BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC143339.10 + phase: 0 /pseudo
(349 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG647396 weakly similar to PIR|T50791|T50 hypothetical protein T... 513 e-146
TC92438 homologue to GP|19698919|gb|AAL91195.1 unknown protein {... 91 7e-19
TC85757 similar to PIR|T09648|T09648 nucleolin homolog nuM1 - al... 53 2e-07
TC78543 similar to PIR|T14545|T14545 probable sugar transporter ... 31 0.62
TC78220 similar to GP|20260460|gb|AAM13128.1 unknown protein {Ar... 31 0.62
TC77119 similar to PIR|D96533|D96533 ARP protein [imported] - Ar... 28 4.0
CB891094 similar to PIR|A96730|A967 hypothetical protein F5A18.2... 28 4.0
TC77472 similar to PIR|T05076|T05076 hypothetical protein T6K21.... 28 6.9
TC80545 similar to PIR|C90082|C90082 hypothetical protein orf151... 27 9.0
>BG647396 weakly similar to PIR|T50791|T50 hypothetical protein T30N20_90 -
Arabidopsis thaliana, partial (38%)
Length = 787
Score = 513 bits (1321), Expect = e-146
Identities = 255/256 (99%), Positives = 255/256 (99%)
Frame = +3
Query: 7 STTTITKTNNKYPLLSILTEPIEWLTMLTNNLNPTFIAGIFLVYGIGQGFTGSLFKLVTD 66
STTTITKTNNK PLLSILTEPIEWLTMLTNNLNPTFIAGIFLVYGIGQGFTGSLFKLVTD
Sbjct: 18 STTTITKTNNKNPLLSILTEPIEWLTMLTNNLNPTFIAGIFLVYGIGQGFTGSLFKLVTD 197
Query: 67 YYWKDVQKLQPSTVQLYVGIYFIPWILKPIWGILTDAFPILGYRRRPYFVVAGVVGTVSA 126
YYWKDVQKLQPSTVQLYVGIYFIPWILKPIWGILTDAFPILGYRRRPYFVVAGVVGTVSA
Sbjct: 198 YYWKDVQKLQPSTVQLYVGIYFIPWILKPIWGILTDAFPILGYRRRPYFVVAGVVGTVSA 377
Query: 127 TIVAVGGEVSVVAALMCFVGVSASLAIADVTIDACIARNSIEVPGLAPDLQSLCGFCSGS 186
TIVAVGGEVSVVAALMCFVGVSASLAIADVTIDACIARNSIEVPGLAPDLQSLCGFCSGS
Sbjct: 378 TIVAVGGEVSVVAALMCFVGVSASLAIADVTIDACIARNSIEVPGLAPDLQSLCGFCSGS 557
Query: 187 GALLGYLASGFFVHHLGPQGSLGLMAVFPALTIVLGFVIYEKRTTGLHNEKKKGVVENVG 246
GALLGYLASGFFVHHLGPQGSLGLMAVFPALTIVLGFVIYEKRTTGLHNEKKKGVVENVG
Sbjct: 558 GALLGYLASGFFVHHLGPQGSLGLMAVFPALTIVLGFVIYEKRTTGLHNEKKKGVVENVG 737
Query: 247 TTIRSMYKTIKYPQAW 262
TTIRSMYKTIKYPQAW
Sbjct: 738 TTIRSMYKTIKYPQAW 785
>TC92438 homologue to GP|19698919|gb|AAL91195.1 unknown protein {Arabidopsis
thaliana}, partial (28%)
Length = 695
Score = 90.9 bits (224), Expect = 7e-19
Identities = 56/166 (33%), Positives = 94/166 (55%), Gaps = 1/166 (0%)
Frame = +2
Query: 32 TMLTNNLNPTFIAGIFLVYGIGQGFTGSLFKLVTDYYWKDVQKLQPSTVQLYVGIYFIPW 91
T+ +L+P +A + +VY + QG G L +L +Y KD L P+ + GI PW
Sbjct: 200 TLFGVDLSPDTVA-VAMVYFV-QGVLG-LARLAVSFYLKDDLHLDPAEAAVISGISAFPW 370
Query: 92 ILKPIWGILTDAFPILGYRRRPYFVVAGVVGTVSATIVAVGGEVSVVAALMCFVGVSASL 151
++KP++G ++D+ P+ GYRRR Y V++G++G +S +++A + S +A C + S S+
Sbjct: 371 LVKPLYGFISDSIPLFGYRRRSYLVLSGLLGALSWSLMATSVD-SKYSAAFCILLGSLSV 547
Query: 152 AIADVTIDACIA-RNSIEVPGLAPDLQSLCGFCSGSGALLGYLASG 196
A +DV +D+ + R E + LQSLC S G ++ SG
Sbjct: 548 AFSDVVVDSMVVERARGESQSTSGSLQSLCWGSSXFGGIVSSYFSG 685
>TC85757 similar to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (10%)
Length = 1087
Score = 53.1 bits (126), Expect = 2e-07
Identities = 22/50 (44%), Positives = 38/50 (76%)
Frame = +3
Query: 298 EFVGIIYAIGAVASIIGVLIYHKYLKNYTFRNLVFYAQLLYAISGLLDLM 347
E +G I++I +V+S++G ++ LK+Y FR+L+F+ QLLY +SG+ DL+
Sbjct: 666 ESIGFIFSICSVSSLLGAILCQYALKDYAFRDLLFWTQLLYGLSGMFDLI 815
>TC78543 similar to PIR|T14545|T14545 probable sugar transporter protein -
beet, partial (93%)
Length = 1653
Score = 31.2 bits (69), Expect = 0.62
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 171 GLAPDLQSLCGFCSGSGALLGYLASGFFVHHLGPQGSLGLMAV 213
GL+ SL G S GA++G +ASG ++G +GSL + ++
Sbjct: 247 GLSVSEFSLFGSLSNVGAMVGAIASGQIAEYMGRKGSLMIASI 375
>TC78220 similar to GP|20260460|gb|AAM13128.1 unknown protein {Arabidopsis
thaliana}, partial (48%)
Length = 1081
Score = 31.2 bits (69), Expect = 0.62
Identities = 30/104 (28%), Positives = 48/104 (45%), Gaps = 4/104 (3%)
Frame = +1
Query: 176 LQSLCGFCSGSGALLGYLASGFFVHHLGPQGSLGLMA---VFPALTIVLGFVIYEKRTTG 232
L+SL FC+ G GF V HL G + A +F ++ I G + +
Sbjct: 316 LESLLKFCAACGV-------GFVVQHLLFMGEWVVGAFINLFGSIAINFGTNLLKLG--- 465
Query: 233 LHNEKKKGVVENVGTTIRSMYKTIKYPQAWKPS-LYMFLSLALN 275
HNE+++ ++ + G + K I Y Q+W+ L+ FL LN
Sbjct: 466 -HNERERHLLGSDGVHGKVTLKPIIYFQSWRIGILFFFLGNCLN 594
>TC77119 similar to PIR|D96533|D96533 ARP protein [imported] - Arabidopsis
thaliana, partial (93%)
Length = 2277
Score = 28.5 bits (62), Expect = 4.0
Identities = 19/60 (31%), Positives = 33/60 (54%), Gaps = 3/60 (5%)
Frame = +2
Query: 211 MAVFPALTIVLGFVIYEKRTTGLHNEKKKG---VVENVGTTIRSMYKTIKYPQAWKPSLY 267
M V PA I GF+I E +TGL ++KK+ V+++ G + + + YP+ + L+
Sbjct: 797 MRVXPA--IAYGFLIVEV*STGLPHQKKQSTWYVLDD*GEELNTKRHQLNYPRVLRK*LF 970
>CB891094 similar to PIR|A96730|A967 hypothetical protein F5A18.23 [imported]
- Arabidopsis thaliana, partial (11%)
Length = 820
Score = 28.5 bits (62), Expect = 4.0
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +3
Query: 315 VLIYHKYLKNYTFRNLVFYAQLLYAISGLLDLMC 348
VLIY + N FR+L+F LL A L DLMC
Sbjct: 477 VLIYLRLCFNSAFRHLLFQEWLLRA*YRL*DLMC 578
>TC77472 similar to PIR|T05076|T05076 hypothetical protein T6K21.80 -
Arabidopsis thaliana, partial (68%)
Length = 1426
Score = 27.7 bits (60), Expect = 6.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 198 FVHH-LGPQGSLGLMAVFPALTIVLGFVIYEKRTT 231
F+HH P S+ M +FP L+ +GF +Y + T
Sbjct: 1224 FLHHSFLPNYSISQMFIFPNLSTPIGFFLYTQTNT 1120
>TC80545 similar to PIR|C90082|C90082 hypothetical protein orf151 [imported]
- Guillardia theta nucleomorph, partial (11%)
Length = 975
Score = 27.3 bits (59), Expect = 9.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 257 KYPQAWKPSLYMFLSLALNVTTHEGHFYWY 286
K PQ KPS Y F+ + L + + H Y++
Sbjct: 19 KLPQKQKPSYYSFIPIILILIKNNKHVYFF 108
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.325 0.141 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,160,460
Number of Sequences: 36976
Number of extensions: 156306
Number of successful extensions: 980
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of query: 349
length of database: 9,014,727
effective HSP length: 97
effective length of query: 252
effective length of database: 5,428,055
effective search space: 1367869860
effective search space used: 1367869860
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Medicago: description of AC143339.10