TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC142142.4 - phase: 0 
         (508 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC76497 homologue to SP|P06411|PSBB_TOBAC Photosystem II P680 ch...  1060  0.0
TC88596 homologue to GP|4581045|gb|AAD24583.1| chlorophyll a-bin...    41  0.001
TC80303 weakly similar to GP|20161135|dbj|BAB90063. hypothetical...    28  6.4
TC84955 similar to GP|9716226|emb|CAC01587.1 putative lipoprotei...    28  8.3
TC80897 similar to GP|3241854|dbj|BAA28872.1 thaumatin-like prot...    28  8.3

>TC76497 homologue to SP|P06411|PSBB_TOBAC Photosystem II P680 chlorophyll A
           apoprotein (CP-47 protein). [Common tobacco] {Nicotiana
           tabacum}, complete
          Length = 4045

 Score = 1060 bits (2742), Expect = 0.0
 Identities = 508/508 (100%), Positives = 508/508 (100%)
 Frame = +1

Query: 1   MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 60
           MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM
Sbjct: 145 MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGM 324

Query: 61  FVIPFMTRLGITNSWGGWNITGGTITNPGIWSYEGVAAAHIVFSGLCFLAAIWHWVYWDL 120
           FVIPFMTRLGITNSWGGWNITGGTITNPGIWSYEGVAAAHIVFSGLCFLAAIWHWVYWDL
Sbjct: 325 FVIPFMTRLGITNSWGGWNITGGTITNPGIWSYEGVAAAHIVFSGLCFLAAIWHWVYWDL 504

Query: 121 EIFCDERTGKPSLDLPKIFGIHLFLAGVACFGFGAFHVTGLFGPGIWVSDPYGLTGRVQS 180
           EIFCDERTGKPSLDLPKIFGIHLFLAGVACFGFGAFHVTGLFGPGIWVSDPYGLTGRVQS
Sbjct: 505 EIFCDERTGKPSLDLPKIFGIHLFLAGVACFGFGAFHVTGLFGPGIWVSDPYGLTGRVQS 684

Query: 181 VNPAWGVDGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS 240
           VNPAWGVDGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS
Sbjct: 685 VNPAWGVDGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS 864

Query: 241 SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVGAGLAENQSLSE 300
           SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVGAGLAENQSLSE
Sbjct: 865 SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVGAGLAENQSLSE 1044

Query: 301 AWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMP 360
           AWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMP
Sbjct: 1045AWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMP 1224

Query: 361 TFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVEFFGGELNGVSYSDPATVKKY 420
           TFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVEFFGGELNGVSYSDPATVKKY
Sbjct: 1225TFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVEFFGGELNGVSYSDPATVKKY 1404

Query: 421 ARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA 480
           ARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA
Sbjct: 1405ARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFA 1584

Query: 481 GIDPDLDAQVEFGAFQKLGDPTTKKQAV 508
           GIDPDLDAQVEFGAFQKLGDPTTKKQAV
Sbjct: 1585GIDPDLDAQVEFGAFQKLGDPTTKKQAV 1668


>TC88596 homologue to GP|4581045|gb|AAD24583.1| chlorophyll a-binding
           protein PsbC {Populus deltoides}, partial (37%)
          Length = 1650

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 21/73 (28%), Positives = 29/73 (38%)
 Frame = +3

Query: 419 KYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDV 478
           +Y   A LG +  +     + + V   SPR W    H       F GH+WH  R   R  
Sbjct: 294 EYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRA--RAA 467

Query: 479 FAGIDPDLDAQVE 491
            AG +  +D   E
Sbjct: 468 AAGFEKGIDRDSE 506


>TC80303 weakly similar to GP|20161135|dbj|BAB90063. hypothetical protein
           {Oryza sativa (japonica cultivar-group)}, partial (19%)
          Length = 789

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 143 LFLAGVACFGFGAFHVTGLFGPGIW 167
           LFL  V CF    F  TG+FG G W
Sbjct: 70  LFLLTVVCFILVLFRRTGMFGRGEW 144


>TC84955 similar to GP|9716226|emb|CAC01587.1 putative lipoprotein
           {Streptomyces coelicolor A3(2)}, partial (2%)
          Length = 650

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 14/37 (37%), Positives = 19/37 (50%)
 Frame = -2

Query: 133 LDLPKIFGIHLFLAGVACFGFGAFHVTGLFGPGIWVS 169
           LDL  + G     +GV     G FH+   FGPG++ S
Sbjct: 145 LDLA*LKGGAPLNSGVTLTSIGKFHLPSAFGPGLYTS 35


>TC80897 similar to GP|3241854|dbj|BAA28872.1 thaumatin-like protein
           precursor {Pyrus pyrifolia}, partial (60%)
          Length = 602

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
 Frame = -3

Query: 78  WNITGGTITNPGIWSY-----EGVAAAHIV--FSGLCFLAAIWHWVYWD 119
           W   G  +T P +W Y     E    AHIV   S +C     +   +WD
Sbjct: 189 WTTGGFAVTTPTLWRYRHWHVESTHIAHIVKILSPVCCYGYFYQCCWWD 43


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.325    0.143    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,699,083
Number of Sequences: 36976
Number of extensions: 254446
Number of successful extensions: 1343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of query: 508
length of database: 9,014,727
effective HSP length: 100
effective length of query: 408
effective length of database: 5,317,127
effective search space: 2169387816
effective search space used: 2169387816
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)