Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC142222.6 - phase: 0 
         (123 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC84472 similar to GP|7770334|gb|AAF69704.1| F27J15.21 {Arabidop...   244  5e-66
TC90128 similar to GP|7770334|gb|AAF69704.1| F27J15.21 {Arabidop...   145  4e-36
BQ165547 similar to GP|7770334|gb|A F27J15.21 {Arabidopsis thali...   142  3e-35
TC82378 weakly similar to GP|7770334|gb|AAF69704.1| F27J15.21 {A...   102  3e-23
BG588604 similar to PIR|G96739|G967 F14O23.12 [imported] - Arabi...    48  1e-06
TC86768 similar to GP|15294244|gb|AAK95299.1 At2g46600/F13A10.13...    28  0.68
TC88913 homologue to PIR|S55945|S55945 zinc proteinase (EC 3.4.2...    26  4.4
TC87263 similar to GP|9759298|dbj|BAB09804.1 emb|CAB82953.1~gene...    26  4.4
TC85013 similar to PIR|T50562|T50562 SINA2 protein [imported] - ...    26  4.4
AW560513                                                               25  5.7
TC89959 similar to GP|15795137|dbj|BAB02515. transporter-like pr...    25  5.7
TC80359 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycop...    25  5.7
TC78559 weakly similar to GP|5733686|gb|AAD49719.1| maturation p...    25  5.7
TC86534 homologue to SP|P12227|RPOD_PEA DNA-directed RNA polymer...    25  7.5
TC91969 similar to GP|9758643|dbj|BAB09267.1 fimbrin {Arabidopsi...    25  9.8
AW695056                                                               25  9.8
TC80764 similar to GP|12039376|gb|AAG46162.1 hypothetical protei...    25  9.8

>TC84472 similar to GP|7770334|gb|AAF69704.1| F27J15.21 {Arabidopsis
           thaliana}, partial (25%)
          Length = 751

 Score =  244 bits (624), Expect = 5e-66
 Identities = 123/123 (100%), Positives = 123/123 (100%)
 Frame = +1

Query: 1   MANLTSSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQF 60
           MANLTSSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQF
Sbjct: 67  MANLTSSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQF 246

Query: 61  GKMKKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAIPF 120
           GKMKKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAIPF
Sbjct: 247 GKMKKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAIPF 426

Query: 121 SRY 123
           SRY
Sbjct: 427 SRY 435


>TC90128 similar to GP|7770334|gb|AAF69704.1| F27J15.21 {Arabidopsis
           thaliana}, partial (32%)
          Length = 716

 Score =  145 bits (366), Expect = 4e-36
 Identities = 85/147 (57%), Positives = 100/147 (67%), Gaps = 29/147 (19%)
 Frame = +3

Query: 6   SSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKT-------------------- 45
           +SPES + +  SN  FF+TISAILA+LSR+A RLK KAK+                    
Sbjct: 57  TSPESPN-RHHSNGGFFVTISAILALLSRKANRLKEKAKSSSTTKPIRDEEWRFDLKTPP 233

Query: 46  -------KKLLSNMSNKALSQFGKMKKTKKQRDNEL--NDGVWQKEILMGGKCEPLDFSG 96
                  KKLLSN+SNKALSQFGK KK +++R+ E   N GVWQKEILMGGKCEPLDFSG
Sbjct: 234 KSPMAKPKKLLSNISNKALSQFGK-KKQREEREKEGWGNGGVWQKEILMGGKCEPLDFSG 410

Query: 97  VIHYDINGRQTGEVPLRSPRAIPFSRY 123
           VI+YDING+QT EVP+RSPRA P   Y
Sbjct: 411 VIYYDINGKQTREVPIRSPRASPLPGY 491


>BQ165547 similar to GP|7770334|gb|A F27J15.21 {Arabidopsis thaliana},
           partial (32%)
          Length = 649

 Score =  142 bits (358), Expect = 3e-35
 Identities = 81/139 (58%), Positives = 94/139 (67%), Gaps = 29/139 (20%)
 Frame = -1

Query: 14  KRQSNSSFFITISAILAMLSRQARRLKGKAKT---------------------------K 46
           +  SN  FF+TISAILA+LSR+A RLK KAK+                           K
Sbjct: 646 RHHSNGGFFVTISAILALLSRKASRLKEKAKSSSTTKPIRDEEWRFDLKTPPKSPMAKPK 467

Query: 47  KLLSNMSNKALSQFGKMKKTKKQRDNEL--NDGVWQKEILMGGKCEPLDFSGVIHYDING 104
           KLLSN+SNKALSQFGK KK +++R+ E   N GVWQKEILMGGKCEPLDFSGVI+YDING
Sbjct: 466 KLLSNISNKALSQFGK-KKQREEREKEGWGNGGVWQKEILMGGKCEPLDFSGVIYYDING 290

Query: 105 RQTGEVPLRSPRAIPFSRY 123
           +QT EVP+RSPRA P   Y
Sbjct: 289 KQTREVPIRSPRASPLPGY 233


>TC82378 weakly similar to GP|7770334|gb|AAF69704.1| F27J15.21 {Arabidopsis
           thaliana}, partial (37%)
          Length = 568

 Score =  102 bits (255), Expect = 3e-23
 Identities = 57/114 (50%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
 Frame = +2

Query: 12  SPKRQSNSSFFITISAILAMLSRQARRLKGKAKT------KKLLSNMSNKALSQFGKMKK 65
           S KR++N       + +  M+ R   +LK    T      KKLL N+SNKA+    KMKK
Sbjct: 26  SSKRRANRFIINVTTLMTVMVKRATLKLKAAPMTSEVKSPKKLLKNISNKAMPFIEKMKK 205

Query: 66  TKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAIP 119
            KK +    + GVWQK ILMG KCEPLDFSGVI+YD  G+Q  E PLRSPRA P
Sbjct: 206 KKKGKLEWGDGGVWQKTILMGDKCEPLDFSGVIYYDNKGKQVNEFPLRSPRATP 367


>BG588604 similar to PIR|G96739|G967 F14O23.12 [imported] - Arabidopsis
           thaliana, partial (32%)
          Length = 568

 Score = 47.8 bits (112), Expect = 1e-06
 Identities = 23/42 (54%), Positives = 29/42 (68%)
 Frame = +3

Query: 63  MKKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDING 104
           M   ++QR+    D +WQK ILMGGKC+  DFSGVI YD +G
Sbjct: 156 MNGCEQQREE---DSIWQKNILMGGKCQLPDFSGVIIYDSDG 272


>TC86768 similar to GP|15294244|gb|AAK95299.1 At2g46600/F13A10.13
           {Arabidopsis thaliana}, partial (85%)
          Length = 651

 Score = 28.5 bits (62), Expect = 0.68
 Identities = 16/54 (29%), Positives = 27/54 (49%)
 Frame = -1

Query: 4   LTSSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKAL 57
           + S+   L P   S + FF+ +S ++  +S  ARRLK    +   +S  S  A+
Sbjct: 351 IASASSLLIPSMPSMAEFFLRLSLVIKPVSWSARRLKPPHSSDTKVSTSSFSAI 190


>TC88913 homologue to PIR|S55945|S55945 zinc proteinase (EC 3.4.24.-) STE23 -
            yeast (Saccharomyces cerevisiae), partial (1%)
          Length = 1735

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 51   NMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGGKCE 90
            ++ NK  SQ      T K+  + +N   W++   +GG CE
Sbjct: 1040 SLKNKCQSQ------TSKEG*SSINSQAWRRRKFLGGHCE 939


>TC87263 similar to GP|9759298|dbj|BAB09804.1
            emb|CAB82953.1~gene_id:MPH15.5~strong similarity to
            unknown protein {Arabidopsis thaliana}, partial (65%)
          Length = 2229

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 13/32 (40%), Positives = 20/32 (61%)
 Frame = +3

Query: 23   ITISAILAMLSRQARRLKGKAKTKKLLSNMSN 54
            I++S+ILA      + LKG+  TKK+  +M N
Sbjct: 1317 ISLSSILATGGLMIKLLKGRTITKKVAMSMMN 1412


>TC85013 similar to PIR|T50562|T50562 SINA2 protein [imported] - Vitis
           vinifera, partial (25%)
          Length = 666

 Score = 25.8 bits (55), Expect = 4.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 62  KMKKTKKQRDNELNDGVWQKEILMGGKCEPLDF 94
           K+KK +++  + + +G W++      +  PLDF
Sbjct: 255 KLKKLERKPLDRIRNGSWRRYFQRSSRVSPLDF 353


>AW560513 
          Length = 416

 Score = 25.4 bits (54), Expect = 5.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 63  MKKTKKQRDNELNDGVWQKEILMG 86
           +KKTK  ++ + NDGV  K++L G
Sbjct: 384 IKKTKLSKEEKQNDGVKLKKVL*G 313


>TC89959 similar to GP|15795137|dbj|BAB02515. transporter-like protein
           {Arabidopsis thaliana}, partial (87%)
          Length = 1681

 Score = 25.4 bits (54), Expect = 5.7
 Identities = 18/59 (30%), Positives = 28/59 (46%), Gaps = 1/59 (1%)
 Frame = -2

Query: 11  LSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSN-MSNKALSQFGKMKKTKK 68
           LSPKRQ    F+++   IL  L    +  +GK    K++   +SN  L+   K    +K
Sbjct: 783 LSPKRQLLQLFYLSSIGILVTLVSFCKTEEGKMWEGKIVQEAISNPVLASQSKQVMLQK 607


>TC80359 GP|1435157|emb|CAA58445.1 histone H3 variant H3.3 {Lycopersicon
          esculentum}, complete
          Length = 1440

 Score = 25.4 bits (54), Expect = 5.7
 Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
 Frame = +2

Query: 19 SSFFITISAILAMLSRQARRLKG-KAKTKKLLSNMSNKALSQFGKMKKTKKQR 70
          SS F   S  +A   + AR+  G KA  K+L +  + K+    G +KK  + R
Sbjct: 23 SSSFFRFSNSMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYR 181


>TC78559 weakly similar to GP|5733686|gb|AAD49719.1| maturation protein
           pPM32 {Glycine max}, partial (55%)
          Length = 1128

 Score = 25.4 bits (54), Expect = 5.7
 Identities = 12/29 (41%), Positives = 18/29 (61%)
 Frame = -1

Query: 5   TSSPESLSPKRQSNSSFFITISAILAMLS 33
           T++PE   P+  S+SSF  T+S I  + S
Sbjct: 837 TTTPEPPLPRSSSSSSFPTTVSLIFCVAS 751


>TC86534 homologue to SP|P12227|RPOD_PEA DNA-directed RNA polymerase beta'
            chain (EC 2.7.7.6) (Fragment). [Garden pea] {Pisum
            sativum}, partial (61%)
          Length = 2441

 Score = 25.0 bits (53), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (65%)
 Frame = -1

Query: 80   QKEILMGGKCEPLDFSGVIHY 100
            Q +IL  G C+PLD   +I++
Sbjct: 1988 QNKILFLGSCDPLDIDPIINF 1926


>TC91969 similar to GP|9758643|dbj|BAB09267.1 fimbrin {Arabidopsis
           thaliana}, partial (36%)
          Length = 781

 Score = 24.6 bits (52), Expect = 9.8
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -3

Query: 3   NLTSSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNK 55
           +++S+ E+++P   S +SFF     I++    +   ++   K   +L N+SNK
Sbjct: 635 DISSNSETVNP--DSEASFFPRCLCIISHHLSEGHFIRVNCKPIPMLENLSNK 483


>AW695056 
          Length = 515

 Score = 24.6 bits (52), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 50  SNMSNKALSQFGKMKKTKKQRDNELNDGVW 79
           SN++ ++L+Q  K      +R   LND VW
Sbjct: 170 SNLAKRSLNQNAKRHMQTHKRCPSLNDQVW 81


>TC80764 similar to GP|12039376|gb|AAG46162.1 hypothetical protein {Oryza
           sativa}, partial (25%)
          Length = 928

 Score = 24.6 bits (52), Expect = 9.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 5   TSSPESLSPKRQSNSSFFIT 24
           TSSPESL+P+  S+S   ++
Sbjct: 110 TSSPESLAPEAHSSSHLLLS 169


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.315    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,010,702
Number of Sequences: 36976
Number of extensions: 30598
Number of successful extensions: 207
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of query: 123
length of database: 9,014,727
effective HSP length: 84
effective length of query: 39
effective length of database: 5,908,743
effective search space: 230440977
effective search space used: 230440977
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)


Medicago: description of AC142222.6