BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144345.7 - phase: 0 /pseudo
(366 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non... 58 2e-20
TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot... 57 6e-14
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp... 69 1e-12
BQ148771 69 4e-12
BG584442 47 2e-05
TC82763 40 0.002
AI737603 37 0.016
TC82948 36 0.027
BF006686 36 0.027
AJ497561 weakly similar to GP|10140689|gb putative non-LTR retro... 32 0.39
BF634212 weakly similar to GP|10798748|dbj elicitor inducible ge... 30 1.9
TC76721 homologue to GP|8132441|gb|AAF73291.1| extensin {Pisum s... 27 2.4
BF650593 29 3.3
TC86931 homologue to GP|9758482|dbj|BAB09011.1 gene_id:K11J9.20~... 29 3.3
TC80043 similar to GP|9759561|dbj|BAB11163.1 MtN21 nodulin prote... 28 4.3
BF642399 similar to PIR|T10863|T10 extensin precursor - kidney b... 28 5.6
TC76718 homologue to GP|8132441|gb|AAF73291.1| extensin {Pisum s... 28 5.6
BQ141029 similar to GP|8132441|gb| extensin {Pisum sativum}, par... 28 5.6
TC93373 similar to GP|3676071|emb|CAA76979.1 ERG protein {Arabid... 28 5.6
BE316110 similar to PIR|T06782|T067 extensin - soybean, partial ... 28 7.3
>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
retroelement reverse transcriptase {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 1262
Score = 58.2 bits (139), Expect(2) = 2e-20
Identities = 30/70 (42%), Positives = 38/70 (53%)
Frame = +3
Query: 141 GGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWVDPWLEEKP 200
GG LC R S+WW+TI VR+GVG+ W +NI VG+G FW D W + P
Sbjct: 144 GGWLCEGGRQS-SMWWKTICKVREGVGEGVGNWFEENIRMVVGDGRDAFFWYDTWAGDVP 320
Query: 201 LS*RRINYTR 210
L R+ Y R
Sbjct: 321 L---RLKYPR 341
Score = 58.2 bits (139), Expect(2) = 2e-20
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +1
Query: 100 GLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCARYGEEGG 142
GLGV FNL+LLGKW WR+L ++ LW+RVL ARYGEEGG
Sbjct: 31 GLGVGA---FNLSLLGKWCWRLLVDKEGLWHRVLKARYGEEGG 150
>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
dioxygenase1 {Pisum sativum}, partial (43%)
Length = 1865
Score = 57.0 bits (136), Expect(2) = 6e-14
Identities = 24/46 (52%), Positives = 33/46 (71%)
Frame = -3
Query: 93 CSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCARYG 138
C + +GGLGVR +R N++LL KWWWR+LQ++ +LW VL YG
Sbjct: 969 CLPRCKGGLGVRDIRLVNVSLLAKWWWRLLQDQSSLWKEVLEDIYG 832
Score = 37.7 bits (86), Expect(2) = 6e-14
Identities = 17/49 (34%), Positives = 28/49 (56%)
Frame = -2
Query: 153 SVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWVDPWLEEKPL 201
S WW+ ++ + + VG++ W + R+VG+G S+ FW D W PL
Sbjct: 778 SRWWKDLMSLEE-VGRVR--WFPRELIRKVGDGRSSFFWKDAWDSSVPL 641
>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
Arabidopsis thaliana, partial (6%)
Length = 951
Score = 69.3 bits (168), Expect(2) = 1e-12
Identities = 32/53 (60%), Positives = 42/53 (78%)
Frame = +2
Query: 1 LPIGGDPRKLAFWYPLVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFL 53
+PI G+ R+L+FW P+V+RIK RL+ W SR LS GGRL+LLK VL+S+ VY L
Sbjct: 770 MPIEGNSRRLSFWEPIVNRIKARLTGWNSRFLSFGGRLVLLKSVLTSLSVYAL 928
Score = 20.8 bits (42), Expect(2) = 1e-12
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +1
Query: 54 SFFKAPSG 61
SFFKAPSG
Sbjct: 928 SFFKAPSG 951
>BQ148771
Length = 680
Score = 68.6 bits (166), Expect = 4e-12
Identities = 37/114 (32%), Positives = 58/114 (50%)
Frame = -3
Query: 24 LSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFWGGCEDIRK 83
L++WK+ +LS+ R+ L K V+ ++P+Y + P I ++ L F WG E R+
Sbjct: 573 LANWKANHLSLARRVTLAKSVIEAVPLYPMMTTIIPKACIEEIQKLQRKFVWGDTEVSRR 394
Query: 84 ITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCARY 137
+ WET+ K GLG+RRL N A + K W I +L V+ +Y
Sbjct: 393 YHAVGWETMSKPKTIYGLGLRRLDVMNKACIMKLGWSIYSGSNSLCTEVMRGKY 232
>BG584442
Length = 775
Score = 46.6 bits (109), Expect = 2e-05
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +1
Query: 39 ILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFWGGCEDIRK-ITWIKWETVCSRKG 97
+++K L SI Y +S F + + +E + N F W + RK + W+ E + K
Sbjct: 430 VMIKYALQSISSYVMSIFLLLNSQVDEIEKIMNTFSWVHVGENRKGMHWMS*EKLFVHKN 609
Query: 98 EGGLGVRRLREFNLALLGKWWWRILQERGTLW 129
GG+G FN+ +LGK L R TL+
Sbjct: 610 YGGMGFTDFTTFNIPMLGKQV*SFLLNRTTLF 705
>TC82763
Length = 1376
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/80 (31%), Positives = 40/80 (49%)
Frame = +1
Query: 88 KWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCARYGEEGGRLCCS 147
KW +C R GG+ +R LR FN+A + W + E + + VL +YG + CS
Sbjct: 241 KWNWIC-RPIRGGIRIRNLRFFNIA-VR**SWTLKTETNSFHFMVLFHKYGSWLEGVNCS 414
Query: 148 CRDGGSVWWQTILDVRDGVG 167
S+WW+ + + G+G
Sbjct: 415 ----SSLWWRYLSSIDTGMG 462
>AI737603
Length = 531
Score = 36.6 bits (83), Expect = 0.016
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 156 WQTILDVRDGVGQIDSGWMLDNISRRVGNGLST 188
W+ + +R GVG + GW +NI R VG G ST
Sbjct: 104 WRMLSAIRSGVGSGEGGWFEENIRRMVGGGSST 6
>TC82948
Length = 705
Score = 35.8 bits (81), Expect = 0.027
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 18/119 (15%)
Frame = +3
Query: 83 KITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRV---------- 132
K+ + WE VC EG LG+R L + N AL K W ++ + WY
Sbjct: 255 KVVKVSWEKVCRPIKEGSLGIRSLSKLNEALNLKLCWDMMISK-EQWYAFMRHNRALLGH 431
Query: 133 ------LCARYGEEGGRLCCSCRDGGSV--WWQTILDVRDGVGQIDSGWMLDNISRRVG 183
LC + E L C + W+ ++++ + D W + R VG
Sbjct: 432 IDFMCSLCFKSFESTHHLFFECSVSVQIWDWFSNLINLNFHINNTDDLWRI--CDREVG 602
>BF006686
Length = 325
Score = 35.8 bits (81), Expect = 0.027
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 10 LAFWYPLVDRIKRRLSDWKSRNLSMGGRLILL 41
L W PL++ + + L W ++ LS GGR++LL
Sbjct: 228 LPMWEPLLEHVNKMLKSWGNKLLSFGGRIVLL 323
>AJ497561 weakly similar to GP|10140689|gb putative non-LTR retroelement
reverse transcriptase {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 621
Score = 32.0 bits (71), Expect = 0.39
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +3
Query: 88 KWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQE 124
++ + K GGLG++ +EFN+++LGK W++L +
Sbjct: 300 EFNNLARHKSVGGLGLQN-QEFNISMLGKQRWKLLSQ 407
>BF634212 weakly similar to GP|10798748|dbj elicitor inducible gene product
EIG-I24 {Nicotiana tabacum}, partial (14%)
Length = 385
Score = 29.6 bits (65), Expect = 1.9
Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 2/56 (3%)
Frame = -1
Query: 89 WETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCARY--GEEGG 142
W V S +GE G RR R + G WWW + + G++W C R G EGG
Sbjct: 211 WRRVGSNEGEFLRGRRR*R*RDHG--GGWWW-LCKRGGSVWLY*GCGRCRGGREGG 53
>TC76721 homologue to GP|8132441|gb|AAF73291.1| extensin {Pisum sativum},
partial (46%)
Length = 674
Score = 27.3 bits (59), Expect(2) = 2.4
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Frame = -3
Query: 117 WWWRILQERGTLWY-----RVLCARYGEEGGRLCCSC 148
WWWR++ R W+ +C G +G R C C
Sbjct: 147 WWWRVVVVRLWWWWWR*IDVAVC*SLGWQGKRDYCQC 37
Score = 20.4 bits (41), Expect(2) = 2.4
Identities = 5/8 (62%), Positives = 6/8 (74%)
Frame = -3
Query: 113 LLGKWWWR 120
+L WWWR
Sbjct: 258 ILVNWWWR 235
>BF650593
Length = 486
Score = 28.9 bits (63), Expect = 3.3
Identities = 13/32 (40%), Positives = 18/32 (55%)
Frame = +1
Query: 128 LWYRVLCARYGEEGGRLCCSCRDGGSVWWQTI 159
LW+R L +YG G + R G S+WW+ I
Sbjct: 88 LWFRALVNKYGLNRGSITIENR-GVSLWWKDI 180
>TC86931 homologue to GP|9758482|dbj|BAB09011.1 gene_id:K11J9.20~unknown
protein {Arabidopsis thaliana}, partial (80%)
Length = 1312
Score = 28.9 bits (63), Expect = 3.3
Identities = 14/54 (25%), Positives = 24/54 (43%), Gaps = 3/54 (5%)
Frame = +3
Query: 43 PVLSSIPVYFLSFFKAPSGIISTLESLF---NAFFWGGCEDIRKITWIKWETVC 93
P++ SI F F P ++ L + N+F+W C + W +W +C
Sbjct: 528 PIIHSILASF--DFSKPQAVLRNLFFSY*WDNSFWWSPCSEFGA*AWNRWHILC 683
>TC80043 similar to GP|9759561|dbj|BAB11163.1 MtN21 nodulin protein-like
{Arabidopsis thaliana}, partial (28%)
Length = 1421
Score = 28.5 bits (62), Expect = 4.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 169 IDSGWMLDNISRRVGNGLSTLFWVDPW 195
I+ W+ +I++ V NG T FW + W
Sbjct: 703 INKNWLSGSITKVVRNGRDTSFWSEKW 783
>BF642399 similar to PIR|T10863|T10 extensin precursor - kidney bean, partial
(33%)
Length = 653
Score = 28.1 bits (61), Expect = 5.6
Identities = 12/38 (31%), Positives = 18/38 (46%), Gaps = 5/38 (13%)
Frame = -1
Query: 116 KWWWRILQERGTLWY-----RVLCARYGEEGGRLCCSC 148
+WWWR++ R W+ +C G +G R C C
Sbjct: 155 RWWWRVVVVRLWWWWWR*IDVAVC*SLGWQGKRDYCQC 42
>TC76718 homologue to GP|8132441|gb|AAF73291.1| extensin {Pisum sativum},
partial (63%)
Length = 712
Score = 28.1 bits (61), Expect = 5.6
Identities = 12/38 (31%), Positives = 18/38 (46%), Gaps = 5/38 (13%)
Frame = -2
Query: 116 KWWWRILQERGTLWY-----RVLCARYGEEGGRLCCSC 148
+WWWR++ R W+ +C G +G R C C
Sbjct: 180 RWWWRVVVVRLWWWWWR*IDVAVC*SLGWQGKRDYCQC 67
>BQ141029 similar to GP|8132441|gb| extensin {Pisum sativum}, partial (54%)
Length = 613
Score = 28.1 bits (61), Expect = 5.6
Identities = 12/38 (31%), Positives = 18/38 (46%), Gaps = 5/38 (13%)
Frame = -1
Query: 116 KWWWRILQERGTLWY-----RVLCARYGEEGGRLCCSC 148
+WWWR++ R W+ +C G +G R C C
Sbjct: 163 RWWWRVVVVRLWWWWWR*IDVAVC*SLGWQGKRDYCQC 50
>TC93373 similar to GP|3676071|emb|CAA76979.1 ERG protein {Arabidopsis
thaliana}, partial (4%)
Length = 700
Score = 28.1 bits (61), Expect = 5.6
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = -3
Query: 116 KWW---WRILQERGTLWYRVLCARYGEEGGRLCCSCRDGGSVWWQTILD 161
+WW WR++ + E GG CC DGG +WW +LD
Sbjct: 188 RWW*RRWRMMTD--------------ENGG--CC---DGGRMWWCGVLD 99
>BE316110 similar to PIR|T06782|T067 extensin - soybean, partial (19%)
Length = 263
Score = 27.7 bits (60), Expect = 7.3
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 4/42 (9%)
Frame = -3
Query: 111 LALLGKWWWRILQERGTLWYR----VLCARYGEEGGRLCCSC 148
L L+ WWWR + W+R +C G +G R C C
Sbjct: 168 LVLVNWWWWRWIFIWLLRWWR*IDVAVC*SLGWQGKRDYCQC 43
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.350 0.159 0.603
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,542,847
Number of Sequences: 36976
Number of extensions: 254529
Number of successful extensions: 2902
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2888
length of query: 366
length of database: 9,014,727
effective HSP length: 97
effective length of query: 269
effective length of database: 5,428,055
effective search space: 1460146795
effective search space used: 1460146795
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 59 (27.3 bits)
Medicago: description of AC144345.7