BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC143341.11 - phase: 0
(289 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC91918 homologue to GP|9369375|gb|AAF87124.1| F10A5.29 {Arabido... 126 8e-30
TC88292 similar to GP|8346773|emb|CAB93939.1 AP2-domain DNA-bind... 123 7e-29
TC83392 similar to PIR|T51833|T51833 transcription factor DREB2A... 117 7e-27
TC80613 similar to GP|8346773|emb|CAB93939.1 AP2-domain DNA-bind... 115 1e-26
TC77128 similar to GP|13877779|gb|AAK43967.1 putative AP2 domain... 104 5e-23
TC86129 similar to GP|8571476|gb|AAF76898.1| apetala2 domain-con... 101 3e-22
AL379826 homologue to GP|8346773|emb| AP2-domain DNA-binding pro... 91 7e-19
AW559374 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabid... 90 9e-19
TC76795 similar to GP|18496063|emb|CAD21849. ethylene responsive... 90 9e-19
TC78789 homologue to PIR|T48580|T48580 hypothetical protein T31B... 90 1e-18
TC76517 similar to GP|11994632|dbj|BAB02769. AP2 domain transcri... 90 1e-18
AW685524 homologue to GP|15982737|gb| AT4g23750/F9D16_220 {Arabi... 88 3e-18
TC90274 similar to GP|10177219|dbj|BAB10294. contains similarity... 88 3e-18
AL366881 similar to PIR|T00399|T003 probable AP2 domain transcri... 87 6e-18
BF650547 similar to GP|9758388|dbj| AP2 domain transcription fac... 87 7e-18
TC90582 similar to GP|17381278|gb|AAL36057.1 AT4g34410/F10M10_18... 86 1e-17
TC76792 similar to GP|3264767|gb|AAC24587.1| AP2 domain containi... 86 1e-17
TC78355 homologue to GP|10177606|dbj|BAB10953. TINY-like protein... 86 2e-17
BG586667 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabid... 86 2e-17
TC81407 homologue to GP|18650662|gb|AAL75809.1 ethylene response... 86 2e-17
>TC91918 homologue to GP|9369375|gb|AAF87124.1| F10A5.29 {Arabidopsis
thaliana}, partial (38%)
Length = 1171
Score = 126 bits (317), Expect = 8e-30
Identities = 57/83 (68%), Positives = 67/83 (80%)
Frame = +2
Query: 14 KKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEA 73
+KG RGKGGP+NASC Y+GVRQRTWGKWVAEIREP + RLWLG+F T+ EAA+AYD A
Sbjct: 74 RKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAA 253
Query: 74 ARRLYGPDAYLNLPHMQTHSNST 96
AR+LYG DA LNLP + T +T
Sbjct: 254 ARKLYGSDAKLNLPELSTPPQNT 322
>TC88292 similar to GP|8346773|emb|CAB93939.1 AP2-domain DNA-binding protein
{Catharanthus roseus}, partial (28%)
Length = 1847
Score = 123 bits (309), Expect = 7e-29
Identities = 56/87 (64%), Positives = 69/87 (78%)
Frame = +1
Query: 6 KKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEE 65
+K+P K KKG +GKGGPQN+ +YRGVRQRTWGKWVAEIREP + +RLWLG+F TA+E
Sbjct: 358 RKAPAKGSKKGCMKGKGGPQNSENKYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAQE 537
Query: 66 AAMAYDEAARRLYGPDAYLNLPHMQTH 92
AA+AYD AAR +YGP A LN P + +
Sbjct: 538 AALAYDYAARAMYGPSARLNFPDISDY 618
>TC83392 similar to PIR|T51833|T51833 transcription factor DREB2A drought
induced [validated] - Arabidopsis thaliana, partial
(22%)
Length = 742
Score = 117 bits (292), Expect = 7e-27
Identities = 57/100 (57%), Positives = 68/100 (68%), Gaps = 7/100 (7%)
Frame = +3
Query: 3 DNSKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREP-------KKRTRL 55
D K P K +KG RGKGGPQN+ C +RGVRQR WGKWVAEIREP +K RL
Sbjct: 165 DKIHKVPAKGSRKGCMRGKGGPQNSDCNFRGVRQRMWGKWVAEIREPINGKHVGEKANRL 344
Query: 56 WLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHMQTHSNS 95
WLG+F TA +AA+AYD+AA+ +YGP A LN P S+S
Sbjct: 345 WLGTFTTAHDAALAYDKAAKAMYGPSARLNFPDGSPSSSS 464
>TC80613 similar to GP|8346773|emb|CAB93939.1 AP2-domain DNA-binding protein
{Catharanthus roseus}, partial (22%)
Length = 901
Score = 115 bits (289), Expect = 1e-26
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = +1
Query: 6 KKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEE 65
+K K KKG +GKGGP+N+ C YRGVRQRTWGKWV+EIREP + +RLWLG+F TA
Sbjct: 265 RKVAAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVSEIREPNRGSRLWLGTFTTAIG 444
Query: 66 AAMAYDEAARRLYGPDAYLNLPHM 89
AA+AYDEAAR +YG A LN P++
Sbjct: 445 AALAYDEAARAMYGSRARLNFPNV 516
>TC77128 similar to GP|13877779|gb|AAK43967.1 putative AP2 domain-containing
protein {Arabidopsis thaliana}, partial (44%)
Length = 1829
Score = 104 bits (259), Expect = 5e-23
Identities = 66/147 (44%), Positives = 86/147 (57%), Gaps = 4/147 (2%)
Frame = +3
Query: 31 YRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHMQ 90
YRGVRQR WGKWVAEIR PK RTRLWLG+F TAEEAA+AYD+AA +L G A LN P+++
Sbjct: 924 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLK 1103
Query: 91 THSNSTM--KTGKFKWLPSKNFISMFPSC-GLLNVNAQPSVHLIHQR-LQEFKQNAVVAS 146
H S + + G+FK LPS + C GL + Q + + K ++ V S
Sbjct: 1104 -HQGSIIGGEFGEFKPLPSSVDAKLQAICEGLAEMQKQGKAEKPKKMPASKAKASSKVVS 1280
Query: 147 QSSFSSSSNDPKAEEIQKVDSKKSHTE 173
+ S D + EE KV++ TE
Sbjct: 1281 KESVDDLKKDSEPEECCKVEAVSVITE 1361
>TC86129 similar to GP|8571476|gb|AAF76898.1| apetala2 domain-containing
protein {Atriplex hortensis}, partial (41%)
Length = 2500
Score = 101 bits (252), Expect = 3e-22
Identities = 62/121 (51%), Positives = 72/121 (59%)
Frame = +2
Query: 3 DNSKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFAT 62
+NS + L P K P + G P + YRGVRQR WGKWVAEIR PK RTRLWLG+F T
Sbjct: 1475 NNSSLNFLGP-KPIPMKQPGVPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDT 1651
Query: 63 AEEAAMAYDEAARRLYGPDAYLNLPHMQTHSNSTMKTGKFKWLPSKNFISMFPSCGLLNV 122
AEEAA+AYD AA RL G A LN P+M+ M G+FK L S + C L
Sbjct: 1652 AEEAALAYDRAAYRLRGDFARLNFPNMKDQQQGGM-FGEFKVLHSSIDAKLDAICESLGN 1828
Query: 123 N 123
N
Sbjct: 1829 N 1831
>AL379826 homologue to GP|8346773|emb| AP2-domain DNA-binding protein
{Catharanthus roseus}, partial (16%)
Length = 491
Score = 90.5 bits (223), Expect = 7e-19
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = +3
Query: 6 KKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATA 63
+K P K KKG +GKGGP+N+ C YRGVRQRTWGKWVAEIREP + RLWLG+F+ A
Sbjct: 309 RKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFSNA 482
>AW559374 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabidopsis
thaliana}, partial (27%)
Length = 732
Score = 90.1 bits (222), Expect = 9e-19
Identities = 42/71 (59%), Positives = 50/71 (70%)
Frame = +3
Query: 17 PTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARR 76
P K + A +YRGVRQR WGKW AEIR+P++ TR+WLG+F+TAEEAA AYD AA
Sbjct: 258 PEEKKQKQKRAKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFSTAEEAARAYDNAAIE 437
Query: 77 LYGPDAYLNLP 87
GP A LN P
Sbjct: 438 FRGPRAKLNFP 470
>TC76795 similar to GP|18496063|emb|CAD21849. ethylene responsive element
binding protein {Fagus sylvatica}, partial (32%)
Length = 966
Score = 90.1 bits (222), Expect = 9e-19
Identities = 67/202 (33%), Positives = 98/202 (48%), Gaps = 37/202 (18%)
Frame = +3
Query: 30 EYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHM 89
+YRG+RQR WGKW AEIR+P+K R+WLG+F TAEEAA AYD ARR+ G A +N P
Sbjct: 363 QYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEE 542
Query: 90 QTHSNS-TMKTGKFKWLPSKNFISMFPSCGLLN-------VNAQPSVHLIHQRLQEFKQN 141
+++S +KT L KN ++ F + N V +P V+ + F N
Sbjct: 543 APNASSKRLKTNSETQLLDKN-LNSFKCENIENYYSPVNQVEQRPLVNAQCANVGPFAGN 719
Query: 142 AVVAS--------QSSFSSSSND----------PKAEEIQKVDS-----------KKSHT 172
V + S +SS+S D PK EI V S + ++
Sbjct: 720 GVQLASSDVTAYFSSEYSSNSFDYPDLCWGEQGPKTPEISSVFSAPIEGESQKNLQSDNS 899
Query: 173 EDPLPKETIVQTSANKMLGDLQ 194
+D LP + + ++ L D++
Sbjct: 900 QDMLPMQNDSAKTHSEELADIE 965
>TC78789 homologue to PIR|T48580|T48580 hypothetical protein T31B5.150 -
Arabidopsis thaliana, partial (33%)
Length = 1112
Score = 89.7 bits (221), Expect = 1e-18
Identities = 47/98 (47%), Positives = 57/98 (57%)
Frame = +1
Query: 2 MDNSKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFA 61
M N + P +P T+ K YRGVRQR WGKW AEIR+PKK R+WLG+F
Sbjct: 292 MVNEESQPPQPLLDQETKKKP-------HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFD 450
Query: 62 TAEEAAMAYDEAARRLYGPDAYLNLPHMQTHSNSTMKT 99
TAE+AA+AYD+AA + G A LN P NS T
Sbjct: 451 TAEDAALAYDKAALKFKGTKAKLNFPERVVQCNSYSST 564
>TC76517 similar to GP|11994632|dbj|BAB02769. AP2 domain transcription
factor RAP2.3 {Arabidopsis thaliana}, partial (33%)
Length = 1290
Score = 89.7 bits (221), Expect = 1e-18
Identities = 44/82 (53%), Positives = 56/82 (67%)
Frame = +3
Query: 6 KKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEE 65
KK L +KG + GG + YRG+RQR WGKW AEIR+P++ R+WLG+F+TAEE
Sbjct: 504 KKQSLVTVEKGK-KSTGGKRARKNVYRGIRQRPWGKWAAEIRDPQQGVRVWLGTFSTAEE 680
Query: 66 AAMAYDEAARRLYGPDAYLNLP 87
AA AYD AA+R+ G A LN P
Sbjct: 681 AARAYDTAAKRIRGDKAKLNFP 746
>AW685524 homologue to GP|15982737|gb| AT4g23750/F9D16_220 {Arabidopsis
thaliana}, partial (21%)
Length = 666
Score = 88.2 bits (217), Expect = 3e-18
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = +2
Query: 26 NASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLN 85
N ++RGVRQR WGKW AEIR+P +R RLWLG+F TAEEAAM YD AA +L GPDA N
Sbjct: 446 NNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTN 625
>TC90274 similar to GP|10177219|dbj|BAB10294. contains similarity to AP2
domain transcription factor~gene_id:MPF21.9 {Arabidopsis
thaliana}, partial (32%)
Length = 750
Score = 88.2 bits (217), Expect = 3e-18
Identities = 49/103 (47%), Positives = 58/103 (55%)
Frame = +3
Query: 27 ASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNL 86
A +YRGVRQR WGKW AEIR+P K R+WLG+F TAE AA AYDEAA R G A LN
Sbjct: 153 AKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNF 332
Query: 87 PHMQTHSNSTMKTGKFKWLPSKNFISMFPSCGLLNVNAQPSVH 129
P T N T +W S + S+ + + P VH
Sbjct: 333 PENVTLRNPPPATTTTQWNVSNSPSSIVS----ITTSTDPVVH 449
>AL366881 similar to PIR|T00399|T003 probable AP2 domain transcription factor
[imported] - Arabidopsis thaliana, partial (26%)
Length = 477
Score = 87.4 bits (215), Expect = 6e-18
Identities = 41/85 (48%), Positives = 55/85 (64%)
Frame = +1
Query: 5 SKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAE 64
+K +P KK R + YRGVR R WGKWV+EIREP+K++R+WLG++ TAE
Sbjct: 178 TKNNPQNGNKKSKKRERNENDTKHPTYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAE 357
Query: 65 EAAMAYDEAARRLYGPDAYLNLPHM 89
AA A+D AA + G AYLN P++
Sbjct: 358 MAARAHDVAALAIKGHSAYLNFPNL 432
>BF650547 similar to GP|9758388|dbj| AP2 domain transcription factor-like
{Arabidopsis thaliana}, partial (24%)
Length = 418
Score = 87.0 bits (214), Expect = 7e-18
Identities = 43/73 (58%), Positives = 50/73 (67%)
Frame = -1
Query: 31 YRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHMQ 90
YRGVRQR WGKW AEIR+PKK R+WLG+F TAE AA AYDEAA R G A LN P +
Sbjct: 385 YRGVRQRPWGKWAAEIRDPKKGARVWLGTFETAEAAATAYDEAALRFKGNKAKLNFPRLI 206
Query: 91 THSNSTMKTGKFK 103
++ S K + K
Sbjct: 205 SNLPSDPKPPRNK 167
>TC90582 similar to GP|17381278|gb|AAL36057.1 AT4g34410/F10M10_180
{Arabidopsis thaliana}, partial (29%)
Length = 979
Score = 86.3 bits (212), Expect = 1e-17
Identities = 39/63 (61%), Positives = 46/63 (72%)
Frame = +2
Query: 25 QNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYL 84
+ A +YRGVRQR WGKW AEIR+P++ R+WLG+F TAEEAA AYD AA GP A L
Sbjct: 323 KRAKKKYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAEEAARAYDNAAIEFRGPRAKL 502
Query: 85 NLP 87
N P
Sbjct: 503 NFP 511
>TC76792 similar to GP|3264767|gb|AAC24587.1| AP2 domain containing protein
{Prunus armeniaca}, partial (49%)
Length = 1729
Score = 86.3 bits (212), Expect = 1e-17
Identities = 48/119 (40%), Positives = 68/119 (56%), Gaps = 1/119 (0%)
Frame = +3
Query: 30 EYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLP-H 88
+YRG+RQR WGKW AEIR+P+K R+WLG+F TAEEAA AYD ARR+ G A +N P
Sbjct: 525 QYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPEE 704
Query: 89 MQTHSNSTMKTGKFKWLPSKNFISMFPSCGLLNVNAQPSVHLIHQRLQEFKQNAVVASQ 147
S+ +K L + N S P+ G N ++ + + + +Q +V +Q
Sbjct: 705 APVASSKRLKKNPEMQLLNDNLNSFKPN-GNQMFNFSENMENYYSPMDQVEQKPLVNNQ 878
>TC78355 homologue to GP|10177606|dbj|BAB10953. TINY-like protein
{Arabidopsis thaliana}, partial (46%)
Length = 859
Score = 85.9 bits (211), Expect = 2e-17
Identities = 43/88 (48%), Positives = 53/88 (59%), Gaps = 2/88 (2%)
Frame = +2
Query: 15 KGPTRGKGGPQNASCE--YRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDE 72
KG + GG E Y+G+R R WGKWVAEIREP KR+R+WLGS++T AA AYD
Sbjct: 212 KGERKRNGGGVGVDGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPIAAARAYDT 391
Query: 73 AARRLYGPDAYLNLPHMQTHSNSTMKTG 100
A L GP A LN P + N+ + G
Sbjct: 392 AVFYLRGPSARLNFPELLNGENNAVVGG 475
>BG586667 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabidopsis
thaliana}, partial (28%)
Length = 740
Score = 85.9 bits (211), Expect = 2e-17
Identities = 39/61 (63%), Positives = 45/61 (72%)
Frame = +3
Query: 27 ASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNL 86
A +YRGVRQR WGKW AEIR+P++ R+WLG+F TAEEAA AYD AA GP A LN
Sbjct: 117 AKKKYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAEEAARAYDNAAIEFRGPRAKLNF 296
Query: 87 P 87
P
Sbjct: 297 P 299
>TC81407 homologue to GP|18650662|gb|AAL75809.1 ethylene response factor 1
{Lycopersicon esculentum}, partial (59%)
Length = 770
Score = 85.5 bits (210), Expect = 2e-17
Identities = 38/58 (65%), Positives = 45/58 (77%)
Frame = +1
Query: 31 YRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPH 88
YRGVRQR WG WV+EIR P +TR+WLG+F TAE+AA AYDEAAR + GP A N P+
Sbjct: 73 YRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPY 246
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.312 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,811,027
Number of Sequences: 36976
Number of extensions: 114316
Number of successful extensions: 639
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of query: 289
length of database: 9,014,727
effective HSP length: 95
effective length of query: 194
effective length of database: 5,502,007
effective search space: 1067389358
effective search space used: 1067389358
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC143341.11