 51/83 (60%), Gaps = 8/83 (9%)
Frame = +2
Query: 3 RKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK-- 60
+ K K D +PK+P + FF F+ DFR F+ +NPD K + +GKA GEKW++M+ EK
Sbjct: 203 KNKQKIDAKRPKKPPTAFFYFLEDFRKEFKDQNPDVKSMRDIGKACGEKWKTMTFEEKVQ 382
Query: 61 ------KKKMEYVKAIHAYNKKV 77
+K+ E+ +A YNKK+
Sbjct: 383 YYDIATEKRAEFDRATTEYNKKM 451
>TC87578 similar to PIR|T12113|T12113 transcription factor - fava bean,
partial (49%)
Length = 1021
Score = 44.7 bits (104), Expect = 9e-06
Identities = 23/59 (38%), Positives = 30/59 (49%)
Frame = +2
Query: 3 RKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEKK 61
++K K DP+ PKR S F F R +K NP + V K GE W+ MS EK+
Sbjct: 758 KQKKKKDPNAPKRGMSGFMFFSQMERENIKKANPGISFTD-VAKLLGENWKKMSAEEKE 931
>TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome assembly
protein 1 {Atropa belladonna}, partial (46%)
Length = 583
Score = 38.1 bits (87), Expect = 9e-04
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +2
Query: 90 KSNSELNDDDDDDDDNEEEEEEDDE 114
+ E +DDDDDDDD++EE+E+D+E
Sbjct: 98 EDGDEEDDDDDDDDDDDEEDEDDEE 172
Score = 36.2 bits (82), Expect = 0.003
Identities = 13/23 (56%), Positives = 21/23 (90%)
Frame = +2
Query: 92 NSELNDDDDDDDDNEEEEEEDDE 114
+ E +DDDDDDDD+EE+E++++E
Sbjct: 107 DEEDDDDDDDDDDDEEDEDDEEE 175
Score = 35.0 bits (79), Expect = 0.007
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +2
Query: 96 NDDDDDDDDNEEEEEEDDE 114
+DDDDDDD+ +E++EE+DE
Sbjct: 125 DDDDDDDDEEDEDDEEEDE 181
Score = 33.9 bits (76), Expect = 0.016
Identities = 11/19 (57%), Positives = 18/19 (93%)
Frame = +2
Query: 96 NDDDDDDDDNEEEEEEDDE 114
+DDDDDDDD E+E++E+++
Sbjct: 122 DDDDDDDDDEEDEDDEEED 178
Score = 33.1 bits (74), Expect = 0.028
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +2
Query: 89 VKSNSELNDDDDDDDDNEEEEEEDDE 114
V + E D++DDDDD++++++E+DE
Sbjct: 83 VDEDDEDGDEEDDDDDDDDDDDEEDE 160
Score = 32.0 bits (71), Expect = 0.061
Identities = 11/37 (29%), Positives = 25/37 (66%)
Frame = +2
Query: 78 AGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
AG+ + + + +++DDDDDD+++++EED++
Sbjct: 53 AGESDFDDIEVDEDDEDGDEEDDDDDDDDDDDEEDED 163
Score = 28.9 bits (63), Expect = 0.52
Identities = 9/36 (25%), Positives = 24/36 (66%)
Frame = +2
Query: 79 GKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
G+ S ++ + + D D++DDD+++++++D+E
Sbjct: 47 GEAGESDFDDIEVDEDDEDGDEEDDDDDDDDDDDEE 154
Score = 28.5 bits (62), Expect = 0.68
Identities = 9/31 (29%), Positives = 22/31 (70%)
Frame = +2
Query: 84 SGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
+G++ ++ D+DD+D +EE++++DD+
Sbjct: 44 TGEAGESDFDDIEVDEDDEDGDEEDDDDDDD 136
>TC80836 similar to GP|23499268|emb|CAD51348. hypothetical protein {Plasmodium
falciparum 3D7}, partial (1%)
Length = 1193
Score = 37.7 bits (86), Expect = 0.001
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 82 SSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDEVRFFS 119
S + SF+ N E+ DDDD+ DD++E + E+ E+ +FS
Sbjct: 1000 SEAKLSFI--NQEIGDDDDESDDDDESDGEEQEIPYFS 1107
>TC80972 weakly similar to GP|23496972|gb|AAN36523.1 hypothetical protein
{Plasmodium falciparum 3D7}, partial (9%)
Length = 662
Score = 37.4 bits (85), Expect = 0.001
Identities = 18/23 (78%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
Frame = -2
Query: 94 ELNDDDDDDDDNEE-EEEEDDEV 115
E +DDDD DDDNEE +EEEDDEV
Sbjct: 628 EEDDDDDADDDNEEKDEEEDDEV 560
Score = 25.4 bits (54), Expect = 5.7
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -2
Query: 92 NSELNDDDDDDDDNEEEEEE 111
++E D+++DD+ EEE+EE
Sbjct: 598 DNEEKDEEEDDEVEEEEQEE 539
Score = 25.4 bits (54), Expect = 5.7
Identities = 8/27 (29%), Positives = 21/27 (77%)
Frame = -2
Query: 88 FVKSNSELNDDDDDDDDNEEEEEEDDE 114
+++ + + + DDD+++ +EEE++E +E
Sbjct: 634 WIEEDDDDDADDDNEEKDEEEDDEVEE 554
>BF646260 similar to GP|7291176|gb|A CG15295 gene product {Drosophila
melanogaster}, partial (4%)
Length = 670
Score = 37.0 bits (84), Expect = 0.002
Identities = 20/63 (31%), Positives = 36/63 (56%)
Frame = +2
Query: 52 WRSMSDAEKKKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEE 111
W + + + +++E + A+H NK K+F K + ++ DDDDDD+ EE+ E+
Sbjct: 344 WPTPNPPPQPQEIERLSALHLQNKAC--------KAF-KDSLLIDSDDDDDDEVEEDYED 496
Query: 112 DDE 114
+DE
Sbjct: 497 EDE 505
>TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed protein
{Arabidopsis thaliana}, partial (50%)
Length = 753
Score = 36.6 bits (83), Expect = 0.002
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 90 KSNSELNDDDDDDDDNEEEEEEDDEVRFFS 119
K SE DDDD+DDD++ +E+DD FS
Sbjct: 292 KDGSETEDDDDEDDDDDVNDEDDDNDEDFS 381
Score = 35.8 bits (81), Expect = 0.004
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +1
Query: 91 SNSELNDDDDDDDDNEEEEEEDDE 114
S+ + DDDDDDDDN++ E+ED++
Sbjct: 445 SDDDDEDDDDDDDDNDDGEDEDED 516
Score = 34.3 bits (77), Expect = 0.012
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +1
Query: 92 NSELNDDDDDDDDNEEEEEEDDE 114
+ E +DDDDDD+D+ E+E+ED+E
Sbjct: 454 DDEDDDDDDDDNDDGEDEDEDEE 522
Score = 33.1 bits (74), Expect = 0.028
Identities = 11/19 (57%), Positives = 18/19 (93%)
Frame = +1
Query: 96 NDDDDDDDDNEEEEEEDDE 114
+DDDDD+DD E+E+E+++E
Sbjct: 469 DDDDDDNDDGEDEDEDEEE 525
Score = 31.6 bits (70), Expect = 0.080
Identities = 15/35 (42%), Positives = 23/35 (64%), Gaps = 2/35 (5%)
Frame = +1
Query: 82 SSSGKSFVKSNSELNDDDDDDD--DNEEEEEEDDE 114
+ +G S + +DDDD+DD D +E+EEEDD+
Sbjct: 430 NGAGGSDDDDEDDDDDDDDNDDGEDEDEDEEEDDD 534
Score = 30.4 bits (67), Expect = 0.18
Identities = 9/19 (47%), Positives = 18/19 (94%)
Frame = +1
Query: 96 NDDDDDDDDNEEEEEEDDE 114
NDD +D+D++EEE++++D+
Sbjct: 487 NDDGEDEDEDEEEDDDEDQ 543
Score = 27.7 bits (60), Expect = 1.2
Identities = 8/23 (34%), Positives = 19/23 (81%)
Frame = +1
Query: 92 NSELNDDDDDDDDNEEEEEEDDE 114
+ ++ND+DDD+D++ +E+D++
Sbjct: 334 DDDVNDEDDDNDEDFSGDEDDED 402
Score = 26.9 bits (58), Expect = 2.0
Identities = 10/35 (28%), Positives = 20/35 (56%)
Frame = +1
Query: 78 AGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEED 112
AG + + + +D +D+D+D EE+++ED
Sbjct: 436 AGGSDDDDEDDDDDDDDNDDGEDEDEDEEEDDDED 540
Score = 26.2 bits (56), Expect = 3.4
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +1
Query: 80 KKSSSGKSFVKSNSELNDDDDDDDDNEEEE----EEDDE 114
+++ G + E +DDD +D+D++ +E +EDDE
Sbjct: 283 EENKDGSETEDDDDEDDDDDVNDEDDDNDEDFSGDEDDE 399
>TC89968 similar to GP|23497521|gb|AAN37063.1 hypothetical protein
{Plasmodium falciparum 3D7}, partial (4%)
Length = 598
Score = 36.6 bits (83), Expect = 0.002
Identities = 20/75 (26%), Positives = 37/75 (48%), Gaps = 15/75 (20%)
Frame = +3
Query: 59 EKKKKMEYVKAIHAYNKKVAGKKSSSGKSFV---------------KSNSELNDDDDDDD 103
E+ +K ++KA+ ++K+ ++ + + + ++ +DD DDD
Sbjct: 177 ERDEKFVFLKALKKMDQKLVLEEQGNAREVKIPKKLLFDRIQVPTPATKDQVEEDDYDDD 356
Query: 104 DNEEEEEEDDEVRFF 118
D EEEEEEDD +F
Sbjct: 357 DEEEEEEEDDVDMWF 401
>TC82080 similar to GP|9757854|dbj|BAB08488.1 contains similarity to
apoptosis antagonizing transcription
factor~gene_id:MFB13.10, partial (37%)
Length = 908
Score = 36.6 bits (83), Expect = 0.002
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
Frame = +2
Query: 76 KVAGKKSSSGKSFVKSNSELNDDDDD--------DDDNEEEEEEDDE 114
K+ + + K KS+S+L++ DDD D + EEEEEEDDE
Sbjct: 14 KMGSRSAKKSKKMQKSDSDLDEYDDDMSFNEVNDDSEVEEEEEEDDE 154
Score = 31.2 bits (69), Expect = 0.10
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +2
Query: 89 VKSNSELNDDDDDDDDNEEEEEEDD 113
V +SE+ +++++DD+ +EEEED+
Sbjct: 107 VNDDSEVEEEEEEDDEGSDEEEEDE 181
>TC80287 weakly similar to GP|12667516|gb|AAG61157.1 DBC2 {Homo sapiens},
partial (4%)
Length = 779
Score = 36.2 bits (82), Expect = 0.003
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = -3
Query: 91 SNSELNDDDDDDDDNEEEEEEDDEV 115
S ++N DDDDDDD+E E++ DD++
Sbjct: 453 SEEQVNHDDDDDDDDESEDDGDDDL 379
Score = 28.5 bits (62), Expect = 0.68
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = -3
Query: 85 GKSFVKSNSELNDDDDDDDDNEEEEEEDDEV 115
G S + N + +DDDDD+ +++ +++ DDE+
Sbjct: 459 GYSEEQVNHDDDDDDDDESEDDGDDDLDDEL 367
>TC87688 similar to GP|10177535|dbj|BAB10930. gene_id:K1F13.21~unknown
protein {Arabidopsis thaliana}, partial (46%)
Length = 2077
Score = 35.8 bits (81), Expect = 0.004
Identities = 16/28 (57%), Positives = 21/28 (74%), Gaps = 1/28 (3%)
Frame = +2
Query: 94 ELNDDDDDDDDNEEEEEED-DEVRFFSF 120
E++D+DDDDDD E+EE ED VR+ F
Sbjct: 710 EMDDEDDDDDDEEDEEAEDMGNVRYEDF 793
Score = 30.8 bits (68), Expect = 0.14
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 80 KKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
KK + G S + + E DD+D++ +E++EED++
Sbjct: 443 KKKAKGGSEGEDDFEEEDDEDEEGSEDEDDEEDEK 547
Score = 28.9 bits (63), Expect = 0.52
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 15/38 (39%)
Frame = +2
Query: 92 NSELNDDDDD---------------DDDNEEEEEEDDE 114
+ EL+DDDDD +DD EEE++ED+E
Sbjct: 398 DEELDDDDDDFEGVEKKKAKGGSEGEDDFEEEDDEDEE 511
>AJ502594 weakly similar to PIR|T05755|T057 hypothetical protein M4I22.120 -
Arabidopsis thaliana, partial (41%)
Length = 353
Score = 35.4 bits (80), Expect = 0.006
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 91 SNSELNDDDDDDDDNEEEEEEDDEV 115
+N E ND DDDDDD E+++EE+ V
Sbjct: 270 NNDEDNDQDDDDDDTEDDDEENQVV 344
Score = 32.7 bits (73), Expect = 0.036
Identities = 11/27 (40%), Positives = 23/27 (84%)
Frame = +3
Query: 89 VKSNSELNDDDDDDDDNEEEEEEDDEV 115
V +N++ ++D DDDDD+ E+++E+++V
Sbjct: 261 VTNNNDEDNDQDDDDDDTEDDDEENQV 341
>AW257087 homologue to GP|6683126|dbj KIAA0339 protein {Homo sapiens},
partial (2%)
Length = 466
Score = 35.4 bits (80), Expect = 0.006
Identities = 15/37 (40%), Positives = 26/37 (69%)
Frame = -3
Query: 79 GKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDEV 115
G SSS S + E D+D+D+D++E+E+E+D+E+
Sbjct: 419 GFASSSSSSSSLLDDEDEDEDEDEDEDEDEDEDDEEL 309
Score = 32.0 bits (71), Expect = 0.061
Identities = 14/38 (36%), Positives = 27/38 (70%)
Frame = -3
Query: 77 VAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
+AG ++G + S+S DD+D+D++E+E+E++DE
Sbjct: 443 LAGVFFTTGFASSSSSSSSLLDDEDEDEDEDEDEDEDE 330
Score = 29.3 bits (64), Expect = 0.40
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +1
Query: 54 SMSDAEKKKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDD 113
S + A KK E + + + SSS S S+S + + DD EEEEE
Sbjct: 241 SAAKATPAKKEESDSDSDSDSSSSSSSSSSSSSSSSSSSSSSSSSSSNSDDEEEEEEAKP 420
Query: 114 EVR 116
V+
Sbjct: 421 VVK 429
Score = 29.3 bits (64), Expect = 0.40
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 78 AGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEE 111
A SSS + + ++D+D+D+D +E++EE
Sbjct: 413 ASSSSSSSSLLDDEDEDEDEDEDEDEDEDEDDEE 312
Score = 25.8 bits (55), Expect = 4.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = -3
Query: 82 SSSGKSFV----KSNSELNDDDDDDDDNEEEEEEDDE 114
SSS S + + E D+D+D+D+++EE E+ E
Sbjct: 404 SSSSSSLLDDEDEDEDEDEDEDEDEDEDDEELLEESE 294
Score = 25.4 bits (54), Expect = 5.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 90 KSNSELNDDDDDDDDNEEEEEEDDE 114
+ E D+D+D+DD E EE + E
Sbjct: 362 EDEDEDEDEDEDEDDEELLEESESE 288
>AW689515 homologue to GP|1066501|gb|A serine/threonine protein kinase
{Arabidopsis thaliana}, partial (10%)
Length = 675
Score = 35.0 bits (79), Expect = 0.007
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +1
Query: 28 RVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEKKKKMEY-VKAIHAYNKKVAGKKSSSGK 86
R F+KEN + ++ A E W +++ Y + IH+ + V + +
Sbjct: 157 RTLFKKENWKSSLFKLIKNIACEAWMICCVVWLLQELGY*LWVIHSLKEVVEVEGCKACC 336
Query: 87 SFVKSNSELNDDDDDDDDNEEEEEE 111
KS + +D DD+DDD EEE+
Sbjct: 337 C*KKSKKDSSDSDDEDDDRSSEEEK 411
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.310 0.128 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,430,391
Number of Sequences: 36976
Number of extensions: 42590
Number of successful extensions: 2929
Number of sequences better than 10.0: 371
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1873
length of query: 123
length of database: 9,014,727
effective HSP length: 84
effective length of query: 39
effective length of database: 5,908,743
effective search space: 230440977
effective search space used: 230440977
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC144375.7