BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142498.2 + phase: 0 /pseudo
(193 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC88368 similar to GP|15810487|gb|AAL07131.1 unknown protein {Ar... 387 e-108
TC76784 similar to PIR|G84825|G84825 probable CCCH-type zinc fin... 230 3e-61
TC86327 similar to GP|14335106|gb|AAK59832.1 At2g41900/T6D20.20 ... 153 5e-38
TC80408 similar to GP|14335106|gb|AAK59832.1 At2g41900/T6D20.20 ... 110 3e-25
TC77687 similar to PIR|D84581|D84581 probable CCCH-type zinc fin... 61 3e-10
TC86255 similar to PIR|D84581|D84581 probable CCCH-type zinc fin... 60 7e-10
TC87072 similar to PIR|D84581|D84581 probable CCCH-type zinc fin... 57 3e-09
AW585124 GP|13487732|gb ORF1 {TT virus}, partial (2%) 44 4e-05
TC86267 similar to PIR|T48498|T48498 hypothetical protein T28J14... 32 0.12
TC86618 similar to PIR|T49159|T49159 hypothetical protein T20N10... 31 0.26
TC90259 weakly similar to GP|6175185|gb|AAF04911.1| ankyrin-like... 31 0.34
TC89429 similar to GP|15010672|gb|AAK73995.1 AT3g23280/K14B15_17... 31 0.34
TC87380 similar to GP|18700097|gb|AAL77660.1 At1g14000/F7A19_9 {... 29 1.3
TC79526 weakly similar to GP|14586362|emb|CAC42893. putative pro... 27 4.9
TC88575 weakly similar to GP|21554034|gb|AAM63115.1 unknown {Ara... 27 4.9
TC85652 similar to PIR|S44261|S44261 SRG1 protein - Arabidopsis ... 27 6.5
>TC88368 similar to GP|15810487|gb|AAL07131.1 unknown protein {Arabidopsis
thaliana}, partial (25%)
Length = 665
Score = 387 bits (993), Expect = e-108
Identities = 191/191 (100%), Positives = 191/191 (100%)
Frame = +3
Query: 1 MENKFQNSTLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIA 60
MENKFQNSTLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIA
Sbjct: 30 MENKFQNSTLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIA 209
Query: 61 SLFGSIRVVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGADVDFL 120
SLFGSIRVVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGADVDFL
Sbjct: 210 SLFGSIRVVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGADVDFL 389
Query: 121 DEVVRQKLSVANSKELVAEKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTH 180
DEVVRQKLSVANSKELVAEKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTH
Sbjct: 390 DEVVRQKLSVANSKELVAEKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTH 569
Query: 181 DWTECPFVHPG 191
DWTECPFVHPG
Sbjct: 570 DWTECPFVHPG 602
>TC76784 similar to PIR|G84825|G84825 probable CCCH-type zinc finger protein
[imported] - Arabidopsis thaliana, partial (56%)
Length = 2631
Score = 230 bits (586), Expect = 3e-61
Identities = 130/230 (56%), Positives = 151/230 (65%), Gaps = 39/230 (16%)
Frame = +3
Query: 1 MENKFQ-----NSTLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRT 55
ME+K Q +S LLELSA DD +AFKREV+EK DVNE GFWY R+IGSKKM EKRT
Sbjct: 261 MEDKLQMGIHNSSILLELSASDDFDAFKREVDEKDLDVNEEGFWYGRRIGSKKMESEKRT 440
Query: 56 PLMIASLFGSIRVVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGA 115
PLMIAS+FGS RVV+YI+ V+VN GS+ TALHCAVAGGS+ E+VKLLLDAGA
Sbjct: 441 PLMIASMFGSTRVVEYIVSAGKVDVNGVCGSDMATALHCAVAGGSEFLLEVVKLLLDAGA 620
Query: 116 DVDFLD----------------------EVVRQKLSVANSKELV--------AEKKDSG- 144
D D LD +V+ L S EL+ + KK+ G
Sbjct: 621 DADCLDASGNKPVDLIAPAFNSSSKSRRKVLEMFLRGEVSAELIQGEMDAPFSLKKEGGD 800
Query: 145 ---YAIDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
+ ID SLPDINNGV+ +DEFRMYSFKVK CSR Y+HDWTECPFVHPG
Sbjct: 801 KKEFPIDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPG 950
>TC86327 similar to GP|14335106|gb|AAK59832.1 At2g41900/T6D20.20
{Arabidopsis thaliana}, partial (50%)
Length = 3018
Score = 153 bits (386), Expect = 5e-38
Identities = 90/250 (36%), Positives = 126/250 (50%), Gaps = 66/250 (26%)
Frame = +2
Query: 8 STLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFGSIR 67
S+LLE ++ +D E FK ++ +NE GFWY R+ GS ++ E RTPLM+A+ +GSI
Sbjct: 377 SSLLEHASNNDFEDFKVALDSDASLINEVGFWYVRQKGSNQIVLEHRTPLMVAASYGSID 556
Query: 68 VVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGADVDFLDE----- 122
++K I+ +VN + G++ TALHCA + GS + + +KLLL AGAD++ +D
Sbjct: 557 ILKLILSYPEADVNFSCGTDKSTALHCAASSGSVNAVDAIKLLLSAGADINSVDANGKRP 736
Query: 123 --------VVRQKLSVANS--KELVAEKKDSGYAIDTS---------------------- 150
VV KL + +EL+++ G D S
Sbjct: 737 VDVIVVPIVVPHKLEGVKTILEELLSDSASEGSVDDCSLPLSLISSSPGSSAPLSSAENG 916
Query: 151 -----------------------------LPDINNGVFVTDEFRMYSFKVKTCSRGYTHD 181
LPDI N ++ TDEFRMYSFKV+ CSR Y+HD
Sbjct: 917 SPSSPVAPKFTDTAVNSTSEKKEYPVDPSLPDIKNSMYATDEFRMYSFKVRPCSRAYSHD 1096
Query: 182 WTECPFVHPG 191
WTECPFVHPG
Sbjct: 1097WTECPFVHPG 1126
>TC80408 similar to GP|14335106|gb|AAK59832.1 At2g41900/T6D20.20
{Arabidopsis thaliana}, partial (22%)
Length = 821
Score = 110 bits (275), Expect = 3e-25
Identities = 55/114 (48%), Positives = 80/114 (69%)
Frame = +3
Query: 8 STLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFGSIR 67
++LLEL+A +D+E FKR +E V+E G WY R+ GSK+M E+RTPLM+A+ +GSI
Sbjct: 351 ASLLELAANNDVEGFKRLIEYDPMSVDEVGLWYGRRKGSKQMVNEQRTPLMVAATYGSID 530
Query: 68 VVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGADVDFLD 121
V+K I + V++N G + TALHCA +GG+++ + VKLLL AGAD + +D
Sbjct: 531 VMKLIFSLSDVDINRPCGLDKSTALHCAASGGAENAVDAVKLLLAAGADPNSVD 692
>TC77687 similar to PIR|D84581|D84581 probable CCCH-type zinc finger protein
[imported] - Arabidopsis thaliana, partial (35%)
Length = 1096
Score = 60.8 bits (146), Expect = 3e-10
Identities = 23/39 (58%), Positives = 30/39 (75%)
Frame = +3
Query: 153 DINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
D+ VF TD+FRM+ FKV+ C RG +HDWT+CP+ HPG
Sbjct: 165 DLPIHVFSTDQFRMFEFKVRKCQRGRSHDWTDCPYSHPG 281
>TC86255 similar to PIR|D84581|D84581 probable CCCH-type zinc finger protein
[imported] - Arabidopsis thaliana, partial (47%)
Length = 1508
Score = 59.7 bits (143), Expect = 7e-10
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +3
Query: 149 TSLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
T+ D + D FRMY FK++ C+RG +HDWTECP+ HPG
Sbjct: 303 TAAADSTVDAYSCDHFRMYEFKIRRCARGRSHDWTECPYAHPG 431
>TC87072 similar to PIR|D84581|D84581 probable CCCH-type zinc finger protein
[imported] - Arabidopsis thaliana, partial (47%)
Length = 1599
Score = 57.4 bits (137), Expect = 3e-09
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +3
Query: 159 FVTDEFRMYSFKVKTCSRGYTHDWTECPFVHPG 191
+ D FRM+ FK++ C+RG +HDWTECPF HPG
Sbjct: 255 YSNDHFRMFEFKIRRCARGRSHDWTECPFSHPG 353
>AW585124 GP|13487732|gb ORF1 {TT virus}, partial (2%)
Length = 457
Score = 43.9 bits (102), Expect = 4e-05
Identities = 30/93 (32%), Positives = 41/93 (43%)
Frame = +3
Query: 16 IDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFGSIRVVKYIIET 75
+DD + KRE +EK D NE G + R+ G KK EKR GSIR ++
Sbjct: 165 LDDPDVPKREADEKDPDANEEGPRHGRRTGLKKTELEKRIFSTTVLTPGSIRAAEHTALV 344
Query: 76 NMVNVNMAIGSENVTALHCAVAGGSKSKFEIVK 108
+ N A G + V + GG + E K
Sbjct: 345 GKADANGARGLDTVIVSYRVAVGGLEPPSEAAK 443
>TC86267 similar to PIR|T48498|T48498 hypothetical protein T28J14.210 -
Arabidopsis thaliana, partial (81%)
Length = 2182
Score = 32.3 bits (72), Expect = 0.12
Identities = 25/80 (31%), Positives = 38/80 (47%)
Frame = +1
Query: 39 WYCRKIGSKKMCYEKRTPLMIASLFGSIRVVKYIIETNMVNVNMAIGSENVTALHCAVAG 98
++ RK+G+ C L+ A+ G + K ++E N + + LH A
Sbjct: 358 FFIRKMGNSFGCSASGERLVSAARDGDLVEAKMLLEFNPCLAKYSTFGGLNSPLHFAA-- 531
Query: 99 GSKSKFEIVKLLLDAGADVD 118
SK EIV LLL+ GADV+
Sbjct: 532 -SKGHNEIVALLLEKGADVN 588
>TC86618 similar to PIR|T49159|T49159 hypothetical protein T20N10.110 -
Arabidopsis thaliana, partial (41%)
Length = 909
Score = 31.2 bits (69), Expect = 0.26
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +3
Query: 57 LMIASLFGSIRVVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGAD 116
LM ++ G + ++ +IE+ V+VN + TALH A G +V+LLL+ GAD
Sbjct: 321 LMYSANEGDVDGIREVIESG-VSVNFR-DVDGRTALHIAACQGLS---HVVQLLLEKGAD 485
Query: 117 VD 118
VD
Sbjct: 486 VD 491
>TC90259 weakly similar to GP|6175185|gb|AAF04911.1| ankyrin-like protein
{Arabidopsis thaliana}, partial (41%)
Length = 682
Score = 30.8 bits (68), Expect = 0.34
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +3
Query: 53 KRTPLMIASLFGSIRVVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLD 112
KR L ASL G ++ Y+IE + +N +H A G + + K L+D
Sbjct: 249 KRGALHFASLEGQTQICSYLIEDLKLRINDKDDDGETALIHAARQGHTAT----AKYLID 416
Query: 113 AGAD 116
GAD
Sbjct: 417 HGAD 428
>TC89429 similar to GP|15010672|gb|AAK73995.1 AT3g23280/K14B15_17
{Arabidopsis thaliana}, partial (57%)
Length = 1190
Score = 30.8 bits (68), Expect = 0.34
Identities = 32/92 (34%), Positives = 47/92 (50%), Gaps = 2/92 (2%)
Frame = +1
Query: 45 GSKKMCYEKRTPLMIASLFGSI-RVVKYIIETNMVNVNM-AIGSENVTALHCAVAGGSKS 102
G + M E +TPL++A + + V K +IE NVN G + LH A G +S
Sbjct: 268 GLEWMDREGKTPLIVACMNPELYNVAKTLIELG-ANVNAYRPGRHAGSPLHHAAKRGLES 444
Query: 103 KFEIVKLLLDAGADVDFLDEVVRQKLSVANSK 134
IVKLLL GA+ +++ + L VA +K
Sbjct: 445 ---IVKLLLLHGANPLLMNDDCQTPLEVARAK 531
>TC87380 similar to GP|18700097|gb|AAL77660.1 At1g14000/F7A19_9 {Arabidopsis
thaliana}, partial (93%)
Length = 1601
Score = 28.9 bits (63), Expect = 1.3
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +3
Query: 51 YEKRTPLMIASLFGSIRVVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLL 110
Y+ RTPL +ASL G I V ++E +VN +N A A GSK K +++LL
Sbjct: 240 YDNRTPLHVASLHGWIDVANCLLEFG-ADVNAQDRWKNTP---LADAEGSK-KSNVIELL 404
Query: 111 LDAG 114
G
Sbjct: 405 KSKG 416
>TC79526 weakly similar to GP|14586362|emb|CAC42893. putative protein
{Arabidopsis thaliana}, partial (72%)
Length = 797
Score = 26.9 bits (58), Expect = 4.9
Identities = 33/119 (27%), Positives = 50/119 (41%)
Frame = +3
Query: 6 QNSTLLELSAIDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKKMCYEKRTPLMIASLFGS 65
Q T L ++A + + KG D+N EK TPL A L G
Sbjct: 321 QGRTALHMAAANGHVNIVEYLISKGADLNSENV-------------EKNTPLHWACLNGH 461
Query: 66 IRVVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGADVDFLDEVV 124
+ VVK +I NV++ + S T + AV G K E++ + +A A V+ +V
Sbjct: 462 VEVVKKLIIAG-ANVSV-LNSYERTPMDEAVTRG---KLEVMDAINEAEALVELRGALV 623
>TC88575 weakly similar to GP|21554034|gb|AAM63115.1 unknown {Arabidopsis
thaliana}, partial (76%)
Length = 917
Score = 26.9 bits (58), Expect = 4.9
Identities = 17/63 (26%), Positives = 33/63 (51%)
Frame = +2
Query: 60 ASLFGSIRVVKYIIETNMVNVNMAIGSENVTALHCAVAGGSKSKFEIVKLLLDAGADVDF 119
A+ G + ++ I+ +++ + + TALH G FE +LLL+ GA+++
Sbjct: 218 AATHGDLNALRLAIDNLSGSIDEPV-EDGDTALHLTCLYGH---FECAQLLLERGANLEA 385
Query: 120 LDE 122
+DE
Sbjct: 386 MDE 394
>TC85652 similar to PIR|S44261|S44261 SRG1 protein - Arabidopsis thaliana,
partial (50%)
Length = 1489
Score = 26.6 bits (57), Expect = 6.5
Identities = 13/51 (25%), Positives = 22/51 (42%)
Frame = -1
Query: 135 ELVAEKKDSGYAIDTSLPDINNGVFVTDEFRMYSFKVKTCSRGYTHDWTEC 185
E +A + +A+ + F T F F+ + S G+ DWT+C
Sbjct: 349 EEIARELQQCFALQARAQKVPIERFQTLTFYFVLFQAQVLSLGFNTDWTDC 197
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,288,946
Number of Sequences: 36976
Number of extensions: 57471
Number of successful extensions: 316
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of query: 193
length of database: 9,014,727
effective HSP length: 91
effective length of query: 102
effective length of database: 5,649,911
effective search space: 576290922
effective search space used: 576290922
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC142498.2