BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142142.2 + phase: 0
(119 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC76737 homologue to SP|P06379|RK2_TOBAC Chloroplast 50S ribosom... 241 4e-65
CA859891 weakly similar to PIR|S09286|R5EG ribosomal protein L16... 44 1e-05
TC83827 similar to GP|21592923|gb|AAM64873.1 induced upon woundi... 29 0.23
BQ751763 similar to GP|18894036|gb| hypothetical protein {Pyroco... 26 2.5
TC79326 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_9... 25 4.3
TC87539 similar to PIR|T06308|T06308 protein phosphatase 2C homo... 25 4.3
CB065283 similar to PIR|F83356|F83 hypothetical protein PA2310 [... 25 5.6
TC88771 similar to GP|3643603|gb|AAC42250.1| unknown protein {Ar... 25 5.6
TC79831 similar to GP|10177116|dbj|BAB10406. contains similarity... 24 7.3
BG583596 similar to GP|4325376|gb| T3H13.12 gene product {Arabid... 24 7.3
TC83159 24 9.6
TC81293 similar to GP|19911581|dbj|BAB86894. syringolide-induced... 24 9.6
TC85581 weakly similar to PIR|T14329|T14329 dermal glycoprotein ... 24 9.6
TC77791 similar to GP|10176862|dbj|BAB10068. emb|CAB80929.1~gene... 24 9.6
>TC76737 homologue to SP|P06379|RK2_TOBAC Chloroplast 50S ribosomal protein
L2. [Common tobacco] {Nicotiana tabacum}, partial (95%)
Length = 5466
Score = 241 bits (614), Expect = 4e-65
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +1
Query: 1 MKGKAYRGNTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGKIWVRIFPDKPVTV 60
MKGKAYRGNTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGKIWVRIFPDKPVTV
Sbjct: 4249 MKGKAYRGNTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGKIWVRIFPDKPVTV 4428
Query: 61 RPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIRTQFILSE 119
RPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIRTQFILSE
Sbjct: 4429 RPTETRMGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMPIRTQFILSE 4605
>CA859891 weakly similar to PIR|S09286|R5EG ribosomal protein L16 - Euglena
gracilis chloroplast, partial (33%)
Length = 407
Score = 43.5 bits (101), Expect = 1e-05
Identities = 23/44 (52%), Positives = 30/44 (67%)
Frame = +2
Query: 67 MGSGKGSPEYWVAVVKPGKILYEMGGVPENIARKAISIAASKMP 110
MGSGKGS E VAVVK I+YE+ GV +++A K + A K+P
Sbjct: 2 MGSGKGSIEE*VAVVKS*TIVYEIKGVSKSVAYKVLKKAGDKLP 133
>TC83827 similar to GP|21592923|gb|AAM64873.1 induced upon wounding stress
{Arabidopsis thaliana}, partial (38%)
Length = 633
Score = 29.3 bits (64), Expect = 0.23
Identities = 22/77 (28%), Positives = 35/77 (44%), Gaps = 8/77 (10%)
Frame = -2
Query: 11 ISFGKYALQALEPAWITSRQIEAGRRA------MSRNVRRGGKIWVRIFPDKPVT--VRP 62
+SFG + ++ Q GRRA + V G+I R+FP PVT + P
Sbjct: 452 VSFGSVMSHWMYSIG*SAFQEGRGRRATP*TFHLPPGVSARGRISARLFPTMPVTPMISP 273
Query: 63 TETRMGSGKGSPEYWVA 79
T ++G S +++A
Sbjct: 272 TLWKVGGASSSSNFFLA 222
>BQ751763 similar to GP|18894036|gb| hypothetical protein {Pyrococcus
furiosus DSM 3638}, partial (5%)
Length = 712
Score = 25.8 bits (55), Expect = 2.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 22 EPAWITSRQIEAGRRAMSRNVRRGGKIWVR 51
+P I+ GRR +R +RR G WVR
Sbjct: 386 KPCTISRYTTVLGRRLAARTIRRTGGRWVR 475
>TC79326 homologue to GP|14190381|gb|AAK55671.1 AT5g11200/F2I11_90
{Arabidopsis thaliana}, partial (94%)
Length = 1883
Score = 25.0 bits (53), Expect = 4.3
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -3
Query: 47 KIWVR---IFPDKPVTVRPTETRMGSGKGS 73
++W+ FPD P+T+ PTE+ S S
Sbjct: 237 ELWIPT*PFFPDSPLTLAPTESGAFSSSSS 148
>TC87539 similar to PIR|T06308|T06308 protein phosphatase 2C homolog
F11C18.60 - Arabidopsis thaliana, partial (92%)
Length = 1423
Score = 25.0 bits (53), Expect = 4.3
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -3
Query: 59 TVRPTETRMGSGKGSP 74
TVRPTE RMGS SP
Sbjct: 590 TVRPTEIRMGSLLKSP 543
>CB065283 similar to PIR|F83356|F83 hypothetical protein PA2310 [imported] -
Pseudomonas aeruginosa (strain PAO1), partial (37%)
Length = 537
Score = 24.6 bits (52), Expect = 5.6
Identities = 13/29 (44%), Positives = 17/29 (57%), Gaps = 1/29 (3%)
Frame = -3
Query: 25 WITSRQIEA-GRRAMSRNVRRGGKIWVRI 52
W+T Q E RRA RN R G +WV++
Sbjct: 127 WLTPTQCETFNRRATIRNAR-GFPVWVQV 44
>TC88771 similar to GP|3643603|gb|AAC42250.1| unknown protein {Arabidopsis
thaliana}, partial (33%)
Length = 1295
Score = 24.6 bits (52), Expect = 5.6
Identities = 10/28 (35%), Positives = 15/28 (52%)
Frame = +2
Query: 60 VRPTETRMGSGKGSPEYWVAVVKPGKIL 87
+ PT R G G+ W+ KPG+I+
Sbjct: 797 INPTLLRSGCGRLFMLLWIGPSKPGRIM 880
>TC79831 similar to GP|10177116|dbj|BAB10406. contains similarity to
ribonucleoprotein F~gene_id:K2A18.8 {Arabidopsis
thaliana}, partial (85%)
Length = 1184
Score = 24.3 bits (51), Expect = 7.3
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 19 QALEPAWITSRQIEAGRRAMSRNVRRGGKIWVRIFPDKPVTVRPTETR 66
+A A++ + +RAM ++ G +V +FP P R E+R
Sbjct: 831 KATGEAYVEFVSPDEAKRAMFKDKMTIGSRYVELFPSTPDEARRAESR 974
>BG583596 similar to GP|4325376|gb| T3H13.12 gene product {Arabidopsis
thaliana}, partial (46%)
Length = 778
Score = 24.3 bits (51), Expect = 7.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 94 PENIARKAISIAASKMPIRTQFIL 117
PEN ++S+AA K+P ++ IL
Sbjct: 240 PENSTANSVSLAAGKLPNQSSNIL 311
>TC83159
Length = 371
Score = 23.9 bits (50), Expect = 9.6
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = +1
Query: 83 PGKILYEMGGVPENIARKAISIAASKMPIRTQFILS 118
PGK+ Y GGV N+ + + + + ++L+
Sbjct: 190 PGKVYYVQGGVARNVXXMHVKARSKXIHDQCAWVLT 297
>TC81293 similar to GP|19911581|dbj|BAB86894. syringolide-induced protein
B13-1-9 {Glycine max}, partial (60%)
Length = 799
Score = 23.9 bits (50), Expect = 9.6
Identities = 13/40 (32%), Positives = 18/40 (44%)
Frame = -3
Query: 9 NTISFGKYALQALEPAWITSRQIEAGRRAMSRNVRRGGKI 48
N +SF L W TS++I R A + RR +I
Sbjct: 227 NLVSFASLTLNLKVRGWTTSQKIRIMRPARTMIARRSFQI 108
>TC85581 weakly similar to PIR|T14329|T14329 dermal glycoprotein precursor
extracellular - carrot (fragment), partial (72%)
Length = 1570
Score = 23.9 bits (50), Expect = 9.6
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Frame = -3
Query: 48 IWVRIFPDKPVTVRPTETRMGSGKGSP-------EYWVAVVKPGKILYEM 90
+WV +FP + V + G K +P E+W + G+ + EM
Sbjct: 419 LWVTLFPGATLQVLLLQPGFGDEKQTPQSSNLAREHWAERHRAGRYVEEM 270
>TC77791 similar to GP|10176862|dbj|BAB10068.
emb|CAB80929.1~gene_id:MRO11.1~similar to unknown
protein {Arabidopsis thaliana}, partial (31%)
Length = 1053
Score = 23.9 bits (50), Expect = 9.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 44 RGGKIWVRIFPDKPVTVRPTETRMGSGKGSP 74
RGG + + FP +T P E G+G G+P
Sbjct: 629 RGGGVVLYGFPYVTLTPPPYEFPYGAGAGAP 537
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,162,940
Number of Sequences: 36976
Number of extensions: 36219
Number of successful extensions: 147
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of query: 119
length of database: 9,014,727
effective HSP length: 95
effective length of query: 24
effective length of database: 5,502,007
effective search space: 132048168
effective search space used: 132048168
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
Medicago: description of AC142142.2