BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142224.1 - phase: 0
(309 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC78101 similar to GP|17381084|gb|AAL36354.1 unknown protein {Ar... 642 0.0
BG457583 similar to GP|13561982|gb flagelliform silk protein {Ar... 46 2e-05
TC77949 weakly similar to GP|11762218|gb|AAG40387.1 AT4g27520 {A... 42 4e-04
BQ144022 homologue to GP|22831315|dbj hypothetical protein~predi... 40 0.001
TC77828 similar to GP|16648867|gb|AAL24285.1 HSP associated prot... 38 0.006
TC80031 similar to GP|21327989|dbj|BAC00578. contains ESTs AU093... 36 0.016
TC81272 similar to PIR|T05225|T05225 extensin homolog F17I5.160 ... 36 0.016
AL372750 weakly similar to PIR|S14981|S149 extensin class I (clo... 35 0.028
TC81144 similar to PIR|T04462|T04462 hypothetical protein F4D11.... 35 0.028
NP212732 NP212732|AF106929.1|AAD39890.1 putative cell wall protein 35 0.037
TC86690 similar to GP|6041851|gb|AAF02160.1| unknown protein {Ar... 35 0.037
TC76346 similar to GP|16649017|gb|AAL24360.1 epsin-like protein ... 34 0.062
BQ135858 similar to GP|23491723|db formin homology protein A {Di... 34 0.082
BQ135612 similar to GP|15028978|emb type II keratin E2 {Oncorhyn... 34 0.082
TC93358 weakly similar to GP|7303636|gb|AAF58688.1| CG13214-PA {... 34 0.082
TC82136 similar to GP|22202729|dbj|BAC07386. putative snRNP prot... 34 0.082
BQ144499 similar to GP|20378854|gb| similar to quaking II {Mus m... 33 0.14
BQ151174 similar to GP|11036868|gb| PxORF73 peptide {Plutella xy... 33 0.14
TC88828 weakly similar to GP|15809950|gb|AAL06902.1 AT4g22740/T1... 33 0.14
TC84888 similar to GP|21322752|dbj|BAB78536. cold shock protein-... 32 0.31
>TC78101 similar to GP|17381084|gb|AAL36354.1 unknown protein {Arabidopsis
thaliana}, partial (58%)
Length = 1267
Score = 642 bits (1656), Expect = 0.0
Identities = 309/309 (100%), Positives = 309/309 (100%)
Frame = +1
Query: 1 MATDKSVLAVIRAARPTFRNQNDKIAFVVHSSFLASGYILTATGPQALSDTALSNPSNDE 60
MATDKSVLAVIRAARPTFRNQNDKIAFVVHSSFLASGYILTATGPQALSDTALSNPSNDE
Sbjct: 79 MATDKSVLAVIRAARPTFRNQNDKIAFVVHSSFLASGYILTATGPQALSDTALSNPSNDE 258
Query: 61 VSVDHWNELNDEYAFVYANSEKEGLKKVLVKCLVMNGKLLVHALSEGFKEPLHLEINVAD 120
VSVDHWNELNDEYAFVYANSEKEGLKKVLVKCLVMNGKLLVHALSEGFKEPLHLEINVAD
Sbjct: 259 VSVDHWNELNDEYAFVYANSEKEGLKKVLVKCLVMNGKLLVHALSEGFKEPLHLEINVAD 438
Query: 121 YAGEDGGSNFSQQFKNLDKLVKKIDADILSKLDGTAHASSSTKSSKTSDSTRPETSEPVP 180
YAGEDGGSNFSQQFKNLDKLVKKIDADILSKLDGTAHASSSTKSSKTSDSTRPETSEPVP
Sbjct: 439 YAGEDGGSNFSQQFKNLDKLVKKIDADILSKLDGTAHASSSTKSSKTSDSTRPETSEPVP 618
Query: 181 GFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFS 240
GFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFS
Sbjct: 619 GFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFS 798
Query: 241 GGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPRRPGFDAHPDLQHF 300
GGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPRRPGFDAHPDLQHF
Sbjct: 799 GGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPRRPGFDAHPDLQHF 978
Query: 301 RRDTDSDYI 309
RRDTDSDYI
Sbjct: 979 RRDTDSDYI 1005
>BG457583 similar to GP|13561982|gb flagelliform silk protein {Argiope
trifasciata}, partial (8%)
Length = 269
Score = 45.8 bits (107), Expect = 2e-05
Identities = 36/84 (42%), Positives = 37/84 (43%), Gaps = 2/84 (2%)
Frame = -2
Query: 198 PPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGL 257
PP G G PGPG G P RG GG GP R GG GG GGPG G +
Sbjct: 265 PPARGGPGG---PGPG-GPGPMRGGP--GGPGPGGPGPMRGGPGGPGGPPRGGPGGPGPM 104
Query: 258 PGAP--PGARFDPIGPPGVPGFEP 279
G P PG G PG PG P
Sbjct: 103 RGGPGGPGGPGPMRGGPGGPGGPP 32
Score = 45.1 bits (105), Expect = 4e-05
Identities = 38/97 (39%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Frame = -2
Query: 180 PGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDF-GGSMLVGPNDPRW 238
P G P GP PG P+ G G PGPG G P RG GG GP P
Sbjct: 262 PARGGPGGPGPGGPG----PMRGGPGG---PGPG-GPGPMRGGPGGPGGPPRGGPGGPGP 107
Query: 239 FSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVP 275
GG GG PG G + G P G P G PG P
Sbjct: 106 MRGGPGG-----PGGPGPMRGGPGGPGGPPRGGPGGP 11
Score = 30.0 bits (66), Expect = 1.2
Identities = 28/82 (34%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Frame = +3
Query: 210 PGPGAGMYPSR-GDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDP 268
PGP G P G G P PR G G GG PG PPG
Sbjct: 18 PGPPRGGPPGPPGPPRIGPGPPGPPGPPRIGPGPPGPPRGGPPG--------PPGPPRIG 173
Query: 269 IGPPGVPGFEPNRFARNPRRPG 290
GPPG P R P PG
Sbjct: 174 PGPPGPGPPGPPRIGPGPPGPG 239
>TC77949 weakly similar to GP|11762218|gb|AAG40387.1 AT4g27520 {Arabidopsis
thaliana}, partial (34%)
Length = 1297
Score = 41.6 bits (96), Expect = 4e-04
Identities = 40/131 (30%), Positives = 44/131 (33%), Gaps = 1/131 (0%)
Frame = +3
Query: 161 STKSSKTSDSTRPETSEPVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSR 220
S S S P S PVP +GP P +V PAG P P P+
Sbjct: 570 SPSGSPPSPVAIPPASSPVP----TSGPTASSPSPVVSTPPAGGPMASSPSPVVSTPPA- 734
Query: 221 GDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAP-PGARFDPIGPPGVPGFEP 279
GG M P+ G GGP G P AP PG GP G P
Sbjct: 735 -----GGPMASSPSPA---GGPPALSPAGGPSTAAGGPPAPGPGGAATSPGPGGAGASGP 890
Query: 280 NRFARNPRRPG 290
A P PG
Sbjct: 891 GGAAAAPGSPG 923
Score = 39.7 bits (91), Expect = 0.001
Identities = 36/114 (31%), Positives = 41/114 (35%), Gaps = 4/114 (3%)
Frame = +3
Query: 164 SSKTSDSTRPETSEPVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAG---MYPSR 220
S T+ S P S P G GP P +V PAG P P G + P+
Sbjct: 633 SGPTASSPSPVVSTPPAG-----GPMASSPSPVVSTPPAGGPMASSPSPAGGPPALSPAG 797
Query: 221 GDHDF-GGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPG 273
G GG GP S G GG GPG PG+P P G G
Sbjct: 798 GPSTAAGGPPAPGPGGAAT-SPGPGGAGASGPGGAAAAPGSPGSNSTAPSGNSG 956
Score = 30.8 bits (68), Expect = 0.69
Identities = 35/122 (28%), Positives = 42/122 (33%)
Frame = -1
Query: 151 KLDGTAHASSSTKSSKTSDSTRPETSEPVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFP 210
K +G + + D P + PG PA P PG + P P
Sbjct: 979 KFEGATNEPLLPDGAVELDPGDPGAAAAPPGPDAPAPPG---PGEVAAP----------P 839
Query: 211 GPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIG 270
GPGAG P+ D G GP G G G P GG+ G D IG
Sbjct: 838 GPGAGGPPAAVDGPPAGERAGGP------PAGEGDEAIGPPA--GGV--LTTGEGDDAIG 689
Query: 271 PP 272
PP
Sbjct: 688 PP 683
>BQ144022 homologue to GP|22831315|dbj hypothetical protein~predicted by
GlimmerM etc. {Oryza sativa (japonica cultivar-group)},
partial (16%)
Length = 1286
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/108 (33%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Frame = +2
Query: 156 AHASSSTKSSKTSDSTRPET---------SEPVPGFGEPAGPNDYHPGFIVPPVPAGS-- 204
A SS+TK+ + D RPE + P P E N P I PA +
Sbjct: 209 AQPSSATKTDRRPDDARPEARPHPRGQTRNRPDPEPNESHRTNSRTPETIPRHSPAQTQP 388
Query: 205 GSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPG 252
GSDL YPS G + GP P GG GGG G G G
Sbjct: 389 GSDL-SRQETNQYPSTKPKKADGGGVAGPK*PTAGEGGGGGGGGEGEG 529
>TC77828 similar to GP|16648867|gb|AAL24285.1 HSP associated protein like
{Arabidopsis thaliana}, partial (83%)
Length = 1587
Score = 37.7 bits (86), Expect = 0.006
Identities = 39/113 (34%), Positives = 44/113 (38%), Gaps = 2/113 (1%)
Frame = +3
Query: 163 KSSKTSDSTRPETSEPVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPG--PGAGMYPSR 220
K+ K S+ +PG G P G PG + P G PG PGAG P
Sbjct: 909 KAKKQEQSSSSRNPGGMPG-GFPGGMPGGFPGGMPGGFPGAGG---MPGGFPGAGGMP-- 1070
Query: 221 GDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPG 273
GG G GG GG PG GG+PG PGA P G PG
Sbjct: 1071-----GGFP------------GAGGMPGGFPG-AGGMPGGFPGAGGMPGGVPG 1175
Score = 36.6 bits (83), Expect = 0.013
Identities = 30/76 (39%), Positives = 32/76 (41%), Gaps = 3/76 (3%)
Frame = +3
Query: 204 SGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGG---TGGGIGGGPGFIGGLPGA 260
S S PG G +P F G M G GG GG GG PG GG+PG
Sbjct: 930 SSSSRNPGGMPGGFPGGMPGGFPGGMPGGFPGAGGMPGGFPGAGGMPGGFPG-AGGMPGG 1106
Query: 261 PPGARFDPIGPPGVPG 276
PGA P G PG G
Sbjct: 1107 FPGAGGMPGGFPGAGG 1154
Score = 35.0 bits (79), Expect = 0.037
Identities = 23/55 (41%), Positives = 25/55 (44%)
Frame = +3
Query: 236 PRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPRRPG 290
P GG GG+ GG GG+PG PGA P G PG G P F PG
Sbjct: 972 PGGMPGGFPGGMPGGFPGAGGMPGGFPGAGGMPGGFPGAGGM-PGGFPGAGGMPG 1133
Score = 33.5 bits (75), Expect = 0.11
Identities = 32/95 (33%), Positives = 34/95 (35%), Gaps = 3/95 (3%)
Frame = -3
Query: 209 FPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDP 268
FPG GM P+ G M P P G G P PG PPG P
Sbjct: 1177 FPGTPPGMPPAPGKPP---GMPPAPGKPPGMPPAPGNPPGMPPA-----PGNPPGMPPAP 1022
Query: 269 IGPPGV-PGFEPNRFARNP--RRPGFDAHPDLQHF 300
PPG+ PG P NP PGF D F
Sbjct: 1021 GNPPGMPPGNPPGMPPGNPPGMPPGFLLEDDCSCF 917
>TC80031 similar to GP|21327989|dbj|BAC00578. contains ESTs AU093876(E1018)
AU093877(E1018)~unknown protein, partial (8%)
Length = 902
Score = 36.2 bits (82), Expect = 0.016
Identities = 41/136 (30%), Positives = 50/136 (36%), Gaps = 8/136 (5%)
Frame = +2
Query: 162 TKSSKTSDSTRPETSEPVPG---FGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYP 218
++S R P+PG +G GP+ G G + PG G
Sbjct: 98 SRSGSVPPVNRDPYGNPMPGPDGYGPRRGPSQERM--------RGRGGAMAPGGFRGRGG 253
Query: 219 SRGDHDFGGSMLVGPNDPRWFSGGTG-GGIGGGPGFIGGLPGAPPGARFDPI----GPPG 273
G GG GP R G G GG G PG GG G PP + P G P
Sbjct: 254 GPGHGGRGGYNNYGPTPGRGGYGPQGRGGYGTPPGGRGGY-GPPPRGGYGPNGMRGGRPP 430
Query: 274 VPGFEPNRFARNPRRP 289
PG++ N A RRP
Sbjct: 431 PPGYQ-NGPAPYDRRP 475
>TC81272 similar to PIR|T05225|T05225 extensin homolog F17I5.160 -
Arabidopsis thaliana, partial (3%)
Length = 757
Score = 36.2 bits (82), Expect = 0.016
Identities = 34/108 (31%), Positives = 40/108 (36%), Gaps = 1/108 (0%)
Frame = +3
Query: 184 EPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGT 243
+P P P + P+P G G PGPGA P G G+ GP G
Sbjct: 75 KPQPPVTVGPVPLPTPIPTGPGGVPQPGPGASGAPQPGP-GASGAPQPGP--------GA 227
Query: 244 GGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGF-EPNRFARNPRRPG 290
G GPG G P PGA P P G +P A +PG
Sbjct: 228 SGAPQPGPG-ASGAPQPGPGASGAPQPGPDASGAPQPGPGASGAPQPG 368
Score = 27.3 bits (59), Expect = 7.6
Identities = 15/35 (42%), Positives = 16/35 (44%)
Frame = -1
Query: 178 PVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGP 212
P PG G P P PG+ PP P G G GP
Sbjct: 193 PGPG*GAPLAPG---PGWGTPPGPVGIGVGRGTGP 98
>AL372750 weakly similar to PIR|S14981|S149 extensin class I (clone w1-8 L) -
tomato (fragment), partial (24%)
Length = 306
Score = 35.4 bits (80), Expect = 0.028
Identities = 38/111 (34%), Positives = 42/111 (37%), Gaps = 22/111 (19%)
Frame = +1
Query: 185 PAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDF-----GGSMLVGPND---- 235
P G +P PP G G F G G SRG F GG L G
Sbjct: 4 PGGGGGKNP----PPQKKGGGGPFFKGGGRF---SRGGFFFFLGRGGGPPLWGEKKKGVF 162
Query: 236 -------PRWFSGGT----GGGIGGGPGFIGGLPGAPPGARFDPI--GPPG 273
PR GG GGG+GGG F GG G G +F + GPPG
Sbjct: 163 FPPPVFPPRGGGGGAFPPPGGGLGGGKTFFGGPKG---GGKFFCVGCGPPG 306
>TC81144 similar to PIR|T04462|T04462 hypothetical protein F4D11.160 -
Arabidopsis thaliana, partial (13%)
Length = 1102
Score = 35.4 bits (80), Expect = 0.028
Identities = 31/102 (30%), Positives = 36/102 (34%), Gaps = 11/102 (10%)
Frame = +1
Query: 210 PGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPI 269
P PGA + P G GG GP G G G P G P PPG+ P+
Sbjct: 25 PPPGALVRPGGGPPS-GGPPNAGP------PGRPTGPPPGQPSPFGSRPTGPPGSFAAPV 183
Query: 270 GPPGVP-----------GFEPNRFARNPRRPGFDAHPDLQHF 300
GVP G P F P + F+A P F
Sbjct: 184 SGVGVPPPGGSPPLRPSGPPPQNFGARPSQSPFNAPPSQSPF 309
Score = 32.0 bits (71), Expect = 0.31
Identities = 29/75 (38%), Positives = 33/75 (43%), Gaps = 2/75 (2%)
Frame = -3
Query: 201 PAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLP-- 258
P G G+ P GA P GG + + PN GG G+ GGP F GG P
Sbjct: 212 PPGGGTPT-PETGAAKEP-------GGPVGLDPNG-EG*PGGGPVGLPGGPAF-GGPPEG 63
Query: 259 GAPPGARFDPIGPPG 273
G PPG P G PG
Sbjct: 62 GPPPGLTNAPGGGPG 18
>NP212732 NP212732|AF106929.1|AAD39890.1 putative cell wall protein
Length = 576
Score = 35.0 bits (79), Expect = 0.037
Identities = 24/79 (30%), Positives = 29/79 (36%)
Frame = -2
Query: 196 IVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIG 255
++P PAG+ P PG G F+G GGGP G
Sbjct: 482 VLPDAPAGATDVPVPAPGVGAAAPP------------------FAGDGAAPSGGGPPGAG 357
Query: 256 GLPGAPPGARFDPIGPPGV 274
+PGA PGA G GV
Sbjct: 356 AVPGAAPGAAPGAAGAGGV 300
Score = 34.3 bits (77), Expect = 0.062
Identities = 33/118 (27%), Positives = 38/118 (31%)
Frame = +1
Query: 173 PETSEPVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVG 232
P +EP PG P G P A G D P G D G
Sbjct: 106 PPPAEPAPGAPPPPPKGKDAKGKDTPDGDAAKGKDAAPDGAKGK-------DAAPDGAKG 264
Query: 233 PNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRFARNPRRPG 290
+ P+ G G P G PGA PG P GPP P A +P + G
Sbjct: 265 KDAPK--EGAKGTVTPPAPAAPGAAPGAAPGTAPAPGGPP------PEGAAPSPAKGG 414
Score = 31.2 bits (69), Expect = 0.53
Identities = 28/101 (27%), Positives = 37/101 (35%), Gaps = 2/101 (1%)
Frame = -2
Query: 173 PETSEPVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGP-GAGMYPSRGDHDFGGSMLV 231
P + VPG A P G + P+ G+ P GA +P +
Sbjct: 371 PPGAGAVPGAAPGAAPGAAGAGGVTVPLAPSLGASFPLAPSGAASFPLAPSGAASFPLAA 192
Query: 232 GPNDPRW-FSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGP 271
P+ + + GG GG PG G G PGA P GP
Sbjct: 191 SPSGVSFPLASFPFGGGGGAPG-AGSAGGGVPGAGGAPTGP 72
>TC86690 similar to GP|6041851|gb|AAF02160.1| unknown protein {Arabidopsis
thaliana}, partial (63%)
Length = 1592
Score = 35.0 bits (79), Expect = 0.037
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = +3
Query: 211 GPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIG 270
G G+G+Y S G + GG ++ G GG +GG G+ G+ P G DP
Sbjct: 624 GYGSGLYGSSGMYGGGG----------MYNSGLGGPMGGMGGY--GMGVGPYGGEQDPNN 767
Query: 271 PPGVPGFEP 279
P G P P
Sbjct: 768 PYGAPPSPP 794
Score = 31.6 bits (70), Expect = 0.41
Identities = 20/56 (35%), Positives = 31/56 (54%), Gaps = 1/56 (1%)
Frame = +3
Query: 205 GSDLFPGPGAGMYPSRGDHDFG-GSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPG 259
G++ + G G Y S +++ G GS + G + + GG GGG+GGG GG+ G
Sbjct: 450 GTNSYGGGALGGYGSTMNYNSGYGSGMYGSS----YGGGLGGGLGGGMYGGGGMYG 605
>TC76346 similar to GP|16649017|gb|AAL24360.1 epsin-like protein {Arabidopsis
thaliana}, partial (11%)
Length = 1617
Score = 34.3 bits (77), Expect = 0.062
Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Frame = +1
Query: 202 AGSGSDLFPGP----GAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGL 257
AG+G+ L P P G+GM G + G M +G GG GGG+ G G+
Sbjct: 913 AGAGA-LRPNPNSMMGSGMGMGMGMGNAPGGMGMGNAPGGMGMGGYGGGMNPSMGMGMGM 1089
Query: 258 PGAPPGARFDPIGPPGVP--GFEPNRFARNPRRPGFDAHPDLQHFRRD 303
G G + P G+P P + N RPG A +R D
Sbjct: 1090 GGMGMGQGYQMQPPNGMPPGSNMPGNYNNNMMRPGGYAQQPYGGYR*D 1233
>BQ135858 similar to GP|23491723|db formin homology protein A {Dictyostelium
discoideum}, partial (4%)
Length = 1033
Score = 33.9 bits (76), Expect = 0.082
Identities = 31/85 (36%), Positives = 35/85 (40%), Gaps = 7/85 (8%)
Frame = +1
Query: 195 FIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGI-----GG 249
F+ PP P P PG G P G GG+ +F GG GGG+ GG
Sbjct: 328 FLGPPPPPQKKKTPPPPPGGGGNPIGGGGG-GGNF--------FFGGGGGGGVPPPPRGG 480
Query: 250 GPGFIGGLPGAPP--GARFDPIGPP 272
G G G P PP GA F PP
Sbjct: 481 GGG--GDPPPPPPAGGAPFFFFNPP 549
Score = 31.6 bits (70), Expect = 0.41
Identities = 27/72 (37%), Positives = 31/72 (42%), Gaps = 4/72 (5%)
Frame = +3
Query: 195 FIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGG----IGGG 250
F PP P + P P G P RG GG G + ++ GG GGG GGG
Sbjct: 327 FFGPPPPPTKKKNTPPPPRGGGKPHRG----GG----GGGEFFFWGGGGGGGPPPPPGGG 482
Query: 251 PGFIGGLPGAPP 262
G GG P PP
Sbjct: 483 GG--GGPPPPPP 512
Score = 28.5 bits (62), Expect = 3.4
Identities = 29/84 (34%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Frame = +2
Query: 195 FIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGI---GGGP 251
F PP P P PG G PS GG GGGI GGG
Sbjct: 329 FWAPPPPHKKKKHPPPPPGGGETPS--------------------GGGGGGGIFFLGGGG 448
Query: 252 GFIGGLPGAPPGARFDPIGPPGVP 275
G GG P PPG PP P
Sbjct: 449 G--GGSP-PPPGGGGGGGTPPPPP 511
>BQ135612 similar to GP|15028978|emb type II keratin E2 {Oncorhynchus
mykiss}, partial (8%)
Length = 938
Score = 33.9 bits (76), Expect = 0.082
Identities = 31/95 (32%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Frame = +3
Query: 193 PGFIVPPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPR----------W--FS 240
P F PP P + P PG G P GG GP PR W F
Sbjct: 132 PPFFFPPPPPPQKKNPPPPPGGGSPPP----PLGG--FGGPGVPRPFL*KKNLKVWGEFP 293
Query: 241 GGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVP 275
GG +G G F GG PG GPP +P
Sbjct: 294 PPPGGPLGQGENFSGGPPGK---------GPPFIP 371
Score = 32.3 bits (72), Expect = 0.24
Identities = 28/89 (31%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Frame = -1
Query: 183 GEPAGPNDYHPGFIV---PPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWF 239
G P G + P F V P G P G G RG GG + +F
Sbjct: 311 GPPGGGGKFPPNFKVFFLKERPGDPGPPKTPQGGGGRSSPRG----GGGV--------FF 168
Query: 240 SGGTGGGIGGGPGFIGGLPGAPPGARFDP 268
GG GGG G GF P PP + P
Sbjct: 167 LGGGGGGKKKGGGFFFFFPPPPPPKKGGP 81
Score = 31.2 bits (69), Expect = 0.53
Identities = 22/72 (30%), Positives = 25/72 (34%)
Frame = -2
Query: 198 PPVPAGSGSDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGL 257
P P G G D PG G G + F GG GGG G GF
Sbjct: 229 PKPPKGGGGDPPPGGGGGFF---------------------FWGGGGGGKKKGGGFFFFS 113
Query: 258 PGAPPGARFDPI 269
P PP + P+
Sbjct: 112 PPPPPQKKGGPL 77
Score = 27.7 bits (60), Expect = 5.8
Identities = 26/79 (32%), Positives = 29/79 (35%), Gaps = 1/79 (1%)
Frame = -3
Query: 185 PAGPNDYHPGFIVPPVPAGSG-SDLFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGT 243
P GP G +PP G GP A P RG GG +L +F GG
Sbjct: 324 PLGPRAPRGGGEIPPKL*GFFFKGKAGGPRAPQNPPRG----GGEILPPGGGGGFFFGGG 157
Query: 244 GGGIGGGPGFIGGLPGAPP 262
GGG G P PP
Sbjct: 156 GGGEKKRGGVFFFFPPPPP 100
>TC93358 weakly similar to GP|7303636|gb|AAF58688.1| CG13214-PA {Drosophila
melanogaster}, partial (7%)
Length = 611
Score = 33.9 bits (76), Expect = 0.082
Identities = 30/83 (36%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Frame = +3
Query: 181 GFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGD-------HDFG-GSMLVG 232
GFG + P P F+ PP G G + G G G P G+ +D G G G
Sbjct: 375 GFG--SAPVTPIPHFLPPP--GGGGFSIGRGGGGGFGPRFGNGHASDRKYDSGRGGRGGG 542
Query: 233 PNDPRWFSGGTGGGIGGGPGFIG 255
+ FSGG G G GGG G G
Sbjct: 543 RGGAQGFSGGRGRGGGGGRGGSG 611
>TC82136 similar to GP|22202729|dbj|BAC07386. putative snRNP protein {Oryza
sativa (japonica cultivar-group)}, partial (51%)
Length = 629
Score = 33.9 bits (76), Expect = 0.082
Identities = 23/64 (35%), Positives = 25/64 (38%), Gaps = 17/64 (26%)
Frame = -2
Query: 244 GGGIGGGPGFIGGLPGAP-----PGARFDPIGPPG------------VPGFEPNRFARNP 286
G GGGP +GG PG P PG GPPG +PG P P
Sbjct: 595 GANCGGGPPGLGGPPGIPGYGI*PGGGRITGGPPGYETGGREICGCIIPGAGPPTPRTGP 416
Query: 287 RRPG 290
RPG
Sbjct: 415 ARPG 404
>BQ144499 similar to GP|20378854|gb| similar to quaking II {Mus musculus},
partial (11%)
Length = 1317
Score = 33.1 bits (74), Expect = 0.14
Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 232 GPNDPRWFSGGTGGGIGGG-PGFIGGLPGAPPGARFDPIGPPGVPGFEP 279
GP+ PR GG GGG G P F+G GA GAR G PG P
Sbjct: 152 GPDPPRSRRGGVGGGRGAR*PPFVGEP*GA-GGARVGRAAGAGAPGTAP 295
>BQ151174 similar to GP|11036868|gb| PxORF73 peptide {Plutella xylostella
granulovirus}, partial (42%)
Length = 909
Score = 33.1 bits (74), Expect = 0.14
Identities = 43/156 (27%), Positives = 50/156 (31%), Gaps = 21/156 (13%)
Frame = +2
Query: 155 TAHASSSTKSSKTSDSTRPETSEPVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGA 214
+AH + RP P P G G P PP A G P PG+
Sbjct: 302 SAHGPRNHPGDAPHRRRRPNKPGPPPRRG--GGQGGRAPAPPPPPPKAREGRTPKPDPGS 475
Query: 215 GMYPSRGDHDFGGSM------LVGPNDPRWFSGGTGGGIGGGP-----GFIGGLPGAPP- 262
+R G + P P+ T GGGP G GG PG PP
Sbjct: 476 KENHNRTPGKEGPATHGPPEKKTPPPTPKRRGKHTKRAPGGGPPPPHPGRGGGGPGGPPP 655
Query: 263 ---------GARFDPIGPPGVPGFEPNRFARNPRRP 289
G R P G PG +NPRRP
Sbjct: 656 PPPKKNSERGGRAAPRGRPGTK-------RKNPRRP 742
Score = 29.3 bits (64), Expect = 2.0
Identities = 22/58 (37%), Positives = 24/58 (40%), Gaps = 2/58 (3%)
Frame = -1
Query: 208 LFPGPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLP--GAPPG 263
L PG G G+ PSR GG P P +GGGPG G GA PG
Sbjct: 477 LLPGSGFGVLPSRALGGGGGGAGARPPCPPPL-------LGGGPGLFGRRRRWGASPG 325
Score = 27.3 bits (59), Expect = 7.6
Identities = 36/132 (27%), Positives = 41/132 (30%)
Frame = +2
Query: 163 KSSKTSDSTRPETSEPVPGFGEPAGPNDYHPGFIVPPVPAGSGSDLFPGPGAGMYPSRGD 222
K KT+ P T P P P P HP P + G PG P R
Sbjct: 200 KPQKTTHPHHPHTPPPTP---HPPNPPPNHPNH--PTTRSAHGPRNHPGDA----PHRRR 352
Query: 223 HDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPGAPPGARFDPIGPPGVPGFEPNRF 282
PN P G GGG G P PP + P PG + N
Sbjct: 353 R---------PNKP-----GPPPRRGGGQGGRAPAPPPPPPKAREGRTPKPDPGSKENH- 487
Query: 283 ARNPRRPGFDAH 294
R P + G H
Sbjct: 488 NRTPGKEGPATH 523
>TC88828 weakly similar to GP|15809950|gb|AAL06902.1 AT4g22740/T12H17_130
{Arabidopsis thaliana}, partial (18%)
Length = 718
Score = 33.1 bits (74), Expect = 0.14
Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 30/96 (31%)
Frame = +3
Query: 232 GPNDPRWFSGGTGGGIGG----GP------GFIGG--------------------LPGAP 261
G DP FSGG GG GG GP F GG + G P
Sbjct: 228 GGRDP--FSGGPFGGFGGFGPFGPPGNLMSSFFGGRDPFDDPFFTQPFGGMFQSSIMGGP 401
Query: 262 PGARFDPIGPPGVPGFEPNRFARNPRRPGFDAHPDL 297
G F P PGF+ + N + PGF HPD+
Sbjct: 402 SGFPFPP--EMHRPGFDLGQNMPNMQLPGFPFHPDM 503
>TC84888 similar to GP|21322752|dbj|BAB78536. cold shock protein-1 {Triticum
aestivum}, partial (58%)
Length = 612
Score = 32.0 bits (71), Expect = 0.31
Identities = 20/49 (40%), Positives = 22/49 (44%)
Frame = +2
Query: 211 GPGAGMYPSRGDHDFGGSMLVGPNDPRWFSGGTGGGIGGGPGFIGGLPG 259
G G G Y D +GG G + F GG GGG GGG GG G
Sbjct: 317 GRGGGGYGGGYDQGYGGG---GGSYGGGFGGGRGGGRGGGGYXQGGYGG 454
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.138 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,896,142
Number of Sequences: 36976
Number of extensions: 141532
Number of successful extensions: 2087
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of query: 309
length of database: 9,014,727
effective HSP length: 96
effective length of query: 213
effective length of database: 5,465,031
effective search space: 1164051603
effective search space used: 1164051603
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Medicago: description of AC142224.1